EWM23087.1, cds7585 (CDS) Nannochloropsis gaditana

Overview
NameEWM23087.1
Unique Namecds7585
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:360861..361568 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23087.1
Productdna-damage-inducible protein
Orig transcript idgnl|cribi|Naga_101070g3.732.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:360861..361568 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0042221response to chemical
GO:0055085transmembrane transport
GO:0006855drug transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0015238drug transmembrane transporter activity
GO:0015297antiporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002528MATE
Homology
BLAST of EWM23087.1 vs. NCBI_GenBank
Match: gi|585103942|gb|EWM23087.1| (dna-damage-inducible protein [Nannochloropsis gaditana])

HSP 1 Score: 448.358 bits (1152), Expect = 6.211e-159
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:    1 MVGPGNSEVGGSILPRCSARRGSSHGGVSLSCSVSASSPWPPPSLPLTSLPPARPPQVMAARLHSLHNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCGRFASLAGASTLASTACAVVLGAMQGGGRGWGQGGVVSIWLAIKGLFVLRLGCVAWLLYNPWTGVLRRKGGWEGEGEEGEGIVPISPRLLVIE 235
            MVGPGNSEVGGSILPRCSARRGSSHGGVSLSCSVSASSPWPPPSLPLTSLPPARPPQVMAARLHSLHNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCGRFASLAGASTLASTACAVVLGAMQGGGRGWGQGGVVSIWLAIKGLFVLRLGCVAWLLYNPWTGVLRRKGGWEGEGEEGEGIVPISPRLLVIE
Sbjct:    1 MVGPGNSEVGGSILPRCSARRGSSHGGVSLSCSVSASSPWPPPSLPLTSLPPARPPQVMAARLHSLHNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCGRFASLAGASTLASTACAVVLGAMQGGGRGWGQGGVVSIWLAIKGLFVLRLGCVAWLLYNPWTGVLRRKGGWEGEGEEGEGIVPISPRLLVIE 235          
BLAST of EWM23087.1 vs. NCBI_GenBank
Match: gi|298710068|emb|CBJ31784.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 63.929 bits (154), Expect = 2.613e-8
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 0
Query:   45 LPLTSLPPARPPQVMAARLHSLHNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCGRFASLAGASTLASTACA 160
              L +  P+   QV+ AR  +   L   +S+ARR++   L     L   LL L   +P  FT+DP VL ++  L+ L+ +Q PLVA+TL+ E  LVG G+F  LA  +T+ S+A A
Sbjct:  215 FALIAEAPSIAAQVLGARYIAQGKLENARSMARRVLTLTLACSGFLATSLLCLSGVIPRCFTSDPEVLKRLHQLLPLLAVQQPLVALTLVAEGLLVGAGQFRWLA-TTTVGSSAVA 329          
BLAST of EWM23087.1 vs. NCBI_GenBank
Match: gi|1002615140|gb|KXU19537.1| (MATE family efflux transporter [Clavibacter michiganensis subsp. nebraskensis] >gi|1027964162|gb|OAH19666.1| MATE family efflux transporter [Clavibacter michiganensis subsp. nebraskensis])

HSP 1 Score: 63.5438 bits (153), Expect = 4.708e-8
Identity = 45/127 (35.43%), Postives = 76/127 (59.84%), Query Frame = 0
Query:   67 HNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCG--RFASLAGASTLASTACAVVLGA-MQGGGRGWGQGGVVSIWLAIKGLFV 190
             ++P +Q++ARRLVQ G+ +G  LG +L AL   L PVFT DPG+   + A+ +++ + LP+     + +  L+G G  R+ +LAG   LA  A A++L A + G GR  G   ++++W A   +++
Sbjct:  305 DDVPRVQAVARRLVQWGVGLGAILGLVLAALSPLLGPVFTGDPGIHRMLTAVTLVLAVGLPVAGYVFVLDGVLIGAGDARYLALAGLVNLAIYAPALILVAWLTGTGRVAGTPALLALWAAFGLVYI 431          
BLAST of EWM23087.1 vs. NCBI_GenBank
Match: gi|505304312|ref|WP_015491414.1| (MATE family efflux transporter [Clavibacter michiganensis] >gi|472823179|emb|CCE76746.1| putative multidrug exporter, MOP(MATE) family [Clavibacter michiganensis subsp. nebraskensis NCPPB 2581])

HSP 1 Score: 63.1586 bits (152), Expect = 4.961e-8
Identity = 45/127 (35.43%), Postives = 76/127 (59.84%), Query Frame = 0
Query:   67 HNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCG--RFASLAGASTLASTACAVVLGA-MQGGGRGWGQGGVVSIWLAIKGLFV 190
             ++P +Q++ARRLVQ G+ +G  LG +L AL   L PVFT DPG+   + A+ +++ + LP+     + +  L+G G  R+ +LAG   LA  A A++L A + G GR  G   ++++W A   +++
Sbjct:  294 DDVPRVQAVARRLVQWGVGLGAILGLVLAALSPLLGPVFTGDPGIHRMLTAVTLVLAVGLPVAGYVFVLDGVLIGAGDARYLALAGLVNLAIYAPALILVAWLTGTGRVAGTPALLALWAAFGLVYI 420          
BLAST of EWM23087.1 vs. NCBI_GenBank
Match: gi|1087593983|emb|SDG32948.1| (putative efflux protein, MATE family [Lechevalieria fradiae])

HSP 1 Score: 60.8474 bits (146), Expect = 3.527e-7
Identity = 57/160 (35.62%), Postives = 73/160 (45.62%), Query Frame = 0
Query:   40 WPPPSLPLTSLPPARPPQVMAARLHSLHNLPALQSLARRLVQAGLVIGTGLGAILLALRHALPPVFTTDPGVLGKM-RALMVLIGLQLPLVAVTLIGESFLVGCGRFASLAGASTLASTACAVVLGAMQGGGRGWGQGGVVSIWLAIKGLFVLRLGCVAW 198
            W   SL L SL  A    V AA   S       ++LA ++ + GLV G GLG +  AL   LP  FT+DPGVLG++  A    + LQ P+  V    +  L+G G    +  A TLAS     +         GWG  G   IW  +    VLRL  V W
Sbjct:  267 WTFLSLVLDSLAIAAQSLVGAALGASRRKQA--ETLAWQVTRYGLVFGCGLGVVFAALYSVLPRAFTSDPGVLGEIPHAWWFFVALQ-PIAGVVFALDGVLLGAGDVKFMRTA-TLASAVAGFLPMVWASLAFGWGLAG---IWTGLSAFMVLRLVAVLW 419          
BLAST of EWM23087.1 vs. NCBI_GenBank
Match: gi|760444209|ref|XP_011399173.1| (MATE efflux family protein 2, chloroplastic [Auxenochlorella protothecoides] >gi|675353837|gb|KFM26277.1| MATE efflux family protein 2, chloroplastic [Auxenochlorella protothecoides])

HSP 1 Score: 60.077 bits (144), Expect = 6.391e-7
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 0
Query:   98 RHALPPVFTTDPGVLGKMRALMVLIGLQLPLVAVTLIGESFLVGCGRFASLAGASTLASTACAVVLGAMQGGGRGWGQGGVVSIWLAIKGLFVLRLGCVAWLLYNP 203
            R ALP VFT+DP V G +  ++ L+ L +PL AVT + +  L+G    + L  + T+  T+  V LG +     GW   G++ +W  +KGL + RL   AW L +P
Sbjct:  309 RQALPTVFTSDPAVQGLVTMVLPLVALGMPLDAVTAVCDGTLLGAQEISWL--SKTMVVTSAGVALGLIAAQKYGW---GILGVWAVLKGLTLGRLAGAAWRLASP 409          
The following BLAST results are available for this feature:
BLAST of EWM23087.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585103942|gb|EWM23087.1|6.211e-159100.00dna-damage-inducible protein [Nannochloropsis gadi... [more]
gi|298710068|emb|CBJ31784.1|2.613e-837.93conserved unknown protein [Ectocarpus siliculosus][more]
gi|1002615140|gb|KXU19537.1|4.708e-835.43MATE family efflux transporter [Clavibacter michig... [more]
gi|505304312|ref|WP_015491414.1|4.961e-835.43MATE family efflux transporter [Clavibacter michig... [more]
gi|1087593983|emb|SDG32948.1|3.527e-735.63putative efflux protein, MATE family [Lechevalieri... [more]
gi|760444209|ref|XP_011399173.1|6.391e-736.79MATE efflux family protein 2, chloroplastic [Auxen... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7605rna7605Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications