rna76, rna76 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna76
Unique Name	rna76
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1306
Alignment location	CM002455.1:217078..218350 +

Link to JBrowse

Properties


Property Name	Value
Product	BEACH domain protein
Orig transcript id	gnl\|cribi\|Naga_101743g1.2981.mrna
Orig protein id	gnl\|cribi\|Naga_101743g1.2981
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:217078..218350 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101743g1	gene74	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna76	rna76-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30597.1	cds76	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:217078..218350+
coding sequence from alignment at CM002455.1:217078..218350+

mRNA sequence

>rna76 ID=rna76|Name=rna76|organism=Nannochloropsis gaditana|type=mRNA|length=1306bp
TCCTCTTCTTCTTCTCCCACTTCTCCGTCTTCCTCGGTTTTTCCTGCTCC
CTCCCCCCCGACCTCCTCCCTTCCCTTCCTCCCCATAACCCTCTCCTCCT
CGTCGCTGAAGTTTCTCGCACAGGAAGGGCCTTCCCTCCTCATCGGTGCC
GCCGGGCAAAACCACAGCGGGATCCTCCTCTTCCTCTTCCTCCGCCTCTC
CCTTCTCCACCTGAACACCACCCACCCATTGCACCCGTCGGCCCTCCCGA
ACCTCCAGCGTTTTCACCTCCTCGTCCGTGCCCTCATGCTCTTCCTAACC
CATCATTCGTCGTCGAATGGCCGGGACCCGCGCGTTCCGGCCCATCTCCT
TGGCGAGGTGTCGCCCCTGAGGTGGGGGGAGTCCGACACCGTGACCCCGC
AGAGGATCCATCTTCCCTCCCCATCGCACCGTCAGGAGGCAGAGAATTGG
TGGGTCGTGTGCATTCTCCACGTCCAAAACGCCTTGCAACGCTTGCGCAA
CCTCCTCCGCGCCACTGTCGCTGCTCTTCCACCTTCACGCGCCCACTCCG
TGTCCGCCTCCACCTCTCGCGGGAGGGGCCGTAAGCAGCCGGGAGGGATT
GACCGGGAGGAAAAAGAGAAGGAGGAGGTTCAGGCGACCGAGCCCACGGG
CTGTCTTTTCTGCAATGGGAACCCGGGGAGGGAGGGAGGGAGGAGGACGA
TTGTAGAAGCGGTGGAAGAGGCAAAGGTCCTGCGTGCGGTCTTGACCACC
TTAACTGTGGGGCGAGAAGCGTGGGTGGAGGGGCTATATGTGGACCGGGA
GGGGTACGACGCAATGACCGCCTTGCTGGAGGTAGGAAGCCAGGCGATGG
GGCGGGAAGGCCGCGAGGAGGTGGCCAACCTGCCTTTCTTCGGAGGGTGT
TTCTCGTGCCGCACCGACCCTTTCCTCGGCGTCCTCCTCCACTCGTCGTC
CTCCCCGGGGCCTCCATCTCCATCGCTTCCTCCCTCCCCCTCGCACTGGC
TCCAGGACTCCAACCTCCTCACCCGTTACTCCCCCGCCCAAGGCGCCGTC
CGGTCCCGTCAGCCTAACGGCCAGCCGTTACCGGCGATGCTTCGAGTACT
ACTTGACGTTCGCCTGGGAGCAACAGCTGACGGAGGGGAGGTTCTGGGTA
TCCCACATGGGTGACCCGGAGCCGGTGATGATTTTGGAAGGACGGGCGGT
CCGGAAGGGGTTGGAGGAGGAGGAGGAGGGTAAAGAGTTAAGGAAAAAGG
AAGGAAGGCGGGAGCGGGAAGCGATCGGGCGGTGGGACGCGGTGATGAAG
GCCATG

protein sequence of rna76

>rna76-protein ID=rna76-protein|Name=rna76|organism=Nannochloropsis gaditana|type=polypeptide|length=398bp
MHLNVMAGRSFNDLNQYPVFPWVLADYTSPSLDLSLPSTFRDLSKPVGAL
DEGRARTFWHRYQAMKLEEAEEAAEEDGTGALRIPPFMYGSHYSSAALVL
HFLVRQEPFASHAVALQSGSFDCPDRLFFSLRAAWESALRSTTDVKELIP
ELFTTPECLQNTNRLPLGRLQDGQGRRVGDVELPPWARNAHDFVRQHRQA
LESEYVSSHLHEWIDLIFGWKQRGPPAEAARNVFYYLTYEGAVDVDRIDD
PVLKEATEAQIRHYGQTPSQLFSQPHPPRLPLHDTVQPLGASLASLTHLR
AYTPPQHLLRNLSLPAFSHCPSTFASPSGSTALPPSLPSSLPPSLPSPPV
LTVLAAPNKIHVVFNDFRVASYRWSAMPDSHDFPFTVRFERLRTLPCL

mRNA from alignment at CM002455.1:217078..218350+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna76 ID=rna76|Name=rna76|organism=Nannochloropsis gaditana|type=mRNA|length=1273bp|location=Sequence derived from alignment at CM002455.1:217078..218350+ (Nannochloropsis gaditana)
ATGCACCTGAACGTGATGGCGGGCCGTTCCTTCAACGATTTGAATCAGTA
CCCCGTCTTCCCTTGGGTACTGGCCGACTacacgtccccctccctcgacc
tctccctccccagcacCTTCCGGGACCTGAGCAAGCCCGTGGGGGCCTTG
GACGAGGGACGCGCCCGAACCTTTTGGCACCGGTACCAGGCGATGaaatt
ggaggaggcggaggaggcggcggaggaggacgggacggggGCCCTccgca
tccctcccttcatgtACGGGTCCCACTACTCCTCTGCggctctcgtcctc
catttcttggTCCGTCAGGAACCTTTCGCCAGCCACGCCGTCGCGTTGCA
ATCGGGAAGCTTCGACTGCCCCGACCGGCTCTTCTTCAGCCTCCGCGCGG
CCTGGGAAAGCGCCCTCCGTTCCACCACGGACGTGAAGGAGCTGATCCCC
GAGCTGTTCACCACGCCCGAATGCCTCCAAAACACGAATCGGCTCCCCCT
GGGGCGGTTGCAGGACGGACAGGGACGCCGGgtgggggacgtggagctcC
CTCCTTGGGCCCGAAACGCCCACGACTTTGTCCGTCAGCACCGGCAGGCC
TTGGAAAGCGAGTACGTGAGTTCCCATTTGCACGAATGGATCGACCTGAT
CTTTGGCTGGAAGCAGCGCGGCCCCCCCGCGGAAGCTGCCCGGAACGTGT
TTTACTACCTCACCTACGAAGGAGCGGTGGATGTGGACCGGATCGACGAT
CCCGTCCTcaaggaagcgacggaggcGCAGATCCGTCACTACGGACAAAC
GCCCTCCCAGCTTTTCAGCCAGCCCCaccccccacgcctcccgCTACACG
ATACGGTCCAACCCCTCggggcctccctggcctctcTGACGCACCTCCGT
GCCTATACCCCTCCTCAACACCTCCTTAGAAATCTGTCCCTACCTGCCTT
CTCCCATtgcccctccaccttcgcctCGCCCAGCGGGTccacggccctcc
ctccttccctcccttcctccctccctccttccctcccttcccctcccgtc
ctcacCGTCCTGGCAGCGCCCAACAAGATCCACGTGGTGTTCAACGACTT
CCGGGTAGCTTCTTACAGATGGTCGGCCATGCCTGATTCCCACGACTTTC
CCTTCACTGTCCGTTTCGAGAGACTGCGGACGCTGCCGTGTGCCGCTTCC
tactccaccgcctccttcccgccctccttcccgccctccctcgctacctc
ccctccccggcggAGGCCTGTGA

Coding sequence (CDS) from alignment at CM002455.1:217078..218350+

>rna76 ID=rna76|Name=rna76|organism=Nannochloropsis gaditana|type=CDS|length=2394bp|location=Sequence derived from alignment at CM002455.1:217078..218350+ (Nannochloropsis gaditana)
ATGCACCTGAACGTGATGGCGGGCCGTTCCTTCAACGATTTGAATCAGTA
CCCCGTCTTCCCTTGGGTACTGGCCGACTacacgtccccctccctcgacc
tctccctccccagcacCTTCCGGGACCTGAGCAAGCCCGTGGGGGCCTTG
GACGAGGGACGCGCCCGAACCTTTTGGCACCGGTACCAGGCGATGaaatt
ggaggaggcggaggaggcggcggaggaggacgggacggggGCCCTccgca
tccctcccttcatgtACGGGTCCCACTACTCCTCTGCggctctcgtcctc
catttcttggTCCGTCAGGAACCTTTCGCCAGCCACGCCGTCGCGTTGCA
ATCGGGAAGCTTCGACTGCCCCGACCGGCTCTTCTTCAGCCTCCGCGCGG
CCTGGGAAAGCGCCCTCCGTTCCACCACGGACGTGAAGGAGCTGATCCCC
GAGCTGTTCACCACGCCCGAATGCCTCCAAAACACGAATCGGCTCCCCCT
GGGGCGGTTGCAGGACGGACAGGGACGCCGGgtgggggacgtggagctcC
CTCCTTGGGCCCGAAACGCCCACGACTTTGTCCGTCAGCACCGGCAGGCC
TTGGAAAGCGAGTACGTGAGTTCCCATTTGCACGAATGGATCGACCTGAT
CTTTGGCTGGAAGCAGCGCGGCCCCCCCGCGGAAGCTGCCCGGAACGTGT
TTTACTACCTCACCTACGAAGGAGCGGTGGATGTGGACCGGATCGACGAT
CCCGTCCTcaaggaagcgacggaggcGCAGATCCGTCACTACGGACAAAC
GCCCTCCCAGCTTTTCAGCCAGCCCCaccccccacgcctcccgCTACACG
ATACGGTCCAACCCCTCggggcctccctggcctctcTGACGCACCTCCGT
GCCTATACCCCTCCTCAACACCTCCTTAGAAATCTGTCCCTACCTGCCTT
CTCCCATtgcccctccaccttcgcctCGCCCAGCGGGTccacggccctcc
ctccttccctcccttcctccctccctccttccctcccttcccctcccgtc
ctcacCGTCCTGGCAGCGCCCAACAAGATCCACGTGGTGTTCAACGACTT
CCGGGTAGCTTCTTACAGATGGTCGGCCATGCCTGATTCCCACGACTTTC
CCTTCACTGTCCGTTTCGAGAGACTGCGGACGCTGCCGTGCCTGTGAATG
CACCTGAACGTGATGGCGGGCCGTTCCTTCAACGATTTGAATCAGTACCC
CGTCTTCCCTTGGGTACTGGCCGACTacacgtccccctccctcgacctct
ccctccccagcacCTTCCGGGACCTGAGCAAGCCCGTGGGGGCCTTGGAC
GAGGGACGCGCCCGAACCTTTTGGCACCGGTACCAGGCGATGaaattgga
ggaggcggaggaggcggcggaggaggacgggacggggGCCCTccgcatcc
ctcccttcatgtACGGGTCCCACTACTCCTCTGCggctctcgtcctccat
ttcttggTCCGTCAGGAACCTTTCGCCAGCCACGCCGTCGCGTTGCAATC
GGGAAGCTTCGACTGCCCCGACCGGCTCTTCTTCAGCCTCCGCGCGGCCT
GGGAAAGCGCCCTCCGTTCCACCACGGACGTGAAGGAGCTGATCCCCGAG
CTGTTCACCACGCCCGAATGCCTCCAAAACACGAATCGGCTCCCCCTGGG
GCGGTTGCAGGACGGACAGGGACGCCGGgtgggggacgtggagctcCCTC
CTTGGGCCCGAAACGCCCACGACTTTGTCCGTCAGCACCGGCAGGCCTTG
GAAAGCGAGTACGTGAGTTCCCATTTGCACGAATGGATCGACCTGATCTT
TGGCTGGAAGCAGCGCGGCCCCCCCGCGGAAGCTGCCCGGAACGTGTTTT
ACTACCTCACCTACGAAGGAGCGGTGGATGTGGACCGGATCGACGATCCC
GTCCTcaaggaagcgacggaggcGCAGATCCGTCACTACGGACAAACGCC
CTCCCAGCTTTTCAGCCAGCCCCaccccccacgcctcccgCTACACGATA
CGGTCCAACCCCTCggggcctccctggcctctcTGACGCACCTCCGTGCC
TATACCCCTCCTCAACACCTCCTTAGAAATCTGTCCCTACCTGCCTTCTC
CCATtgcccctccaccttcgcctCGCCCAGCGGGTccacggccctccctc
cttccctcccttcctccctccctccttccctcccttcccctcccgtcctc
acCGTCCTGGCAGCGCCCAACAAGATCCACGTGGTGTTCAACGACTTCCG
GGTAGCTTCTTACAGATGGTCGGCCATGCCTGATTCCCACGACTTTCCCT
TCACTGTCCGTTTCGAGAGACTGCGGACGCTGCCGTGCCTGTGA

Synonyms

Publications