rna7583, rna7583 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7583
Unique Name	rna7583
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2973
Alignment location	CM002472.1:298672..299757 -

Link to JBrowse

Properties


Property Name	Value
Product	soluble pyridine nucleotide transhydrogenase
Orig transcript id	gnl\|cribi\|Naga_102104g1.4467.mrna
Orig protein id	gnl\|cribi\|Naga_102104g1.4467
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:298672..299757 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102104g1	gene7340	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7583	rna7583-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23110.1	cds7563	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:298672..299757-
coding sequence from alignment at CM002472.1:298672..299757-

mRNA sequence

>rna7583 ID=rna7583|Name=rna7583|organism=Nannochloropsis gaditana|type=mRNA|length=2973bp
AAAAAGTTTGGAAATTACTATCCGAGTCGTCCTCGACCAAAACACAGCTC
CCGCTGGGGTCCCAAATGCTATGTCCCGCCCCTTTGGATCCTTCGCTGGC
ATCAACACCTCTTTCCTTATGTCTTGGAGGTCCGGGGGTGATGGTGCCAG
TGAAAGTGCCCTCCCTGTGCGGCTTGGGGATTAAAACGAAGAGACAACTG
CCGCTGTGACGGAATGCTCGTGTCGTTCTCAGACCGGGTGGCTCCCACGA
GCTTCGCGGGGACCTCCGGCACGGAGTCAAAGCTGACGAGCCAGAGAGTA
GTGATACTCAGCATCGTGTCCATGGCCTTTTATCCAGGTCTTATCCGGAT
TTATTCCATGTTCTGTCCCTTGGCTTTGACAGGCCCGTGTCAACTTCAAG
GACAGGCAAAGGAGGTGCCCTTCCTTCTCTTCCACTTGTCGATTCCTCCT
CGACTTAGAGTGATGCACCACAACATGCGTCCTCTCGCATTCGTCTCTCA
TATCCCTTATGTATGTACAGCAGGAGTTGCAACGCCCAACGGGAAACCAT
CGCGCAAACCAGCTAGCGAAAAGGTGGCAGAACATAACCGACTGCTTCGT
GACGCTCCACACGCAAACTCAACATACAGCCCCACCGCCCCAGGACTCAA
AATGCTGCACGAAATGGCAGAGGAGGCTCTCGTCTTATTCCATAGAGGTA
GTGCTGGAGGACGTAAGGATCATCACGACGATGGCGATGGTGGGTGGCGG
TCTCTAGCCAATCCAACAACCCGTGATGGCGTCTATCGACGGAGCCTCTT
CCCTTCCCTGTGGCTTGAAGAGGAGGAAGAGGAGCAGGAGGTGGAACAGA
GGGACACGTGTGACAAAGAAATGACGCACGTGGAAGACAAAGTGGGCAGC
GAAAGCGACGGAGAAGGCTCGAGCTTTGGTTTGATGGAAGCTTTGCCCCA
AGACGCGGTGCTCCACGTGTTGAGTATGTTGGAGGCTGAGGACATGGCAC
GTTTGGGGGCGACTGGGAAAGACTTGCGAACGCGGGTGATGGGGAGCGAG
GCGACCTGGCCCTGGCTCCAAGTTTGCCTGCAGGCATGGAACCTCTCAAC
GACCACTCCCTACGCCGCGCTTTGGACCTCCTCGCCTCTCCCACCCGCCG
CGGTCCTTTCTCGCCTTTATCCCCTGATCGTCCCGTGGCCGGCGGAGATC
GAAACGGCGACCCGAAAACCGTTACGCCGGACCCCATCGACGATGAGTTT
GGAGGGAGCACGTCGGACGGGCGTGGGCTTCAAGGTGATGGGTCACCACA
GGGTCCAATACGTGGGAGAGGGTTTGGGAGCAGGGAACCGGGCGATCCGC
TCCACGGTGCCTTTCCCCTCCCTGGAGAGTGTCTGGGAGGGAGGAAGGGT
CCGACCGAGGGCGGGAAGGACGGAGGGACAGGACCAAGGGGCGAGAAAGG
GCCATGGGGAAGGCCGGGGCGGGGAAGAAACCGTGTGGGCGCGTCTCTCT
AGGCTCACGCGTCAATTCCAGCTTCCCCCTCCCCCCGCCCTCCCTCCCTC
CCTCGCGGCTGCCGCGGCCGCTGCTGCTGCTGCCATGGCGGGAGGCGGTG
GCAGGGGAAGTAATGAGGTGGGCAACAGACGTGGTGCACTTCCGTACGCG
CAGCTCTTCTCCACCTCGGCCCCAGCGGCTCTGTCGAGCTTCATGCTGGG
CGGGGAGCGAGAGGAGGAGGAGAGGGAGGAGGACGCAGTTGAAGCGGGAG
GGGAGGGAGCAGGGGGGGAGGCAGGGGCCGACAACGACGGCGCCCGCTTT
GTGTCGTGGGGGGAGGGAGGGGAGGGAGGTTCGGGGGGTGGGCTTCTTGG
CCGGGGCTGTGGGCCGATGGAGGAAGAAGCCCCTCCCTCCCCTTCGCCCG
GGCCGTGCGCGTTCTCGGCGGCTTGGGTCAGGAAGGAGGGGAAGGTGGGG
GGGGGGGAGACGGGCTGGTGGTGGACGTGGCGCCGCGTCTGGTGGGTTAC
TACGAGGTGGCAATCATGCTCCGGGAGGAGGAGGAGGACGGAGGGGAGGG
CAGGCAGCCTCCTCACCCCCCGGGACCGGCCTTGCCCGTGGCGTTTGTGC
CGACGCCGGTGGTGGAAGGGAACGGGGAAGGGGGGGAGGAGGAAGGGGAG
GAGGACTTCTCGCTGCTCTTTCTGGAAGAAGAAGAAGAAGAGGAGGACGA
AGAGGAGGACGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGG
AGGACGGGTGGGAGCCCCCGCCTCCAGGGCCGGAGGCTCCTCACGGCCCC
GCCCCCCTCAACCCCAGCAACAACTGCGTGGCCGTGGGGCTGGCCAGCGG
AAACTTCCCCTTGGAGGGCTACATGCCCGGGTGGGACGCGTCCTCCTACG
CCTTCCACTCGGACGACGGCGGCATCTTCCACGGCACCGGGATTAAGGTG
CGGTACTACGGCTCGCCCTACGGCCCGGGTGACGTGGTAGGCTGTGGACT
CGACTACAGGAGCAAGGAAATTTTCTTCACGCTCAATGGGGAGTACTTGG
GCGTCGCCTTCAAGGTCGGGGAGGAGGGCGGGGAAGAGGGCGGGGGGGAG
GGCGGAGGTGCGAAGGCCCCTCTGTACCCGACCGTAGGCATCGATTCGCT
CCACCCTGTCCAGTTGAACTTCGGGGAGGAACCTTTCGTCTTCGACTTGC
AGGCTTACATGGAGGGAGGAACGGGCCCGAAGTGAGGGGAGAGGTCACCA
CAAGAGGGTAGAGGAGGAAGGAGGGGGAGGGGGAGGCAGGCTTAGGAGGG
CGAAGAGGGGCGCGGACTGTACAGAGGGTATGGCGCTCTTTTCCGCCAAC
GGCGTCGGAATGGAAAGGGAAGGGAAGGAGCTGGGCAAGATTGTGGCCGG
CGGGGAGGAGGAGGGTGGGAGAGGGGGTGGAGGCCATGCGGAGGGTCTTA
AGGAGGGTGACAGGAGGAGGGGG

protein sequence of rna7583

>rna7583-protein ID=rna7583-protein|Name=rna7583|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MWGDFEAIPEHSMAAEQGEEVKSVLQQGGFLGRDTERLFPYGIYTIPEIS
MIGKTEEQLTAEKVPYEVGIANYKELAKGQMLGGMDGFLKLIFSTEDFRI
LGVHAIGEGATEIVHIGQVVMAAGGSVHYFVDAVFNFPTLAEAYNVAAHN
GLKNMGINV

mRNA from alignment at CM002472.1:298672..299757-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7583 ID=rna7583|Name=rna7583|organism=Nannochloropsis gaditana|type=mRNA|length=1086bp|location=Sequence derived from alignment at CM002472.1:298672..299757- (Nannochloropsis gaditana)
CCCAAGCGTCCCCATACACATATTGACACTCGCCCTCCTTCCTCCCTTCC
TCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCTTCAGCTGCCACATG
TGGGGGGATTTCGAAGCCATCCCCGAACACTCCATGGCAGCGGAGCAGGG
CGAGGAAGTGAAGAGCGTGCTGCAGCAAGGGGGGTTCCTCGGCCGGGACA
CCGAGCGCCTCTTTCCCTACGGCATCTACACGATTCCCGAAATCAGCATG
GTCCGTCTTCCCTCCCTCCCCCCGCCCTCCCTCCCTCCCTCCTTGTTTCC
CTTGTTGCCTTCCCTCCAATCTCATCCGCGTTGGAACTCGGACGGGCACC
TCTTTCCCTCCCCCTCGTCCTTCCGTAGATCGGCAAGACGGAAGAACAGC
TGACGGCCGAGAAGGTTCCGTACGAGGTAGGGATCGCCAACTACAAAGAG
CTGGCGAAGGGGCAGATGCTGGGCGGTATGGACGGGTTCTTGAAGCTGAT
ATTCTCCACGGAAGGTGCGTCCGTCCCTTTCTCCCTCCCTTGGCCTCCCT
CCCTTCCTCCCGCCTTTTACCCCGGCTTATGATCCTCCTTTCCTCCCCTG
ACCCCTCCTTAAACTTTGCATTCATTACCAGCTCACCCCACGCCCCGCCC
TCCGTCCCCCCCCCCCTCCCCACCTTCCCTCCTCCTTATTCCCGCCCCAT
CCATTATAGATTTTCGGATCCTGGGTGTCCACGCCATCGGGGAGGGCGCC
ACGGAGATCGTCCACATCGGGCAGGTGGTGATGGCGGCGGGGGGATCGGT
GCACTACTTTGTCGACGCCGTCTTCAACTTCCCCACCCTGGCCGAGGCCT
ACAATGTGGCAGCTCACAACGGGCTCAAGAACATGGGCATCAACGTGTAG
AGAGAGGGAAGGAAAGAGGGAGGGAGGAAGAGAGGGAGGGAGGGAGGAGG
AGGGAGGGAAGGAAGGAGATGCCAGAATGAAAGCCTCGATGAGCGGGGAA
GGTGGAGGGGAGGGGATTAAAAAAGAGGTAGGAAGAGCGGTAGAGGAGTG
GAGACGAGGGCGGTGTACAGAAGGAAGGGGGCGAGG

Coding sequence (CDS) from alignment at CM002472.1:298672..299757-

>rna7583 ID=rna7583|Name=rna7583|organism=Nannochloropsis gaditana|type=CDS|length=1440bp|location=Sequence derived from alignment at CM002472.1:298672..299757- (Nannochloropsis gaditana)
ATTTTCGGATCCTGGGTGTCCACGCCATCGGGGAGGGCGCCACGGAGATC
GTCCACATCGGGCAGGTGGTGATGGCGGCGGGGGGATCGGTGCACTACTT
TGTCGACGCCGTCTTCAACTTCCCCACCCTGGCCGAGGCCTACAATGTGG
CAGCTCACAACGGGCTCAAGAACATGGGCATCAACGTGTAGATCGGCAAG
ACGGAAGAACAGCTGACGGCCGAGAAGGTTCCGTACGAGGTAGGGATCGC
CAACTACAAAGAGCTGGCGAAGGGGCAGATGCTGGGCGGTATGGACGGGT
TCTTGAAGCTGATATTCTCCACGGAAGATGTGGGGGGATTTCGAAGCCAT
CCCCGAACACTCCATGGCAGCGGAGCAGGGCGAGGAAGTGAAGAGCGTGC
TGCAGCAAGGGGGGTTCCTCGGCCGGGACACCGAGCGCCTCTTTCCCTAC
GGCATCTACACGATTCCCGAAATCAGCATGATTTTCGGATCCTGGGTGTC
CACGCCATCGGGGAGGGCGCCACGGAGATCGTCCACATCGGGCAGGTGGT
GATGGCGGCGGGGGGATCGGTGCACTACTTTGTCGACGCCGTCTTCAACT
TCCCCACCCTGGCCGAGGCCTACAATGTGGCAGCTCACAACGGGCTCAAG
AACATGGGCATCAACGTGTAGATCGGCAAGACGGAAGAACAGCTGACGGC
CGAGAAGGTTCCGTACGAGGTAGGGATCGCCAACTACAAAGAGCTGGCGA
AGGGGCAGATGCTGGGCGGTATGGACGGGTTCTTGAAGCTGATATTCTCC
ACGGAAGATGTGGGGGGATTTCGAAGCCATCCCCGAACACTCCATGGCAG
CGGAGCAGGGCGAGGAAGTGAAGAGCGTGCTGCAGCAAGGGGGGTTCCTC
GGCCGGGACACCGAGCGCCTCTTTCCCTACGGCATCTACACGATTCCCGA
AATCAGCATGATTTTCGGATCCTGGGTGTCCACGCCATCGGGGAGGGCGC
CACGGAGATCGTCCACATCGGGCAGGTGGTGATGGCGGCGGGGGGATCGG
TGCACTACTTTGTCGACGCCGTCTTCAACTTCCCCACCCTGGCCGAGGCC
TACAATGTGGCAGCTCACAACGGGCTCAAGAACATGGGCATCAACGTGTA
GATCGGCAAGACGGAAGAACAGCTGACGGCCGAGAAGGTTCCGTACGAGG
TAGGGATCGCCAACTACAAAGAGCTGGCGAAGGGGCAGATGCTGGGCGGT
ATGGACGGGTTCTTGAAGCTGATATTCTCCACGGAAGATGTGGGGGGATT
TCGAAGCCATCCCCGAACACTCCATGGCAGCGGAGCAGGGCGAGGAAGTG
AAGAGCGTGCTGCAGCAAGGGGGGTTCCTCGGCCGGGACACCGAGCGCCT
CTTTCCCTACGGCATCTACACGATTCCCGAAATCAGCATG

Synonyms

Publications