rna7585, rna7585 (mRNA) Nannochloropsis gaditana

Overview
Namerna7585
Unique Namerna7585
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length348
Alignment locationCM002472.1:301665..302285 -

Link to JBrowse

Properties
Property NameValue
Productsoluble pyridine nucleotide transhydrogenase
Orig transcript idgnl|cribi|Naga_101301g1.6961.mrna
Orig protein idgnl|cribi|Naga_101301g1.6961
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:301665..302285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101301g1gene7342Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23108.1cds7565Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7585rna7585-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7585 ID=rna7585|Name=rna7585|organism=Nannochloropsis gaditana|type=mRNA|length=348bp
ATGCTCTCCTGTCTCCCTCCCCCAACCCCCCTTACACGCGTTTACCCCTC
TGCCCTCTCCCCCTCCCCCTCCCCCCGGCCGCAGCTCCTGTGGGGAGGCA
TCGACCGCGTCCCACGCTCCTTCATCGTGGTGGGCGCCGGCGTGATTGGG
ATCGAGTACGCCTCCATGATTAACGTCCTGCCCGGCACAAACGTGACCAT
CATCGACCCCCGGCCAAGTTTGCTGGGCTTCGCGGACCGGGAGGTGGTGG
ACGCGTTGATGTACAGCATGCGCCACTACGGTGCCCGATTTGTTTTGGGG
GAGAAAAACGCATTGAGACCCTCCCTGACCGGGCTGTGGTGCACCTAG
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protein sequence of rna7585

>rna7585-protein ID=rna7585-protein|Name=rna7585|organism=Nannochloropsis gaditana|type=polypeptide|length=198bp
MRLALILIALAGRAKIQLLSMWYLRRFLLRQPRSHALCPTSPSSSHAPSS
SLPSSPLQCRALSSTGGAGFYNFPPSAHYDLIVIGSGPAAQKCAIDSVKR
GRRVAMIDKNSQMGGVCVHTGKKSPCPPWGIFDVGTEDLGRVLRRPVGVG
RAGRGQRGTTAPRMHSTTHSSSPRLRTQPCPRDQAPSRARRSGRPSCT
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mRNA from alignment at CM002472.1:301665..302285-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7585 ID=rna7585|Name=rna7585|organism=Nannochloropsis gaditana|type=mRNA|length=621bp|location=Sequence derived from alignment at CM002472.1:301665..302285- (Nannochloropsis gaditana)
CACGCCTAACTTTATCTCCTCTTCATGCGTCTTGCACTTATCCTCATAGC
GCTCGCTGGACGTGCTAAAATCCAGCTCTTAAGCATGTGGTATCTACGGC
GCTTTCTCCTCCGGCAGCCTCGCAGTCATGCCCTGTGCCCCACCTCCCCG
TCTTCCTCCCACGCACCTTCCTCTTCCCTGCCCTCTTCCCCCCTCCAATG
CCGTGCTCTAAGTAGCACTGGCGGGGCCGGCTTCTATAATTTCCCCCCCT
CGGCTCACTATGACCTGATCGTGATTGGGTCGGGCCCTGCTGCGCAAAAA
TGCGCGATCGACAGCGTGAAACGAGGACGCCGGGTGGCCATGATAGATAA
GAACAGCCAAATGGGCGGTGTGTGCGTGCACACAGGTAAGAAATCGCCGT
GTCCGCCTTGGGGTATCTTCGATGTCGGCACGGAGGACCTTGGTCGAGTC
CTGCGTCGTCCTGTTGGAGTGGGGAGGGCTGGGCGGGGGCAAAGAGGGAC
GACAGCGCCTCGTATGCACTCAACCACCCACTCCTCTTCACCTCGTTTAC
GCACACAACCATGCCCCCGGGACCAGGCACCATCCCGAGCAAGACGTTCA
GGGAGGCCGTCCTGCACTTGA
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Coding sequence (CDS) from alignment at CM002472.1:301665..302285-

>rna7585 ID=rna7585|Name=rna7585|organism=Nannochloropsis gaditana|type=CDS|length=597bp|location=Sequence derived from alignment at CM002472.1:301665..302285- (Nannochloropsis gaditana)
ATGCGTCTTGCACTTATCCTCATAGCGCTCGCTGGACGTGCTAAAATCCA
GCTCTTAAGCATGTGGTATCTACGGCGCTTTCTCCTCCGGCAGCCTCGCA
GTCATGCCCTGTGCCCCACCTCCCCGTCTTCCTCCCACGCACCTTCCTCT
TCCCTGCCCTCTTCCCCCCTCCAATGCCGTGCTCTAAGTAGCACTGGCGG
GGCCGGCTTCTATAATTTCCCCCCCTCGGCTCACTATGACCTGATCGTGA
TTGGGTCGGGCCCTGCTGCGCAAAAATGCGCGATCGACAGCGTGAAACGA
GGACGCCGGGTGGCCATGATAGATAAGAACAGCCAAATGGGCGGTGTGTG
CGTGCACACAGGTAAGAAATCGCCGTGTCCGCCTTGGGGTATCTTCGATG
TCGGCACGGAGGACCTTGGTCGAGTCCTGCGTCGTCCTGTTGGAGTGGGG
AGGGCTGGGCGGGGGCAAAGAGGGACGACAGCGCCTCGTATGCACTCAAC
CACCCACTCCTCTTCACCTCGTTTACGCACACAACCATGCCCCCGGGACC
AGGCACCATCCCGAGCAAGACGTTCAGGGAGGCCGTCCTGCACTTGA
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Synonyms
Publications