rna761, rna761 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna761
Unique Name	rna761
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1427
Alignment location	CM002456.1:362229..364400 +

Link to JBrowse

Properties


Property Name	Value
Product	homoserine kinase
Orig transcript id	gnl\|cribi\|Naga_100035g25.3370.mrna
Orig protein id	gnl\|cribi\|Naga_100035g25.3370
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:362229..364400 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100035g25	gene730	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna761	rna761-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29906.1	cds761	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:362229..364400+
coding sequence from alignment at CM002456.1:362229..364400+

mRNA sequence

>rna761 ID=rna761|Name=rna761|organism=Nannochloropsis gaditana|type=mRNA|length=1427bp
AGGCAACCATCCACATGGACAAGCCCAACCACATCCAAATGGCGCGGCAA
GAGAGCATTCTATGTACGCACTAGCCTGCCTCAGGACCATGCGTGCTGTC
GCCCTCGCCGAAGAGGCCGCCAGCCGCAGGAGGGCCCGCAGCCCGGGTGG
GGGGTACGCTCGACAGGGTTTTACGTTCATGACACCACAGGGACAAGACA
CCCAGAAAGCAGATCAGGCGCCAGCCGACGAGAGACATCCTATGAAGAAG
TCCTCGCAGTTCTCGTCATTTGGGAAGGTCAACGGTACTGAGGAGGAGAA
AAAAGACACTCCTTTGGACGATCCGCAAGCGCACCTCTCGCAGATCGTTG
AGGCCTCCGATGACTCGAAGCCCATCTTCAAAGATACAGCATGCTTAAAG
CCTGAGCGCATTGTCCTTCGTATACCACCGGTTTCCTCCGGCACAAGCCT
TGAGAGAAGATTTTGATACAAACAAAGTCTCTACTTTTGGTGGGGGCCTA
TGTGCATTTTGTTCCATGGTCCACATACGCGAGTAGAACGTGACATTTTA
CATATTTTCTTGAGAATTCAGTGTCTCGCTTGTTTCCTCCTTGGGTACCA
CCTTGCTGCTTCCCGTGTTCGTAAACATGCTCACTACGCTGGAAAGCGTC
TTGGTCTTCCGCATCGATTTCCGCACAGTCGCCTTATTGGCAAAACCTTT
GCCCTCGCTGTTCACCTGTTCTCTCGTAGTGCCTGAAAGTCCCCCAATGC
CACCTCCTCCTGTGTTCGTCGTGGCTCCCATCCGCTTCATTTTTGCCAGC
CGTTGTAAATTCTTTTGCGCTTTGACAATGAACTGCTCTTGCTTGATTGC
CTCCGTTTCTACCAGCTCCATGAATTTCTCGCTTTCTGCGCTCAAATCCT
CGTAGGCTTCTCGAGGAAGGGAGAGCACCTCGGAATAGACAGCGGCTCGG
ACGTTGAAGTCGTGATTACCGTCGGTTGTAAGAGCGACTTGCCCGAACAT
GTCCCCCCTTTGAAGGTTGCTGTTAAGTGAAAGGGGACCGGATAAGAAAT
ACTCAACGAATTTGCGACAGCGTGTGCACATCTATTTTATAGAACGCTTC
GAAAAGGTCCTTATAAGACGGACGAGGAGAGGCACAGAAGAAGAAACACG
GGATGAGGGGAGCTGCAGAATAAGTCACTCAATCACACAGTCCCTTCCAC
CTGCTTACCTGATGACTGTCACGTTATCCAATGTTATTTCCAGTTGCCCG
TTCTTGACGAAATAGAGAAATTCCCCTTTATCTCCTTCCTTGAAGACGTG
CTCTCCTGGCATATACATTGTCGATTGCAAAGTTTGCATCAGACCGATAA
TCGTGTTCAGTTCCAACTGCTTCAGAAGAGGGATATTTTTCACAAGTTCT
CGGTTAAGGAGAAGGGAGAGACGAAGC

protein sequence of rna761

>rna761-protein ID=rna761-protein|Name=rna761|organism=Nannochloropsis gaditana|type=polypeptide|length=422bp
MPKSMSDRAGDMLLGATFAASLGAIAFLLKLRKGNGKGTDESVKKAILEA
LDEARHSHPNIKLPHQHERKMQERMRLHAVEDDLHSEGPERRKVTVRVPA
TSANLGPGYDTIGMALDMWSEITVERADRFEIVAEGEGADDVPKDESNLV
VTGMKAAFAAAKKPMPLLKYHCINRIPYARGLGSSSAAIVAGLIAGLVLA
GHQLPCWGSEELLQLAACIEGHPDNVAPAIYGGIQLGIHTGERWTSERVN
TPPGIQLVLFIPDFIGKTSDARGVLDSKVERKDAVYNIGRVAWLVNALST
SNLDNLRFGVEDALHQPQRGKAVYKHLYPLIEAANAAGANGCFLSGAGPT
VMAITSGASGDIFAQRLSERVDWTVAEAMVRTAEAVGVKGQVYITSPAEH
GAQVVSAEPAFSSKVVRFKGDV

mRNA from alignment at CM002456.1:362229..364400+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna761 ID=rna761|Name=rna761|organism=Nannochloropsis gaditana|type=mRNA|length=2172bp|location=Sequence derived from alignment at CM002456.1:362229..364400+ (Nannochloropsis gaditana)
TGCGTACATAGAATGCTCTCTTGCCGCGCCATTTGGATGTGGTTGGGCTT
GTCCATGTGGATGGTTGCCTGCGAAACATGAAAGTCGCGGGGACGGGCAT
GGTTGTGTCATGAGCTATCCTCTTCTGCTTGGTAAGGAGGTCATCCCTGC
CTTTATTCATCTTCGCATTACTTCACAAGGGCAAGACCAATTACTCATTA
CTCACTGCATTCTCATTGAAACACACCCCGATTGTTGTTGGCGACAACAA
AGCAAAAGATGCCTAAGTCTATGAGTGACCGGGCGGGGGATATGCTTCTG
GGCGCGACATTCGCAGCGAGCTTGGGTGCCATAGCTTTCTTGCTTAAATT
GCGcaaaggaaatggaaaggtATGTCGCCGCGGTCGAGTGAAAGCGAAAG
AAGATGGTGTCGATGTTGCCTCGTCCGGGAAGTAGGCCTCGGTCGTCGTG
TCaagagggagtggaagggAGTGGTAGGGAGTCGAATAGTCGATGTATTG
TCGGAGGACAGACTTGCAGGTGCTGAGGGCGCGAGAGTCATTTGAAGCAA
TGGATTGGCTTGTTGTGAATAGCGCAATACATTATAAATCATGTGACTTT
CACATTACTTTCGAAGTAGCGCGTTTTATTCTCACCACGCAAGGCAATTT
TTACTCCGTATAAAGAGGAGACATAGATCACTTACCTGTCTTTACCTTTA
TTTCTTTCCGACAGGGCACCGACGAATCGGTGAAGAAAGCCATTCTTGAA
GCGCTAGATGAAGCGCGGCACTCACACCCCAACATCAAGCTTCCGCACCA
GCATGAACGGAAGATGCAGGAGCGTATGCGCCTCCATGCTGTTGAAGACG
ACTTGCACAGCGAGGGACCCGAACGCCGCAAGGTGACCGTGCGCGTCCCG
GCTACGTCCGCAAACCTTGGGCCAGGCTACGATACGATCGGGATGGCGCT
TGACATGTGGAGCGAGATCACGGTGGAGCGGGCGGACCGCTTTGAGATCG
tcgccgagggggagggggccgacgACGTGCCCAAGGACGAAAGCAACCTG
GTGGTGACGGGGATGAAGGCTGCCTTTGCTGCGGCCAAAAAACCTATGCC
TCTCCTAAAGTACCACTGCATCAATCGGATTCCGTACGCGAGAGGGCTGG
GATCCTCTTCCGCTGCCATTGTCGCAGGCTTGATCGCTGGGCTGGTTTTG
GCAGGGCATCAGCTTCCCTGCTGGGGCTCGGAGGAGTTGCTGCAGCTAGC
GGCCTGCATCGAAGGACACCCGGATAACGTCGCTCCAGCAATATATGGTG
GCATTCAGCTGGGCATACAcacgggggagaggtggacgagCGAGCGCGTG
AACACCCCCCCTGGGATCCAGCTTGTCCTCTTCATACCGGACTTTATCGG
CAAGACGAGCGATGCCCGGGGCGTGCTCGACTCAAAGGTGGAACGAAAGG
ACGCCGTGTATAATATTGGTCGCGTGGCTTGGTTGGTGAACGCGCTTTCG
ACCTCGAACCTAGACAACTTGCGCTTTGGGGTCGAGgacgccctccacca
gcctcaGCGCGGGAAGGCGGTTTATAAGCACCTGTACCCATTAATCGAGG
CTGCCAATGCAGCAGGTGCCAACGGCTGCTTTCTTTCAGGGGCGGGTCCC
ACAGTCATGGCCATCACAAGCGGGGCTTCAGGGGATATCTTTGCTCAGCG
GCTCAGTGAGCGCGTGGATTGGACGGTGGCCGAGGCCATGGTTCGGACAG
CAGAAGCGGTGGGGGTGAAAGGACAGGTGTATATCACTAGTCCAGCCGAG
CACGGCGCGCAGGTTGTGAGTGCCGAGCCGGCTTTTTCGAGTAAAGTGGT
GCGATTCAAAGGGGATGTTTGAGGAGTAGGCGAAAGGCGTGTCTCACgca
agcgaaggaggatgaagaacAGGCACAGACAGTGGGATGGCTGAATAGCC
CAACGGTTTAGAAAGATAGATATGCTTGTGAACGGTGCGTGGATTTGCGT
GTATGATCGAGGACGTACTTTTTGGACAGCATGTGCGCGACCAGCGGTGG
ATGGGGCACTTCCAACACCTAGAAAAATAATGGAGAGCATGGCACACGCG
CAAAATCGCCTCTATGAAGCTGAATTGGCGGACTAACTAATGAAATTTAC
GTATTTACGGACCCCCTTTAAT

Coding sequence (CDS) from alignment at CM002456.1:362229..364400+

>rna761 ID=rna761|Name=rna761|organism=Nannochloropsis gaditana|type=CDS|length=2538bp|location=Sequence derived from alignment at CM002456.1:362229..364400+ (Nannochloropsis gaditana)
ATGCCTAAGTCTATGAGTGACCGGGCGGGGGATATGCTTCTGGGCGCGAC
ATTCGCAGCGAGCTTGGGTGCCATAGCTTTCTTGCTTAAATTGCGcaaag
gaaatggaaagGGCACCGACGAATCGGTGAAGAAAGCCATTCTTGAAGCG
CTAGATGAAGCGCGGCACTCACACCCCAACATCAAGCTTCCGCACCAGCA
TGAACGGAAGATGCAGGAGCGTATGCGCCTCCATGCTGTTGAAGACGACT
TGCACAGCGAGGGACCCGAACGCCGCAAGGTGACCGTGCGCGTCCCGGCT
ACGTCCGCAAACCTTGGGCCAGGCTACGATACGATCGGGATGGCGCTTGA
CATGTGGAGCGAGATCACGGTGGAGCGGGCGGACCGCTTTGAGATCGtcg
ccgagggggagggggccgacgACGTGCCCAAGGACGAAAGCAACCTGGTG
GTGACGGGGATGAAGGCTGCCTTTGCTGCGGCCAAAAAACCTATGCCTCT
CCTAAAGTACCACTGCATCAATCGGATTCCGTACGCGAGAGGGCTGGGAT
CCTCTTCCGCTGCCATTGTCGCAGGCTTGATCGCTGGGCTGGTTTTGGCA
GGGCATCAGCTTCCCTGCTGGGGCTCGGAGGAGTTGCTGCAGCTAGCGGC
CTGCATCGAAGGACACCCGGATAACGTCGCTCCAGCAATATATGGTGGCA
TTCAGCTGGGCATACAcacgggggagaggtggacgagCGAGCGCGTGAAC
ACCCCCCCTGGGATCCAGCTTGTCCTCTTCATACCGGACTTTATCGGCAA
GACGAGCGATGCCCGGGGCGTGCTCGACTCAAAGGTGGAACGAAAGGACG
CCGTGTATAATATTGGTCGCGTGGCTTGGTTGGTGAACGCGCTTTCGACC
TCGAACCTAGACAACTTGCGCTTTGGGGTCGAGgacgccctccaccagcc
tcaGCGCGGGAAGGCGGTTTATAAGCACCTGTACCCATTAATCGAGGCTG
CCAATGCAGCAGGTGCCAACGGCTGCTTTCTTTCAGGGGCGGGTCCCACA
GTCATGGCCATCACAAGCGGGGCTTCAGGGGATATCTTTGCTCAGCGGCT
CAGTGAGCGCGTGGATTGGACGGTGGCCGAGGCCATGGTTCGGACAGCAG
AAGCGGTGGGGGTGAAAGGACAGGTGTATATCACTAGTCCAGCCGAGCAC
GGCGCGCAGGTTGTGAGTGCCGAGCCGGCTTTTTCGAGTAAAGTGGTGCG
ATTCAAAGGGGATGTTTGAATGCCTAAGTCTATGAGTGACCGGGCGGGGG
ATATGCTTCTGGGCGCGACATTCGCAGCGAGCTTGGGTGCCATAGCTTTC
TTGCTTAAATTGCGcaaaggaaatggaaagGGCACCGACGAATCGGTGAA
GAAAGCCATTCTTGAAGCGCTAGATGAAGCGCGGCACTCACACCCCAACA
TCAAGCTTCCGCACCAGCATGAACGGAAGATGCAGGAGCGTATGCGCCTC
CATGCTGTTGAAGACGACTTGCACAGCGAGGGACCCGAACGCCGCAAGGT
GACCGTGCGCGTCCCGGCTACGTCCGCAAACCTTGGGCCAGGCTACGATA
CGATCGGGATGGCGCTTGACATGTGGAGCGAGATCACGGTGGAGCGGGCG
GACCGCTTTGAGATCGtcgccgagggggagggggccgacgACGTGCCCAA
GGACGAAAGCAACCTGGTGGTGACGGGGATGAAGGCTGCCTTTGCTGCGG
CCAAAAAACCTATGCCTCTCCTAAAGTACCACTGCATCAATCGGATTCCG
TACGCGAGAGGGCTGGGATCCTCTTCCGCTGCCATTGTCGCAGGCTTGAT
CGCTGGGCTGGTTTTGGCAGGGCATCAGCTTCCCTGCTGGGGCTCGGAGG
AGTTGCTGCAGCTAGCGGCCTGCATCGAAGGACACCCGGATAACGTCGCT
CCAGCAATATATGGTGGCATTCAGCTGGGCATACAcacgggggagaggtg
gacgagCGAGCGCGTGAACACCCCCCCTGGGATCCAGCTTGTCCTCTTCA
TACCGGACTTTATCGGCAAGACGAGCGATGCCCGGGGCGTGCTCGACTCA
AAGGTGGAACGAAAGGACGCCGTGTATAATATTGGTCGCGTGGCTTGGTT
GGTGAACGCGCTTTCGACCTCGAACCTAGACAACTTGCGCTTTGGGGTCG
AGgacgccctccaccagcctcaGCGCGGGAAGGCGGTTTATAAGCACCTG
TACCCATTAATCGAGGCTGCCAATGCAGCAGGTGCCAACGGCTGCTTTCT
TTCAGGGGCGGGTCCCACAGTCATGGCCATCACAAGCGGGGCTTCAGGGG
ATATCTTTGCTCAGCGGCTCAGTGAGCGCGTGGATTGGACGGTGGCCGAG
GCCATGGTTCGGACAGCAGAAGCGGTGGGGGTGAAAGGACAGGTGTATAT
CACTAGTCCAGCCGAGCACGGCGCGCAGGTTGTGAGTGCCGAGCCGGCTT
TTTCGAGTAAAGTGGTGCGATTCAAAGGGGATGTTTGA

Synonyms

Publications