EWM23087.1, cds7585 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23087.1 vs. NCBI_GenBank
Match: gi|585103942|gb|EWM23087.1| (dna-damage-inducible protein [Nannochloropsis gaditana]) HSP 1 Score: 448.358 bits (1152), Expect = 6.211e-159 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query: 1 MVGPGNSEVGGSILPRCSARRGSSHGGVSLSCSVSASSPWPPPSLPLTSLPPARPPQVMAARLHSLHNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCGRFASLAGASTLASTACAVVLGAMQGGGRGWGQGGVVSIWLAIKGLFVLRLGCVAWLLYNPWTGVLRRKGGWEGEGEEGEGIVPISPRLLVIE 235
MVGPGNSEVGGSILPRCSARRGSSHGGVSLSCSVSASSPWPPPSLPLTSLPPARPPQVMAARLHSLHNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCGRFASLAGASTLASTACAVVLGAMQGGGRGWGQGGVVSIWLAIKGLFVLRLGCVAWLLYNPWTGVLRRKGGWEGEGEEGEGIVPISPRLLVIE
Sbjct: 1 MVGPGNSEVGGSILPRCSARRGSSHGGVSLSCSVSASSPWPPPSLPLTSLPPARPPQVMAARLHSLHNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCGRFASLAGASTLASTACAVVLGAMQGGGRGWGQGGVVSIWLAIKGLFVLRLGCVAWLLYNPWTGVLRRKGGWEGEGEEGEGIVPISPRLLVIE 235
BLAST of EWM23087.1 vs. NCBI_GenBank
Match: gi|298710068|emb|CBJ31784.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 63.929 bits (154), Expect = 2.613e-8 Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 0
Query: 45 LPLTSLPPARPPQVMAARLHSLHNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCGRFASLAGASTLASTACA 160
L + P+ QV+ AR + L +S+ARR++ L L LL L +P FT+DP VL ++ L+ L+ +Q PLVA+TL+ E LVG G+F LA +T+ S+A A
Sbjct: 215 FALIAEAPSIAAQVLGARYIAQGKLENARSMARRVLTLTLACSGFLATSLLCLSGVIPRCFTSDPEVLKRLHQLLPLLAVQQPLVALTLVAEGLLVGAGQFRWLA-TTTVGSSAVA 329
BLAST of EWM23087.1 vs. NCBI_GenBank
Match: gi|1002615140|gb|KXU19537.1| (MATE family efflux transporter [Clavibacter michiganensis subsp. nebraskensis] >gi|1027964162|gb|OAH19666.1| MATE family efflux transporter [Clavibacter michiganensis subsp. nebraskensis]) HSP 1 Score: 63.5438 bits (153), Expect = 4.708e-8 Identity = 45/127 (35.43%), Postives = 76/127 (59.84%), Query Frame = 0
Query: 67 HNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCG--RFASLAGASTLASTACAVVLGA-MQGGGRGWGQGGVVSIWLAIKGLFV 190
++P +Q++ARRLVQ G+ +G LG +L AL L PVFT DPG+ + A+ +++ + LP+ + + L+G G R+ +LAG LA A A++L A + G GR G ++++W A +++
Sbjct: 305 DDVPRVQAVARRLVQWGVGLGAILGLVLAALSPLLGPVFTGDPGIHRMLTAVTLVLAVGLPVAGYVFVLDGVLIGAGDARYLALAGLVNLAIYAPALILVAWLTGTGRVAGTPALLALWAAFGLVYI 431
BLAST of EWM23087.1 vs. NCBI_GenBank
Match: gi|505304312|ref|WP_015491414.1| (MATE family efflux transporter [Clavibacter michiganensis] >gi|472823179|emb|CCE76746.1| putative multidrug exporter, MOP(MATE) family [Clavibacter michiganensis subsp. nebraskensis NCPPB 2581]) HSP 1 Score: 63.1586 bits (152), Expect = 4.961e-8 Identity = 45/127 (35.43%), Postives = 76/127 (59.84%), Query Frame = 0
Query: 67 HNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCG--RFASLAGASTLASTACAVVLGA-MQGGGRGWGQGGVVSIWLAIKGLFV 190
++P +Q++ARRLVQ G+ +G LG +L AL L PVFT DPG+ + A+ +++ + LP+ + + L+G G R+ +LAG LA A A++L A + G GR G ++++W A +++
Sbjct: 294 DDVPRVQAVARRLVQWGVGLGAILGLVLAALSPLLGPVFTGDPGIHRMLTAVTLVLAVGLPVAGYVFVLDGVLIGAGDARYLALAGLVNLAIYAPALILVAWLTGTGRVAGTPALLALWAAFGLVYI 420
BLAST of EWM23087.1 vs. NCBI_GenBank
Match: gi|1087593983|emb|SDG32948.1| (putative efflux protein, MATE family [Lechevalieria fradiae]) HSP 1 Score: 60.8474 bits (146), Expect = 3.527e-7 Identity = 57/160 (35.62%), Postives = 73/160 (45.62%), Query Frame = 0
Query: 40 WPPPSLPLTSLPPARPPQVMAARLHSLHNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKM-RALMVLIGLQLPLVAVTLIGESFLVGCGRFASLAGASTLASTACAVVLGAMQGGGRGWGQGGVVSIWLAIKGLFVLRLGCVAW 198
W SL L SL A V AA S ++LA ++ + GLV G GLG + AL LP FT+DPGVLG++ A + LQ P+ V + L+G G + A TLAS + GWG G IW + VLRL V W
Sbjct: 267 WTFLSLVLDSLAIAAQSLVGAALGASRRKQA--ETLAWQVTRYGLVFGCGLGVVFAALYSVLPRAFTSDPGVLGEIPHAWWFFVALQ-PIAGVVFALDGVLLGAGDVKFMRTA-TLASAVAGFLPMVWASLAFGWGLAG---IWTGLSAFMVLRLVAVLW 419
BLAST of EWM23087.1 vs. NCBI_GenBank
Match: gi|760444209|ref|XP_011399173.1| (MATE efflux family protein 2, chloroplastic [Auxenochlorella protothecoides] >gi|675353837|gb|KFM26277.1| MATE efflux family protein 2, chloroplastic [Auxenochlorella protothecoides]) HSP 1 Score: 60.077 bits (144), Expect = 6.391e-7 Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 0
Query: 98 RHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCGRFASLAGASTLASTACAVVLGAMQGGGRGWGQGGVVSIWLAIKGLFVLRLGCVAWLLYNP 203
R ALP VFT+DP V G + ++ L+ L +PL AVT + + L+G + L + T+ T+ V LG + GW G++ +W +KGL + RL AW L +P
Sbjct: 309 RQALPTVFTSDPAVQGLVTMVLPLVALGMPLDAVTAVCDGTLLGAQEISWL--SKTMVVTSAGVALGLIAAQKYGW---GILGVWAVLKGLTLGRLAGAAWRLASP 409 The following BLAST results are available for this feature:
BLAST of EWM23087.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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