EWM23089.1, cds7584 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|585103945|gb|EWM23089.1| (mate efflux family protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0 Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0
Query: 1 MLPVLFLLPCVAACTQAFRSSFDPVPVPGHSGSLPPRPVCFAGATPKWGFRLPPSHGRRSSIRRRGLAWPASWPPPSCGQGRQGKVEWRVSGSASPSSPSSSPSSSPSSSPPTALPRPLSPFRPTFRRLFHRTPSSPSFLPRLRPGMSEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGRRETSPLW 369
MLPVLFLLPCVAACTQAFRSSFDPVPVPGHSGSLPPRPVCFAGATPKWGFRLPPSHGRRSSIRRRGLAWPASWPPPSCGQGRQGKVEWRVSGSASPSSPSSSPSSSPSSSPPTALPRPLSPFRPTFRRLFHRTPSSPSFLPRLRPGMSEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGRRETSPLW
Sbjct: 1 MLPVLFLLPCVAACTQAFRSSFDPVPVPGHSGSLPPRPVCFAGATPKWGFRLPPSHGRRSSIRRRGLAWPASWPPPSCGQGRQGKVEWRVSGSASPSSPSSSPSSSPSSSPPTALPRPLSPFRPTFRRLFHRTPSSPSFLPRLRPGMSEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGRRETSPLW 369
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|502944447|ref|WP_013179423.1| (MATE family efflux transporter [Truepera radiovictrix] >gi|297166353|gb|ADI16064.1| MATE efflux family protein [Truepera radiovictrix DSM 17093]) HSP 1 Score: 156.762 bits (395), Expect = 3.213e-40 Identity = 105/223 (47.09%), Postives = 141/223 (63.23%), Query Frame = 0
Query: 143 LRP-GMSEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGRRE 364
LRP ++ +D +I ++LPAL TL DP +SL DTA+V RLG++PLA LG T++F L+F F + TT +V+ +L + DR+ VVQAL LA + G L A L + A +L LMG AG L L YL+VRALA PA+L++ G GA+RG+ DT TP +T + LVN+ LDP IF G GWG+AGAAWATV AQ+ G ++ +LF RR
Sbjct: 2 LRPLRVNPYDRDILALALPALGTLAADPLVSLVDTAFVGRLGSVPLAALGVNTALFSLAFVVFNFLAYGTTPMVARSLGRGDREAAGRAVVQALTLALLAGGLAVAFLQLFAAPLLRLMG--AGEELVGPALGYLRVRALAGPALLLITAGNGAFRGYQDTRTPFLLTLGLNLVNVALDPLFIF------GFGWGLAGAAWATVVAQWAGALGFVWVLFARRR 216
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|873233441|emb|CEM03282.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 150.984 bits (380), Expect = 3.416e-37 Identity = 94/212 (44.34%), Postives = 122/212 (57.55%), Query Frame = 0
Query: 129 LFHRTPSSPSFLPRLRPGMSEHDAEIARI-------SLPALLTLLVDPFLSLCDTAYVSR-LGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSR--LSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWG 330
L T P + + G +E ++ ++ + S+PALL LVDP LS D YV R LG LA LGPC SIFH+SF FRA QSTT+LV+ AL +D DR +VVQ+ LA +G +++A L + IL MG A L+ YLK RA AAP+V+ V EGA+RGF DT TPL + A+VNL+LDP +IF WG
Sbjct: 86 LVESTTKVPVSIEQDHDGGAEDNSSVSHLQKTIRDLSVPALLGNLVDPALSTIDNIYVGRGLGATSLAALGPCISIFHVSFGIFRALMQSTTSLVARALGARDNDRAGELVVQSSFLAVGMGVIIAAALQLLCGPILGCMGVGAVGVDPLALDARAYLKARAWAAPSVVFTQVAEGAFRGFGDTKTPLFASLLAAVVNLILDPIMIFSCQWG 297
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|219129296|ref|XP_002184828.1| (hypothetical protein PHATRDRAFT_55128 [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403613|gb|EEC43564.1| hypothetical protein PHATRDRAFT_55128 [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 145.591 bits (366), Expect = 5.821e-36 Identity = 86/166 (51.81%), Postives = 106/166 (63.86%), Query Frame = 0
Query: 165 LLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWG 330
+L DP LSL DTAYV RLG++PLA LG CTSIFHL+FN FRA + +TT+LVS L QQD + R V +L+L +G V+ L ILA MG P+ S L YL R AAP VL + V EGA+RG+ DT+ PL + T A +NLVLDP L+F GWG
Sbjct: 1 MLADPVLSLIDTAYVGRLGSVPLAALGACTSIFHLAFNAFRATTAATTSLVSSRL-QQDEQKAREVTQTSLLLGVTMGLAVAVTLWAAGRPILASMGVPSDSVLFPDACAYLYARCGAAPVVLWIGVAEGAFRGYGDTIVPLVASLTAAAINLVLDPILMFTLGWG 165
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|499724281|ref|WP_011405015.1| (MATE family efflux transporter [Salinibacter ruber] >gi|83815192|ref|YP_446395.1| MATE efflux family protein [Salinibacter ruber DSM 13855] >gi|83756586|gb|ABC44699.1| MATE efflux family protein [Salinibacter ruber DSM 13855] >gi|294344660|emb|CBH25438.1| MATE efflux family protein [Salinibacter ruber M8]) HSP 1 Score: 127.487 bits (319), Expect = 1.905e-29 Identity = 94/218 (43.12%), Postives = 127/218 (58.26%), Query Frame = 0
Query: 148 SEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVG-LTAYLVLLFGRRE 364
S +D +I +++PAL L P +SL DTA+V +LG +PL LG TSIF ++F F + TT V A+ DR+ VV+ALVLA +G + A L A IL +MGA L A L YL++RALA PAVL++ GA+RG+ DT TP+ +T +VN LDP LIF WG+AGAA AT Q+VG LT +LL+ +R+
Sbjct: 5 SPYDRDILDLAVPALAGLAAGPLVSLVDTAFVGQLGRIPLGALGVNTSIFSMTFVVFNFLAYGTTPRVGRAVGNDDREEAGRAVVRALVLAMAVGIVALAALQALARPILIVMGAS--EELMAPALSYLRIRALAGPAVLLITASHGAFRGYQDTRTPMVVTLGFNVVNGGLDPLLIFV------FDWGLAGAAAATAVGQWVGALTFLYLLLYAQRD 214
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|298715216|emb|CBJ27888.1| (MATE efflux family protein [Ectocarpus siliculosus]) HSP 1 Score: 125.176 bits (313), Expect = 6.124e-28 Identity = 100/273 (36.63%), Postives = 138/273 (50.55%), Query Frame = 0
Query: 96 PSSPSSSPSSSPSSSPPTALPRPLSPFRPTFRRLFHRTPSSPSFLPRLRPGMSE---HDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSF-NGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGRRE 364
P SP+ + +S PP A L + + + G+S+ D EI ++LP L +L+DP LSL DT YV RLG L LA +GPC + F+ F A ST+ LVS A DR + + A LA +G +++ + V + +L+LMGAP + + +PYL+ RA A PA L L+V GA+RG + L V +VNLVLDP L+F G GV GAA AT AAQ+VG Y ++ RRE
Sbjct: 68 PPSPADDDDGTSASLPPAA-------------TLVRKRTRAKQKINSAVEGVSKPHVFDKEIFALALPTLGAVLIDPCLSLVDTGYVGRLGALSLAAIGPCAAAFNFVFVTASCALLVSTSVLVSEQRAMNDRAAIGRTLTLASGLAVSMGVIMAVLFYVNSAGLLSLMGAP--QEVMSLAVPYLRWRASAFPANLFLLVACGAFRGMGEPKAGLNNAIVVGVVNLVLDPVLMFSC------GLGVTGAAMATAAAQWVGALVYTKYMWDRRE 319
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|1072230494|gb|OEU15227.1| (MATE efflux family protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 122.479 bits (306), Expect = 2.131e-27 Identity = 74/153 (48.37%), Postives = 95/153 (62.09%), Query Frame = 0
Query: 165 LLVDPFLSLCDTAYVSRLGTL-PLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVN 316
+L DP LSL DTAYV RLG+ LA LG CTSIFHL+FN FRA + +TT+LV A + DR R +V +L L VLG +V L L+ MG AGS L + + YL R+ AAPAVL++ V EGA+RG+ DT PL + +L+N
Sbjct: 1 MLADPLLSLMDTAYVGRLGSARELAALGACTSIFHLAFNAFRATTSATTSLVGNADTEADR---RQIVQISLTLGIVLGIVVMTFLQSFGPWCLSTMGISAGSPLFSPAIAYLGTRSWAAPAVLIITVAEGAFRGYGDTKIPLLASLAASLIN 150
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|255086491|ref|XP_002509212.1| (Multidrug/Oligosaccharidyl-lipid/Polysaccharide flippase [Micromonas commoda] >gi|226524490|gb|ACO70470.1| Multidrug/Oligosaccharidyl-lipid/Polysaccharide flippase [Micromonas commoda]) HSP 1 Score: 115.931 bits (289), Expect = 3.566e-25 Identity = 100/239 (41.84%), Postives = 125/239 (52.30%), Query Frame = 0
Query: 132 RTPSS-PSFLPRLRPGMSEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGRRETSPLW 369
R PSS P F G E D E+ +++PAL +LL DP +SL DTA V R + LA LGP T++F + F F S +TT +V+ A A D VR + + +LA GT LN A +L+ MG L AT PYL+VRA A PAVL +G G D TPL I A+VN+ D L GG GG G GV GAAWAT+AAQYV + +L RR W
Sbjct: 5 RNPSSKPIF------GKEELD-EVIALAIPALGSLLADPLMSLVDTAVVGRHSSTSLAALGPSTAVFQIVFQLFSFLSITTTGMVARACAGGDNGTVRRALANSTILAVAFGTATCLGLNAFAPAVLSAMGCS--PDLVATATPYLRVRAFAIPAVLFCTSAQGGCLGLQDARTPLLIFTLAAVVNVAGD--LYAVGGAWGGLGLGVKGAAWATLAAQYVSAAVFFRVLTSRRMLPLTW 232
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|551208052|ref|WP_022836102.1| (MATE family efflux transporter [Salisaeta longa]) HSP 1 Score: 112.464 bits (280), Expect = 5.716e-24 Identity = 99/217 (45.62%), Postives = 129/217 (59.45%), Query Frame = 0
Query: 149 EHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVG-LTAYLVLLFGRRE 364
HD I +++PAL L P ++L DTA+V +LG + L LG S+F ++F F + TT V AL + DR VV++ALVLA G + A L + A +LALMGA G RL L YL++RA A PAVL++ G GA+RG+ DT TP+ IT L+NLVLDP LIF G GWG+AGAA AT AQ+ G L + +LL RRE
Sbjct: 9 SHDRAIFDLAVPALAGLAAGPLVTLVDTAFVGQLGPVALGALGINASLFSMTFVIFNFLAYGTTPRVGRALGEGDRAEAGRVVLRALVLALGAGAVALAALQLLARPLLALMGA--GERLMEPALTYLRIRACAGPAVLLITAGNGAFRGYQDTRTPMAITVGFNLINLVLDPLLIF------GLGWGLAGAALATAGAQWTGALIFWWLLLNTRRE 217
BLAST of EWM23089.1 vs. NCBI_GenBank
Match: gi|503223916|ref|WP_013458577.1| (MATE family efflux transporter [Oceanithermus profundus] >gi|313153556|gb|ADR37407.1| MATE efflux family protein [Oceanithermus profundus DSM 14977]) HSP 1 Score: 112.079 bits (279), Expect = 6.048e-24 Identity = 88/205 (42.93%), Postives = 113/205 (55.12%), Query Frame = 0
Query: 147 MSEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVG 351
+ + D EI R++LPAL L V+P +S+ DTA+V RLG PLA LG T++ L F F S +TT V+ +L R+ AL LA VLG +AVL + A ++ LMGA A G YL++RALA A+L LM G YRG DT TP +TF V N+VLD IF G G+ GAA A+V AQ G
Sbjct: 3 LGQLDREIVRLALPALGALAVEPLVSMTDTAFVGRLGAEPLAALGITTALLALFFVVFNFLSYATTPRVARSLGAAGREAAMEQAGHALWLALVLGLAATAVLELLAPWLVQLMGAEGAVEPLALG--YLRLRALAGLAILWLMAAHGIYRGLQDTRTPFWVTFWVNAANVVLDYLFIFP------LGMGLMGAALASVLAQSAG 199 The following BLAST results are available for this feature:
BLAST of EWM23089.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|