EWM23108.1, cds7565 (CDS) Nannochloropsis gaditana

Overview
NameEWM23108.1
Unique Namecds7565
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:301665..302261 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23108.1
Productsoluble pyridine nucleotide transhydrogenase
Orig transcript idgnl|cribi|Naga_101301g1.6961.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:301665..302261 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR023753Pyr_nucl-diS_OxRdtase_FAD/NAD
Homology
BLAST of EWM23108.1 vs. NCBI_GenBank
Match: gi|585103978|gb|EWM23108.1| (soluble pyridine nucleotide transhydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 396.356 bits (1017), Expect = 1.607e-139
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query:    1 MRLALILIALAGRAKIQLLSMWYLRRFLLRQPRSHALCPTSPSSSHAPSSSLPSSPLQCRALSSTGGAGFYNFPPSAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTGKKSPCPPWGIFDVGTEDLGRVLRRPVGVGRAGRGQRGTTAPRMHSTTHSSSPRLRTQPCPRDQAPSRARRSGRPSCT 198
            MRLALILIALAGRAKIQLLSMWYLRRFLLRQPRSHALCPTSPSSSHAPSSSLPSSPLQCRALSSTGGAGFYNFPPSAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTGKKSPCPPWGIFDVGTEDLGRVLRRPVGVGRAGRGQRGTTAPRMHSTTHSSSPRLRTQPCPRDQAPSRARRSGRPSCT
Sbjct:    1 MRLALILIALAGRAKIQLLSMWYLRRFLLRQPRSHALCPTSPSSSHAPSSSLPSSPLQCRALSSTGGAGFYNFPPSAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTGKKSPCPPWGIFDVGTEDLGRVLRRPVGVGRAGRGQRGTTAPRMHSTTHSSSPRLRTQPCPRDQAPSRARRSGRPSCT 198          
BLAST of EWM23108.1 vs. NCBI_GenBank
Match: gi|1214692620|gb|OWZ07177.1| (Soluble pyridine nucleotide transhydrogenase, partial [Phytophthora megakarya])

HSP 1 Score: 80.1073 bits (196), Expect = 4.396e-16
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 0
Query:   54 SSPLQCRALSSTGGAGFYNFPPSAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTG 121
             +P +C+ L+ T          S H+DLIVIGSGPA QKCAIDS K G+ VA++DK   +GGVCVHTG
Sbjct:   32 EAPAECKPLTDT----LRELRASEHFDLIVIGSGPAGQKCAIDSAKHGKSVAIVDKRDMLGGVCVHTG 95          
BLAST of EWM23108.1 vs. NCBI_GenBank
Match: gi|298706388|emb|CBJ29397.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 82.0333 bits (201), Expect = 8.029e-15
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 0
Query:   46 HAPSSSLPSSPLQCRALSSTGGAGFYNFPPSAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTG 121
            HAPS    +S  Q  AL+ +          SAHYDL+++GSGPAAQKCAI+S K G+ V ++DK+SQ+GGVCVHTG
Sbjct:   20 HAPSLCGRASSTQAAALAKS----------SAHYDLVIVGSGPAAQKCAIESAKYGKSVCIVDKSSQLGGVCVHTG 85          
BLAST of EWM23108.1 vs. NCBI_GenBank
Match: gi|635371730|emb|CCI39993.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 81.6481 bits (200), Expect = 1.158e-14
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   72 NFPPSAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTG 121
            +   S HYDLIVIGSGPA QKCAIDS K G+ VA+IDKN   GGVCVHTG
Sbjct:   38 DLKASEHYDLIVIGSGPAGQKCAIDSAKHGKSVAIIDKNEMHGGVCVHTG 87          
BLAST of EWM23108.1 vs. NCBI_GenBank
Match: gi|325179632|emb|CCA14030.1| (soluble pyridine nucleotide transhydrogenase putative [Albugo laibachii Nc14])

HSP 1 Score: 80.8777 bits (198), Expect = 2.133e-14
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   72 NFPPSAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTG 121
            +   S HYDLIV+GSGPA QKCAIDS K G+ VA+IDKN   GGVCVHTG
Sbjct:   48 DLKASEHYDLIVVGSGPAGQKCAIDSAKHGKSVAIIDKNEMHGGVCVHTG 97          
BLAST of EWM23108.1 vs. NCBI_GenBank
Match: gi|673034636|ref|XP_008871279.1| (hypothetical protein, variant 2 [Aphanomyces invadans] >gi|574473250|gb|ETW00254.1| hypothetical protein, variant 2 [Aphanomyces invadans])

HSP 1 Score: 79.7221 bits (195), Expect = 6.224e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   72 NFPPSAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTG 121
            N   S H+DL+VIGSGPA QKCAIDS K G++VA+IDK    GGVCVHTG
Sbjct:   34 NLRASEHFDLVVIGSGPAGQKCAIDSAKHGKKVAIIDKKDMHGGVCVHTG 83          
BLAST of EWM23108.1 vs. NCBI_GenBank
Match: gi|673034632|ref|XP_008871277.1| (hypothetical protein H310_07641 [Aphanomyces invadans] >gi|574473248|gb|ETW00252.1| hypothetical protein H310_07641 [Aphanomyces invadans])

HSP 1 Score: 79.7221 bits (195), Expect = 6.306e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   72 NFPPSAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTG 121
            N   S H+DL+VIGSGPA QKCAIDS K G++VA+IDK    GGVCVHTG
Sbjct:   34 NLRASEHFDLVVIGSGPAGQKCAIDSAKHGKKVAIIDKKDMHGGVCVHTG 83          
BLAST of EWM23108.1 vs. NCBI_GenBank
Match: gi|673034634|ref|XP_008871278.1| (hypothetical protein, variant 1 [Aphanomyces invadans] >gi|574473249|gb|ETW00253.1| hypothetical protein, variant 1 [Aphanomyces invadans])

HSP 1 Score: 79.337 bits (194), Expect = 7.246e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   72 NFPPSAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTG 121
            N   S H+DL+VIGSGPA QKCAIDS K G++VA+IDK    GGVCVHTG
Sbjct:   34 NLRASEHFDLVVIGSGPAGQKCAIDSAKHGKKVAIIDKKDMHGGVCVHTG 83          
BLAST of EWM23108.1 vs. NCBI_GenBank
Match: gi|1173932726|gb|OQR84643.1| (soluble pyridine nucleotide transhydrogenase [Achlya hypogyna])

HSP 1 Score: 79.337 bits (194), Expect = 7.254e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   72 NFPPSAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTG 121
            N   S H+DL+VIGSGPA QKCAIDS K G++VA+IDK    GGVCVHTG
Sbjct:   41 NLRASEHFDLVVIGSGPAGQKCAIDSAKHGKKVAIIDKKDMHGGVCVHTG 90          
BLAST of EWM23108.1 vs. NCBI_GenBank
Match: gi|698796506|ref|XP_009831282.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574113951|gb|ETV79440.1| hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 78.9518 bits (193), Expect = 9.506e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   72 NFPPSAHYDLIVIGSGPAAQKCAIDSVKRGRRVAMIDKNSQMGGVCVHTG 121
            N   S H+DL+VIGSGPA QKCAIDS K G++VA+IDK    GGVCVHTG
Sbjct:   32 NLRASEHFDLVVIGSGPAGQKCAIDSAKHGKKVAIIDKKDMHGGVCVHTG 81          
The following BLAST results are available for this feature:
BLAST of EWM23108.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103978|gb|EWM23108.1|1.607e-139100.00soluble pyridine nucleotide transhydrogenase [Nann... [more]
gi|1214692620|gb|OWZ07177.1|4.396e-1654.41Soluble pyridine nucleotide transhydrogenase, part... [more]
gi|298706388|emb|CBJ29397.1|8.029e-1553.95conserved unknown protein [Ectocarpus siliculosus][more]
gi|635371730|emb|CCI39993.1|1.158e-1472.00unnamed protein product [Albugo candida][more]
gi|325179632|emb|CCA14030.1|2.133e-1470.00soluble pyridine nucleotide transhydrogenase putat... [more]
gi|673034636|ref|XP_008871279.1|6.224e-1468.00hypothetical protein, variant 2 [Aphanomyces invad... [more]
gi|673034632|ref|XP_008871277.1|6.306e-1468.00hypothetical protein H310_07641 [Aphanomyces invad... [more]
gi|673034634|ref|XP_008871278.1|7.246e-1468.00hypothetical protein, variant 1 [Aphanomyces invad... [more]
gi|1173932726|gb|OQR84643.1|7.254e-1468.00soluble pyridine nucleotide transhydrogenase [Achl... [more]
gi|698796506|ref|XP_009831282.1|9.506e-1468.00hypothetical protein, variant 1 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7585rna7585Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications