rna7605, rna7605 (mRNA) Nannochloropsis gaditana

Overview
Namerna7605
Unique Namerna7605
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1647
Alignment locationCM002472.1:360861..362038 +

Link to JBrowse

Properties
Property NameValue
Productdna-damage-inducible protein
Orig transcript idgnl|cribi|Naga_101070g3.732.mrna
Orig protein idgnl|cribi|Naga_101070g3.732
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:360861..362038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101070g3gene7363Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7605rna7605-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23087.1cds7585Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7605 ID=rna7605|Name=rna7605|organism=Nannochloropsis gaditana|type=mRNA|length=1647bp
AATCCGAGAACTTTTCCAATAGATAATCATGCTTAATTGTATTGCTAATC
ATTAGTAAGACCAGCGTGATCTTGTGTGACGGCCGTGACCAACGAGACGA
CTGAAGTCGATGAACGTGGAACGCACCTCGAGCATTTCCTCTGGCGAGTT
CAACACAATCGTCAGAGGCCATGGCCAGCTCCCCTAGGCAACATTTTACA
ACGATGGGCACGCATTACTTTGCTTTCTGTCTCATTCTGTCGTAGGTTCC
TGTCATGCGGCGAGCACGTGTCTTGGAATGTAGTTTGCAGAGACGGTCTG
GGAATGTGTCCCCCCTTTCTTTTTCCTGTTAAGAACTCAGATTCCGCGTT
GCTCATCGCTGCAAGGCCACGGCGGCCCCGAATTTCCGATTTGTATGTCT
ATGAAGGCCATCCAATGCACCGTAGTGTTTTCATAGAGTCGGTCCGTGGA
TTGCGGTGGGAAAGTTAAGCGCCCCTCGCCCTTCACTCCGTTAACCTCCC
ATGCCTGCCCTGCCTTCTCCTTCCCTCAGAGTTTCCTCATGCTCCCCGTC
CTCTTCCTCTTACCCTGCGTGGCCGCCTGCACTCAAGCTTTCCGTTCATC
TTTTGACCCGGTACCCGTTCCCGGACACTCGGGCTCCCTTCCTCCTCGCC
CAGTCTGTTTTGCCGGGGCCACGCCTAAGTGGGGCTTCCGCCTCCCCCCT
TCGCATGGCCGCAGGAGCAGCATTCGGAGAAGAGGGCTCGCATGGCCAGC
CTCTTGGCCTCCACCTTCGTGCGGGCAAGGAAGACAAGGAAAGGTCGAGT
GGAGGGTGTCAGGGTCGGCCTCCCCCTCCTCCCCGTCCTCCTCCCCTTCC
TCCTCCCCTTCCTCCTCCCCTCCCACCGCCCTCCCCCGCCCGCTGTCCCC
CTTCCGCCCCACCTTCCGTCGCCTCTTCCACCGTACCCCCTCCTCTCCCT
CCTTCCTTCCCCGCCTGAGGCCCGGCATGTCCGAGCACGATGCAGAGATC
GCGCGCATCTCCCTCCCCGCCCTCCTCACCCTCCTCGTGGACCCTTTCCT
CTCCCTCTGCGACACCGCCTACGTCAGTCGCCTGGGCACCCTTCCCCTCG
CCTGCTTGGGCCCGTGCACCTCCATTTTCCACCTCTCGTTCAACGGCTTT
CGCGCATTTTCCCAGTCCACCACCGCCTTGGTCTCGGGGGCCCTCGCCCA
ACAGGACCGGGACCGCGTGCGGGCCGTCGTCGTCCAGGCTTTGGTACTGG
CCTGCGTCCTCGGCACCCTGGTGTCCGCCGTCTTGAATGTCCAGGCGACC
CGAATCTTGGCCCTGATGGGCGCCCCCGCCGGTTCCCGCCTTTCTGCCAC
TGGTTTACCTTACCTTAAGGTCCGGGCCTTGGCGGCGCCCGCGGTCCTGA
TGCTGATGGTGGGGGAAGGAGCCTACCGGGGTTTCGCGGACACGTTGACG
CCATTGCCCATCACCTTCACGGTGGCCTTGGTCAACCTGGTGCTGGACCC
CTGGTTGATTTTCCGGGGAGGGTGGGGGGGAGGGCGGGGATGGGGCGTGG
CGGGCGCCGCGTGGGCGACCGTAGCGGCGCAATATGTGGGTCTGACGGCC
TATTTGGTGCTGCTCTTTGGCCGGCGGGAGACGAGCCCGTTGTGGAA
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protein sequence of rna7605

>rna7605-protein ID=rna7605-protein|Name=rna7605|organism=Nannochloropsis gaditana|type=polypeptide|length=235bp
MVGPGNSEVGGSILPRCSARRGSSHGGVSLSCSVSASSPWPPPSLPLTSL
PPARPPQVMAARLHSLHNLPALQSLARRLVQAGLVIGTGLGAILLALRHA
LPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCGRFASLAG
ASTLASTACAVVLGAMQGGGRGWGQGGVVSIWLAIKGLFVLRLGCVAWLL
YNPWTGVLRRKGGWEGEGEEGEGIVPISPRLLVIE
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mRNA from alignment at CM002472.1:360861..362038+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7605 ID=rna7605|Name=rna7605|organism=Nannochloropsis gaditana|type=mRNA|length=1178bp|location=Sequence derived from alignment at CM002472.1:360861..362038+ (Nannochloropsis gaditana)
ATGGTGGGCCCGGGAAATTCGGAGGTGGGCGGTTCGATCTTGCCTCGTTG
CTCGGCAAGACGTGGATCATCCCATGGCGGAGTCTCTCTCTCGTGTTCGG
TCtcggcttcttccccctggccgcccccttccctccctctcacctctctt
cctcccgcccgccctccacaGGTCATGGCGGCGCGCTTGCACAGCCTCca
caacctccccgccctccagtCCCTAGCCCGACGCCTGGTGCAGGCGGGTC
TGGTCATTGGCACGGGCTTGGGCGCtatcctcctcgccctccgtcacgcc
ctcccccccgtcttcACCACCGACCCGGGCGTCCTCGGGAAAATGCGGGC
CTTGATGGTGTTGATCGGCCTTCAACTTCCCTTGGTTGCAGTCACCTTAA
TCGGCGAAAGCTTTCTGGTCGGCTGCGGCCGGTTTGCCTCCTTGGCAGGA
GCTTCCACCTTGGCCTCTACCGCCTGCGCCGTGGTGCTGGGGGCgatgca
gggaggagggagggggtgggggcagggcggggtggTATCCATCTGGCTGG
CGATAAAAGGTCTCTTTGTCTTGCGCCTCGGGTGCGTGGCTTGGTTGTTG
TACAACCCCTGGACCGGGGTGTTGCGTCGGAagggcgggtgggaaggcga
aggggaagaaggggaggggatcgtCCCGATTTCGCCACGCTTGTTGGTGA
TTgagtgagaaggaagggaagaggggagggggggaggtgcaggcGTGGAC
GCTTGAGCGTTATCCCGTTACCGAGGAGGTGGGATGGACGTGTGGGGAGG
TGTTGAGTACGCTCGCGGTGTAGGTATTATCATCacaagagaggaggagg
cgggggagaagaaggaggaaggaaggaaggaagggaggaaggaagggagg
aacgaggaagacaagaggTGGCGAGACGCTTCGGCGAAGCTGAGGGACTG
CGGCGGGATTGATGCATGCAGGGGTGAGAGGTGAGAGGGTTGGAACATGC
GGACTCCCTCGATGTGTTTCTTTAGAGGCCTGGTGGCGTGTTCCATAATC
ATGTAATCGCAGGGCTCACTCGTGCCGACCCTCCGCTTGTGCGGGCTTTG
CATGGTCGGGGCTCTGAAATAGgcgtgagagggaaagaaggaagaggacg
ccAAAGACATTTTCAATCAAGAAGTTGA
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Coding sequence (CDS) from alignment at CM002472.1:360861..362038+

>rna7605 ID=rna7605|Name=rna7605|organism=Nannochloropsis gaditana|type=CDS|length=708bp|location=Sequence derived from alignment at CM002472.1:360861..362038+ (Nannochloropsis gaditana)
ATGGTGGGCCCGGGAAATTCGGAGGTGGGCGGTTCGATCTTGCCTCGTTG
CTCGGCAAGACGTGGATCATCCCATGGCGGAGTCTCTCTCTCGTGTTCGG
TCtcggcttcttccccctggccgcccccttccctccctctcacctctctt
cctcccgcccgccctccacaGGTCATGGCGGCGCGCTTGCACAGCCTCca
caacctccccgccctccagtCCCTAGCCCGACGCCTGGTGCAGGCGGGTC
TGGTCATTGGCACGGGCTTGGGCGCtatcctcctcgccctccgtcacgcc
ctcccccccgtcttcACCACCGACCCGGGCGTCCTCGGGAAAATGCGGGC
CTTGATGGTGTTGATCGGCCTTCAACTTCCCTTGGTTGCAGTCACCTTAA
TCGGCGAAAGCTTTCTGGTCGGCTGCGGCCGGTTTGCCTCCTTGGCAGGA
GCTTCCACCTTGGCCTCTACCGCCTGCGCCGTGGTGCTGGGGGCgatgca
gggaggagggagggggtgggggcagggcggggtggTATCCATCTGGCTGG
CGATAAAAGGTCTCTTTGTCTTGCGCCTCGGGTGCGTGGCTTGGTTGTTG
TACAACCCCTGGACCGGGGTGTTGCGTCGGAagggcgggtgggaaggcga
aggggaagaaggggaggggatcgtCCCGATTTCGCCACGCTTGTTGGTGA
TTgagtga
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Synonyms
Publications