rna7604, rna7604 (mRNA) Nannochloropsis gaditana

Overview
Namerna7604
Unique Namerna7604
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1652
Alignment locationCM002472.1:358797..360443 +

Link to JBrowse

Properties
Property NameValue
Productmate efflux family protein
Orig transcript idgnl|cribi|Naga_101178g1.10707.mrna
Orig protein idgnl|cribi|Naga_101178g1.10707
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:358797..360443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101178g1gene7362Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7604rna7604-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23089.1cds7584Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7604 ID=rna7604|Name=rna7604|organism=Nannochloropsis gaditana|type=mRNA|length=1652bp
GAGAAGTGTGGTTTTTTTGAAATCAAATGAAAATAGTGCTACCCTTTGAC
TTGGTTCCTCCCACCTGTACCAGATACGCCTGTTGGAGCCCCATCTTCCA
CTGCCCCCTCCAAACACTTCATACGAAACAGGTATAGACGGACGCAACCT
ACTGTTTATAACCCCTGGTTCCTCCTCTAATGGACCTAGGTGGTCATTCA
TCGCCCTCACAATCCTGTGAGCGTGATGCGGCGCCGGAGAGACTATCAAA
CGGGGAGGTTGCGCCCCCATCCCGTTTACCGCCAATGTCCTCCGAAAGCA
GCATCAATGACACAACGACCAGTACGGAGGCGACCAGTACCATACCTGTT
GATGCATGGCAGTGTCCACCGCCGTGTGACCTAGATTTTGATAATACCCC
GGGTCCTCTGGTCGTAGGCCAAGCTCTCCAGGCGTTCCATAGCGATGGCA
CAGGACTCCCCCCGCCCAGAAGCAACCCGGGCACAAACCAAAGCATCGTC
AAGGCCGTACGTTTTTCCCCCGACGGCACCTGCCTCCTCACGGCGTCCGA
AGACCACGTCCTCCGTGTCTTTGAGCTTCCACACGACCTCCTCCTCCCCC
GGCCCTCCCTCCCCCTCCCTCCCCCTCCCCCCCTCCCCTCCCTCCCAGAA
TGGGCGCCCTGCCTGGCCTGCCCCGAGGGGGAGGCCATCTACGACCAAGC
CTGGTACCCGAGGATGGATGCCCGATCCGATCCGCTCAGCGCCTGCTTCC
TGTCCAGCAGTCGGGACCATCCGATCCACCTGTGGGACGCGTACACGGGC
GGACTGCGGGCGTCGTACCGTGCATACAACCACATGGACGAGTTGACCTC
GGCGCATTCCCTGGCCTTCACCCCTGGCGGGGACAAGATCTTTGCCGGCT
TTGAACGGATCCTCCGGGTCTTCGACACGGCCCGACCGGGGAGGGACCAC
GAGGACCGTCCGACCCGCCCTCATAAGCGAAGCCCAGAGCGGGGCTTGAA
CGGGATCATTTCCACCATTGCCTTTAGCCCGTTGGACGCAGCGCCAGGGA
TGTTTGTGGCGGGTTCTTTCTCCGGTTCCATGGCCCTCTACGACTACCGT
ATGAGAGGGGACTCCCTCCTCCTGTGGCCCGACCCGCATCAAGGCCAGGG
TCTGACCACGCTTCGCCTCTCCTACGACGGGCGCCTGCTCTTCTCCGGGG
CCCGGAAAAATGGTCATGTCCATTGTTGGGACCTGCGGAAAGGCACCTTG
CTCTCCTCCTTTGCGCGCAACGCGTCGAGTAATCAAAGGCTGGGCATAGA
CTTGGATCCAGCGGGGCGGTTTCTGGCCACGGGGAATCGTGGAGAAGGAA
AAGCACTCGTGTACGACTTGAGCACCGGAAAGGAGGTTGCAGGCCTAGGC
CCCTTGAAGGACACGGCCAGCGACGTAAGTTTCCATCCGTATGCGGGTTT
GGTGGCAGTTGGCATGGGAGAACGGCACTGGGAGTTTGAGAGCGAAGATG
ATGAGGAAGAAGAAATACTTGGGGAGGGCGTAATGGCCGGTGGGGGGGGA
GAGGAGAAAGAAGGGGTCACAAGCACGTCATGGAGCAGTGGAGTGCGCCT
GTTTCGAGTACCCCTGGCAAAACAAAGCAGCGGGGGGGGCGAACTAATGT
AG
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protein sequence of rna7604

>rna7604-protein ID=rna7604-protein|Name=rna7604|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MLPVLFLLPCVAACTQAFRSSFDPVPVPGHSGSLPPRPVCFAGATPKWGF
RLPPSHGRRSSIRRRGLAWPASWPPPSCGQGRQGKVEWRVSGSASPSSPS
SSPSSSPSSSPPTALPRPLSPFRPTFRRLFHRTPSSPSFLPRLRPGMSEH
DAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLS
FNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLN
VQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFA
DTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYV
GLTAYLVLLFGRRETSPLW
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mRNA from alignment at CM002472.1:358797..360443+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7604 ID=rna7604|Name=rna7604|organism=Nannochloropsis gaditana|type=mRNA|length=1647bp|location=Sequence derived from alignment at CM002472.1:358797..360443+ (Nannochloropsis gaditana)
AATCCGAGAACTTTTCCAATAGATAATCATGCTTAATTGTATTGCTAATC
ATTAGTAAGACCAGCGTGATCTTGTGTGACGGCCGTGACCAACGAGACGA
CTGAAGTCGATGAACGTGGAACGCACCTCGAGCATTTCCTCTGGCGAGTT
CAACACAATCGTCAGAGGCCATGGCCAGCTCCCCTAGGCAACATTTTACA
ACGATGGGCACGCATTACTTTGCTTTCTGTCTCATTCTGTCGTAGGTTCC
TGTCATGCGGCGAGCACGTGTCTTGGAATGTAGTTTGCAGAGACGGTCTG
GGAATGTgtcccccctttctttttcctgttAAGAACTCAGATTCCGCGTT
GCTCATCGCTGCAAGGCCACGGCGGCCCCGAATTTCCGATTTGTATGTCT
ATGAAGGCCATCCAATGCACCGTAGTGTTTTCATAGAGTCGGTCCGTGGA
TTGCGGTGGGAAAGTTAAgcgcccctcgcccttcactCCGTTAACCTCCC
ATGCCtgccctgccttctccttccctcagaGTTTCCTCatgctccccgtc
ctcttcctcttacCCTGCGTGGCCGCCTGCACTCAAGCTTTCCGTTCATC
TTTTGACCCGGTACCCGTTCCCGGACACTCgggctcccttcctcctcgcc
cagtcTGTTTTGCCGGGGCCACGCCTAAGTggggcttccgcctcccccct
tcgcaTGGCCGCAGGAGCAGCATTCGGAGAAGAGGGCTCGCATGGCCAGC
CTcttggcctccaccttcgtgcgggcaaggaagacaaggaaaggTCGAGT
GGAGGGTGTCAGGgtcggcctccccctcctccccgtcctcctccccttcc
tcctccccttcctcctcccctcccaccgccctcccccgcccgctgtcccc
cttccgccccacCTTCCGTCGCCTCTTCCACCGtaccccctcctctccct
ccttccttccccgcctgaGGCCCGGCATGTCCGAGCACGATGCAGAGATC
GCgcgcatctccctccccgccctcctcaccctcctcgtggaccctttcct
ctccctctgcgaCACCGCCTACGTCAGTCGCCTGGgcacccttcccctcg
cctgCTTGGGCCCGTGCACCTCCATTTTCCACCTCTCGTTCAACGGCTTT
CGCGCATTTTCCCagtccaccaccgccttggTCTCGGGGGCCCTCGCCCA
ACAGGACCGGGACCGCGTGCGGGCCGTCGTCGTCCAGGCTTTGGTACTGG
CCTGCGTCCTCGGCACCCTGGTGTCCGCCGTCTTGAATGTCCAGGCGACC
CGAATCTTGGCCCTGATGGGCGCCCCCGCCGGTTCCCGCCTTTCTGCCAC
TGGTTTACCTTACCTTAAGGTCcgggccttggcggcgcCCGCGGTCCTGA
TGCTgatggtgggggaaggagcctACCGGGGTTTCGCGGACACGTTGACG
CCATTGCCCATCACCTTCACGGTGGCCTTGGTCAACCTGGTGCTGGACCC
CTGGTTGATTTtccggggagggtgggggggagggcggggatggggcgtgg
cgggcgcCGCGTGGGCGACCGTAGCGGCGCAATATGTGGGTCTGACGGCC
TATTTGGTGCTGCTCTTTGGCCGGCGGGAGACGAGCCCGTTGTGGAA
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Coding sequence (CDS) from alignment at CM002472.1:358797..360443+

>rna7604 ID=rna7604|Name=rna7604|organism=Nannochloropsis gaditana|type=CDS|length=1109bp|location=Sequence derived from alignment at CM002472.1:358797..360443+ (Nannochloropsis gaditana)
atgctccccgtcctcttcctcttacCCTGCGTGGCCGCCTGCACTCAAGC
TTTCCGTTCATCTTTTGACCCGGTACCCGTTCCCGGACACTCgggctccc
ttcctcctcgcccagtcTGTTTTGCCGGGGCCACGCCTAAGTggggcttc
cgcctccccccttcgcaTGGCCGCAGGAGCAGCATTCGGAGAAGAGGGCT
CGCATGGCCAGCCTcttggcctccaccttcgtgcgggcaaggaagacaag
gaaaggTCGAGTGGAGGGTGTCAGGgtcggcctccccctcctccccgtcc
tcctccccttcctcctccccttcctcctcccctcccaccgccctcccccg
cccgctgtcccccttccgccccacCTTCCGTCGCCTCTTCCACCGtaccc
cctcctctccctccttccttccccgcctgaGGCCCGGCATGTCCGAGCAC
GATGCAGAGATCGCgcgcatctccctccccgccctcctcaccctcctcgt
ggaccctttcctctccctctgcgaCACCGCCTACGTCAGTCGCCTGGgca
cccttcccctcgcctgCTTGGGCCCGTGCACCTCCATTTTCCACCTCTCG
TTCAACGGCTTTCGCGCATTTTCCCagtccaccaccgccttggTCTCGGG
GGCCCTCGCCCAACAGGACCGGGACCGCGTGCGGGCCGTCGTCGTCCAGG
CTTTGGTACTGGCCTGCGTCCTCGGCACCCTGGTGTCCGCCGTCTTGAAT
GTCCAGGCGACCCGAATCTTGGCCCTGATGGGCGCCCCCGCCGGTTCCCG
CCTTTCTGCCACTGGTTTACCTTACCTTAAGGTCcgggccttggcggcgc
CCGCGGTCCTGATGCTgatggtgggggaaggagcctACCGGGGTTTCGCG
GACACGTTGACGCCATTGCCCATCACCTTCACGGTGGCCTTGGTCAACCT
GGTGCTGGACCCCTGGTTGATTTtccggggagggtgggggggagggcggg
gatggggcgtggcgggcgcCGCGTGGGCGACCGTAGCGGCGCAATATGTG
GGTCTGACGGCCTATTTGGTGCTGCTCTTTGGCCGGCGGGAGACGAGCCC
GTTGTGGAA
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Synonyms
Publications