EWM23089.1, cds7584 (CDS) Nannochloropsis gaditana

Overview
NameEWM23089.1
Unique Namecds7584
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:359335..360443 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23089.1
Productmate efflux family protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101178g1.10707.mrna
GbkeyCDS
End range.
End range360443
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:359335..360443 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0042221response to chemical
GO:0055085transmembrane transport
GO:0006855drug transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0015238drug transmembrane transporter activity
GO:0015297antiporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002528MATE
Homology
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|585103945|gb|EWM23089.1| (mate efflux family protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0
Query:    1 MLPVLFLLPCVAACTQAFRSSFDPVPVPGHSGSLPPRPVCFAGATPKWGFRLPPSHGRRSSIRRRGLAWPASWPPPSCGQGRQGKVEWRVSGSASPSSPSSSPSSSPSSSPPTALPRPLSPFRPTFRRLFHRTPSSPSFLPRLRPGMSEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGRRETSPLW 369
            MLPVLFLLPCVAACTQAFRSSFDPVPVPGHSGSLPPRPVCFAGATPKWGFRLPPSHGRRSSIRRRGLAWPASWPPPSCGQGRQGKVEWRVSGSASPSSPSSSPSSSPSSSPPTALPRPLSPFRPTFRRLFHRTPSSPSFLPRLRPGMSEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGRRETSPLW
Sbjct:    1 MLPVLFLLPCVAACTQAFRSSFDPVPVPGHSGSLPPRPVCFAGATPKWGFRLPPSHGRRSSIRRRGLAWPASWPPPSCGQGRQGKVEWRVSGSASPSSPSSSPSSSPSSSPPTALPRPLSPFRPTFRRLFHRTPSSPSFLPRLRPGMSEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGRRETSPLW 369          
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|502944447|ref|WP_013179423.1| (MATE family efflux transporter [Truepera radiovictrix] >gi|297166353|gb|ADI16064.1| MATE efflux family protein [Truepera radiovictrix DSM 17093])

HSP 1 Score: 156.762 bits (395), Expect = 3.213e-40
Identity = 105/223 (47.09%), Postives = 141/223 (63.23%), Query Frame = 0
Query:  143 LRP-GMSEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGRRE 364
            LRP  ++ +D +I  ++LPAL TL  DP +SL DTA+V RLG++PLA LG  T++F L+F  F   +  TT +V+ +L + DR+     VVQAL LA + G L  A L + A  +L LMG  AG  L    L YL+VRALA PA+L++  G GA+RG+ DT TP  +T  + LVN+ LDP  IF      G GWG+AGAAWATV AQ+ G   ++ +LF RR 
Sbjct:    2 LRPLRVNPYDRDILALALPALGTLAADPLVSLVDTAFVGRLGSVPLAALGVNTALFSLAFVVFNFLAYGTTPMVARSLGRGDREAAGRAVVQALTLALLAGGLAVAFLQLFAAPLLRLMG--AGEELVGPALGYLRVRALAGPALLLITAGNGAFRGYQDTRTPFLLTLGLNLVNVALDPLFIF------GFGWGLAGAAWATVVAQWAGALGFVWVLFARRR 216          
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|873233441|emb|CEM03282.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 150.984 bits (380), Expect = 3.416e-37
Identity = 94/212 (44.34%), Postives = 122/212 (57.55%), Query Frame = 0
Query:  129 LFHRTPSSPSFLPRLRPGMSEHDAEIARI-------SLPALLTLLVDPFLSLCDTAYVSR-LGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSR--LSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWG 330
            L   T   P  + +   G +E ++ ++ +       S+PALL  LVDP LS  D  YV R LG   LA LGPC SIFH+SF  FRA  QSTT+LV+ AL  +D DR   +VVQ+  LA  +G +++A L +    IL  MG  A     L+     YLK RA AAP+V+   V EGA+RGF DT TPL  +   A+VNL+LDP +IF   WG
Sbjct:   86 LVESTTKVPVSIEQDHDGGAEDNSSVSHLQKTIRDLSVPALLGNLVDPALSTIDNIYVGRGLGATSLAALGPCISIFHVSFGIFRALMQSTTSLVARALGARDNDRAGELVVQSSFLAVGMGVIIAAALQLLCGPILGCMGVGAVGVDPLALDARAYLKARAWAAPSVVFTQVAEGAFRGFGDTKTPLFASLLAAVVNLILDPIMIFSCQWG 297          
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|219129296|ref|XP_002184828.1| (hypothetical protein PHATRDRAFT_55128 [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403613|gb|EEC43564.1| hypothetical protein PHATRDRAFT_55128 [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 145.591 bits (366), Expect = 5.821e-36
Identity = 86/166 (51.81%), Postives = 106/166 (63.86%), Query Frame = 0
Query:  165 LLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWG 330
            +L DP LSL DTAYV RLG++PLA LG CTSIFHL+FN FRA + +TT+LVS  L QQD  + R V   +L+L   +G  V+  L      ILA MG P+ S L      YL  R  AAP VL + V EGA+RG+ DT+ PL  + T A +NLVLDP L+F  GWG
Sbjct:    1 MLADPVLSLIDTAYVGRLGSVPLAALGACTSIFHLAFNAFRATTAATTSLVSSRL-QQDEQKAREVTQTSLLLGVTMGLAVAVTLWAAGRPILASMGVPSDSVLFPDACAYLYARCGAAPVVLWIGVAEGAFRGYGDTIVPLVASLTAAAINLVLDPILMFTLGWG 165          
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|499724281|ref|WP_011405015.1| (MATE family efflux transporter [Salinibacter ruber] >gi|83815192|ref|YP_446395.1| MATE efflux family protein [Salinibacter ruber DSM 13855] >gi|83756586|gb|ABC44699.1| MATE efflux family protein [Salinibacter ruber DSM 13855] >gi|294344660|emb|CBH25438.1| MATE efflux family protein [Salinibacter ruber M8])

HSP 1 Score: 127.487 bits (319), Expect = 1.905e-29
Identity = 94/218 (43.12%), Postives = 127/218 (58.26%), Query Frame = 0
Query:  148 SEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVG-LTAYLVLLFGRRE 364
            S +D +I  +++PAL  L   P +SL DTA+V +LG +PL  LG  TSIF ++F  F   +  TT  V  A+   DR+     VV+ALVLA  +G +  A L   A  IL +MGA     L A  L YL++RALA PAVL++    GA+RG+ DT TP+ +T    +VN  LDP LIF         WG+AGAA AT   Q+VG LT   +LL+ +R+
Sbjct:    5 SPYDRDILDLAVPALAGLAAGPLVSLVDTAFVGQLGRIPLGALGVNTSIFSMTFVVFNFLAYGTTPRVGRAVGNDDREEAGRAVVRALVLAMAVGIVALAALQALARPILIVMGAS--EELMAPALSYLRIRALAGPAVLLITASHGAFRGYQDTRTPMVVTLGFNVVNGGLDPLLIFV------FDWGLAGAAAATAVGQWVGALTFLYLLLYAQRD 214          
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|298715216|emb|CBJ27888.1| (MATE efflux family protein [Ectocarpus siliculosus])

HSP 1 Score: 125.176 bits (313), Expect = 6.124e-28
Identity = 100/273 (36.63%), Postives = 138/273 (50.55%), Query Frame = 0
Query:   96 PSSPSSSPSSSPSSSPPTALPRPLSPFRPTFRRLFHRTPSSPSFLPRLRPGMSE---HDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSF-NGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGRRE 364
            P SP+     + +S PP A              L  +   +   +     G+S+    D EI  ++LP L  +L+DP LSL DT YV RLG L LA +GPC + F+  F     A   ST+ LVS   A  DR  +   +  A  LA  +G +++ +  V +  +L+LMGAP    + +  +PYL+ RA A PA L L+V  GA+RG  +    L     V +VNLVLDP L+F        G GV GAA AT AAQ+VG   Y   ++ RRE
Sbjct:   68 PPSPADDDDGTSASLPPAA-------------TLVRKRTRAKQKINSAVEGVSKPHVFDKEIFALALPTLGAVLIDPCLSLVDTGYVGRLGALSLAAIGPCAAAFNFVFVTASCALLVSTSVLVSEQRAMNDRAAIGRTLTLASGLAVSMGVIMAVLFYVNSAGLLSLMGAP--QEVMSLAVPYLRWRASAFPANLFLLVACGAFRGMGEPKAGLNNAIVVGVVNLVLDPVLMFSC------GLGVTGAAMATAAAQWVGALVYTKYMWDRRE 319          
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|1072230494|gb|OEU15227.1| (MATE efflux family protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 122.479 bits (306), Expect = 2.131e-27
Identity = 74/153 (48.37%), Postives = 95/153 (62.09%), Query Frame = 0
Query:  165 LLVDPFLSLCDTAYVSRLGTL-PLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVN 316
            +L DP LSL DTAYV RLG+   LA LG CTSIFHL+FN FRA + +TT+LV  A  + DR   R +V  +L L  VLG +V   L       L+ MG  AGS L +  + YL  R+ AAPAVL++ V EGA+RG+ DT  PL  +   +L+N
Sbjct:    1 MLADPLLSLMDTAYVGRLGSARELAALGACTSIFHLAFNAFRATTSATTSLVGNADTEADR---RQIVQISLTLGIVLGIVVMTFLQSFGPWCLSTMGISAGSPLFSPAIAYLGTRSWAAPAVLIITVAEGAFRGYGDTKIPLLASLAASLIN 150          
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|255086491|ref|XP_002509212.1| (Multidrug/Oligosaccharidyl-lipid/Polysaccharide flippase [Micromonas commoda] >gi|226524490|gb|ACO70470.1| Multidrug/Oligosaccharidyl-lipid/Polysaccharide flippase [Micromonas commoda])

HSP 1 Score: 115.931 bits (289), Expect = 3.566e-25
Identity = 100/239 (41.84%), Postives = 125/239 (52.30%), Query Frame = 0
Query:  132 RTPSS-PSFLPRLRPGMSEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGRRETSPLW 369
            R PSS P F      G  E D E+  +++PAL +LL DP +SL DTA V R  +  LA LGP T++F + F  F   S +TT +V+ A A  D   VR  +  + +LA   GT     LN  A  +L+ MG      L AT  PYL+VRA A PAVL     +G   G  D  TPL I    A+VN+  D  L   GG  GG G GV GAAWAT+AAQYV    +  +L  RR     W
Sbjct:    5 RNPSSKPIF------GKEELD-EVIALAIPALGSLLADPLMSLVDTAVVGRHSSTSLAALGPSTAVFQIVFQLFSFLSITTTGMVARACAGGDNGTVRRALANSTILAVAFGTATCLGLNAFAPAVLSAMGCS--PDLVATATPYLRVRAFAIPAVLFCTSAQGGCLGLQDARTPLLIFTLAAVVNVAGD--LYAVGGAWGGLGLGVKGAAWATLAAQYVSAAVFFRVLTSRRMLPLTW 232          
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|551208052|ref|WP_022836102.1| (MATE family efflux transporter [Salisaeta longa])

HSP 1 Score: 112.464 bits (280), Expect = 5.716e-24
Identity = 99/217 (45.62%), Postives = 129/217 (59.45%), Query Frame = 0
Query:  149 EHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVG-LTAYLVLLFGRRE 364
             HD  I  +++PAL  L   P ++L DTA+V +LG + L  LG   S+F ++F  F   +  TT  V  AL + DR     VV++ALVLA   G +  A L + A  +LALMGA  G RL    L YL++RA A PAVL++  G GA+RG+ DT TP+ IT    L+NLVLDP LIF      G GWG+AGAA AT  AQ+ G L  + +LL  RRE
Sbjct:    9 SHDRAIFDLAVPALAGLAAGPLVTLVDTAFVGQLGPVALGALGINASLFSMTFVIFNFLAYGTTPRVGRALGEGDRAEAGRVVLRALVLALGAGAVALAALQLLARPLLALMGA--GERLMEPALTYLRIRACAGPAVLLITAGNGAFRGYQDTRTPMAITVGFNLINLVLDPLLIF------GLGWGLAGAALATAGAQWTGALIFWWLLLNTRRE 217          
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|503223916|ref|WP_013458577.1| (MATE family efflux transporter [Oceanithermus profundus] >gi|313153556|gb|ADR37407.1| MATE efflux family protein [Oceanithermus profundus DSM 14977])

HSP 1 Score: 112.079 bits (279), Expect = 6.048e-24
Identity = 88/205 (42.93%), Postives = 113/205 (55.12%), Query Frame = 0
Query:  147 MSEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVG 351
            + + D EI R++LPAL  L V+P +S+ DTA+V RLG  PLA LG  T++  L F  F   S +TT  V+ +L    R+        AL LA VLG   +AVL + A  ++ LMGA       A G  YL++RALA  A+L LM   G YRG  DT TP  +TF V   N+VLD   IF        G G+ GAA A+V AQ  G
Sbjct:    3 LGQLDREIVRLALPALGALAVEPLVSMTDTAFVGRLGAEPLAALGITTALLALFFVVFNFLSYATTPRVARSLGAAGREAAMEQAGHALWLALVLGLAATAVLELLAPWLVQLMGAEGAVEPLALG--YLRLRALAGLAILWLMAAHGIYRGLQDTRTPFWVTFWVNAANVVLDYLFIFP------LGMGLMGAALASVLAQSAG 199          
The following BLAST results are available for this feature:
BLAST of EWM23089.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103945|gb|EWM23089.1|0.000e+0100.00mate efflux family protein, partial [Nannochlorops... [more]
gi|502944447|ref|WP_013179423.1|3.213e-4047.09MATE family efflux transporter [Truepera radiovict... [more]
gi|873233441|emb|CEM03282.1|3.416e-3744.34unnamed protein product [Vitrella brassicaformis C... [more]
gi|219129296|ref|XP_002184828.1|5.821e-3651.81hypothetical protein PHATRDRAFT_55128 [Phaeodactyl... [more]
gi|499724281|ref|WP_011405015.1|1.905e-2943.12MATE family efflux transporter [Salinibacter ruber... [more]
gi|298715216|emb|CBJ27888.1|6.124e-2836.63MATE efflux family protein [Ectocarpus siliculosus... [more]
gi|1072230494|gb|OEU15227.1|2.131e-2748.37MATE efflux family protein [Fragilariopsis cylindr... [more]
gi|255086491|ref|XP_002509212.1|3.566e-2541.84Multidrug/Oligosaccharidyl-lipid/Polysaccharide fl... [more]
gi|551208052|ref|WP_022836102.1|5.716e-2445.62MATE family efflux transporter [Salisaeta longa][more]
gi|503223916|ref|WP_013458577.1|6.048e-2442.93MATE family efflux transporter [Oceanithermus prof... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7604rna7604Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications