rna7575, rna7575 (mRNA) Nannochloropsis gaditana

Overview
Namerna7575
Unique Namerna7575
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length588
Alignment locationCM002472.1:282029..282983 -

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Properties
Property NameValue
Productcleavage and polyadenylation specificity factor subunit 3
Orig transcript idgnl|cribi|Naga_100316g1.2354.mrna
Orig protein idgnl|cribi|Naga_100316g1.2354
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:282029..282983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100316g1gene7332Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7575rna7575-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23111.1cds7555Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7575 ID=rna7575|Name=rna7575|organism=Nannochloropsis gaditana|type=mRNA|length=588bp
ATGCGGAAGGTGCGCGCACAGGTCATCGTCTTGGTGCACGGGGAGCAGAA
CCAGATGAACGAGCTCAAACGCGCCTTGGTCCGGACGATCGGCTCCGACA
ACCCGGCGCAGGCCGGCTACGGCGCCAACATTCTCACGCCCGACCTCTGC
AGCAACATTCAACTCACGATCCCGCGACGGAAATCGGCGCGCATTCTGGG
GACACTGGCTGAGCAGCCCCTCCAAGCGGGCAAGCCCCTGTCCGACGCCG
TTCTGGTTTCGCGCAATTTCACCACCCGCCTGCTCAACCCCGCCGACCTC
CCCGCCTACACCCAGTTGCGGGCGGGGGGGGTGAGCGAGAAAGTCCACTT
CCCTTTCCACCAGTCCTTGGGAACCCTGAGGGCCTTCCTGGAGGAGCTCT
TCGAGGGCGAAATCGAGGAGCTGGCGGGGAGGGAGGCAGCCTTCCCCGCG
CTTCCCTCCCTGCACATGAACGATGGGAACAAAGGAGCAGGTGGCACGGG
GGCGGGGAGGAAACGGGCGCTGGGGAAGGAGGAAGGGGAGGGGGAGGGAG
CAGAGGGAGGGGCGGGTGCCTTGAGGATCAACGGATGA
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protein sequence of rna7575

>rna7575-protein ID=rna7575-protein|Name=rna7575|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp
MAYKRSHYHPTRLSSNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIML
DCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQ
GGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYT
EEELQAGAPQDHGCSSIRISNNKELAVCCVKEHLKSPQPSSWAWARGASG
RQVLVL
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mRNA from alignment at CM002472.1:282029..282983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7575 ID=rna7575|Name=rna7575|organism=Nannochloropsis gaditana|type=mRNA|length=955bp|location=Sequence derived from alignment at CM002472.1:282029..282983- (Nannochloropsis gaditana)
ATGGCCTACAAGAGGAGCCATTACCACCCCACACGCCTCAGCAGTAACGA
GGAGGATGAAGACACGGTGTATTTTACACCCTTGGGCGCAGCCAAAGAAG
TCGGTCGCTCCTGTTTAATCCTCCGCTACAAAGGGAGGACCATCATGTTG
GACTGCGGCATCCACCCAGGCCGCACTGGCGACGACGCCCTCCCTTTCTT
TGACAGCGGTCCTGACGCGGAAGAAATCGACATCATCCTCATCTCGCACT
TTCACTTGGACCATGCTGCGTCATTGCCATATTTCACGGAGAAGGTCCAA
GGTGGGGCGTTTAAGGGCAGGATCTTTGCCACGCATCCGACTAAAGCCAT
TATGAGGCTGATGCTCCAGAACCACATCCGGACGGACTCGGTTCGTTTAG
CTGCCGATGGGACCAGTGCAGACGAGGGGGCGGAGGCGCCCTTGTACACG
GAGGAGGAGCTGCAGGCGTGCTTGGATAAAATCGAGGTGATCGACTTCCA
ACAGGTGCGAGATGAAAGGAGAGAGGGAGGTGGGAGGTTGGGAGGGTAGC
ATTCCTGGAAATTTTACGAAGGGGGGCTCCTCAAGATCATGGGTGCTCTT
CGATACGGATTTCCAACAATAAAGAGCTGGCTGTCTGCTGCGTTAAGGAA
CACCTTAAAAGCCCTCAGCCCTCCTCCTGGGCCTGGGGTTGCGGAGGCCG
CACACCTTCCTGCTTCCCTCCTCCCTCCCTCCCTCGCTTCCTCCGCCCTT
CCCTCGTCCAATGTCCTTTTCTTCCTTTCCCTCCCATGTCTCTAGACCAT
GCAAACACACGCATGCTGGTTCCTGCCCCGTGGCTGCGACCGCCCCCCCT
CCCCCTCAACCCCGTGGCCTGATCCCTCCCTTTGCCCCTCCCTCCCCACC
CCTTTCCCCTCCACCAGCGCGTGGAGCATCGGGGCGTCAAGTTCTGGTGC
TATAA
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Coding sequence (CDS) from alignment at CM002472.1:282029..282983-

>rna7575 ID=rna7575|Name=rna7575|organism=Nannochloropsis gaditana|type=CDS|length=1863bp|location=Sequence derived from alignment at CM002472.1:282029..282983- (Nannochloropsis gaditana)
CGCGTGGAGCATCGGGGCGTCAAGTTCTGGTGCTATAAGGGGGCTCCTCA
AGATCATGGGTGCTCTTCGATACGGATTTCCAACAATAAAGAGCTGGCTG
TCTGCTGCGTTAAGGAACACCTTAAAAGCCCTCAGCCCTCCTCCTGGGCC
TGGGATGGCCTACAAGAGGAGCCATTACCACCCCACACGCCTCAGCAGTA
ACGAGGAGGATGAAGACACGGTGTATTTTACACCCTTGGGCGCAGCCAAA
GAAGTCGGTCGCTCCTGTTTAATCCTCCGCTACAAAGGGAGGACCATCAT
GTTGGACTGCGGCATCCACCCAGGCCGCACTGGCGACGACGCCCTCCCTT
TCTTTGACAGCGGTCCTGACGCGGAAGAAATCGACATCATCCTCATCTCG
CACTTTCACTTGGACCATGCTGCGTCATTGCCATATTTCACGGAGAAGGT
CCAAGGTGGGGCGTTTAAGGGCAGGATCTTTGCCACGCATCCGACTAAAG
CCATTATGAGGCTGATGCTCCAGAACCACATCCGGACGGACTCGGTTCGT
TTAGCTGCCGATGGGACCAGTGCAGACGAGGGGGCGGAGGCGCCCTTGTA
CACGGAGGAGGAGCTGCAGGCCGCGTGGAGCATCGGGGCGTCAAGTTCTG
GTGCTATAAGGGGGCTCCTCAAGATCATGGGTGCTCTTCGATACGGATTT
CCAACAATAAAGAGCTGGCTGTCTGCTGCGTTAAGGAACACCTTAAAAGC
CCTCAGCCCTCCTCCTGGGCCTGGGATGGCCTACAAGAGGAGCCATTACC
ACCCCACACGCCTCAGCAGTAACGAGGAGGATGAAGACACGGTGTATTTT
ACACCCTTGGGCGCAGCCAAAGAAGTCGGTCGCTCCTGTTTAATCCTCCG
CTACAAAGGGAGGACCATCATGTTGGACTGCGGCATCCACCCAGGCCGCA
CTGGCGACGACGCCCTCCCTTTCTTTGACAGCGGTCCTGACGCGGAAGAA
ATCGACATCATCCTCATCTCGCACTTTCACTTGGACCATGCTGCGTCATT
GCCATATTTCACGGAGAAGGTCCAAGGTGGGGCGTTTAAGGGCAGGATCT
TTGCCACGCATCCGACTAAAGCCATTATGAGGCTGATGCTCCAGAACCAC
ATCCGGACGGACTCGGTTCGTTTAGCTGCCGATGGGACCAGTGCAGACGA
GGGGGCGGAGGCGCCCTTGTACACGGAGGAGGAGCTGCAGGCCGCGTGGA
GCATCGGGGCGTCAAGTTCTGGTGCTATAAGGGGGCTCCTCAAGATCATG
GGTGCTCTTCGATACGGATTTCCAACAATAAAGAGCTGGCTGTCTGCTGC
GTTAAGGAACACCTTAAAAGCCCTCAGCCCTCCTCCTGGGCCTGGGATGG
CCTACAAGAGGAGCCATTACCACCCCACACGCCTCAGCAGTAACGAGGAG
GATGAAGACACGGTGTATTTTACACCCTTGGGCGCAGCCAAAGAAGTCGG
TCGCTCCTGTTTAATCCTCCGCTACAAAGGGAGGACCATCATGTTGGACT
GCGGCATCCACCCAGGCCGCACTGGCGACGACGCCCTCCCTTTCTTTGAC
AGCGGTCCTGACGCGGAAGAAATCGACATCATCCTCATCTCGCACTTTCA
CTTGGACCATGCTGCGTCATTGCCATATTTCACGGAGAAGGTCCAAGGTG
GGGCGTTTAAGGGCAGGATCTTTGCCACGCATCCGACTAAAGCCATTATG
AGGCTGATGCTCCAGAACCACATCCGGACGGACTCGGTTCGTTTAGCTGC
CGATGGGACCAGTGCAGACGAGGGGGCGGAGGCGCCCTTGTACACGGAGG
AGGAGCTGCAGGC
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Synonyms
Publications