EWM23111.1, cds7555 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|585103984|gb|EWM23111.1| (cleavage and polyadenylation specificity factor subunit 3 [Nannochloropsis gaditana]) HSP 1 Score: 431.409 bits (1108), Expect = 4.114e-153 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
Query: 1 MAYKRSHYHPTRLSSNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQAGAPQDHGCSSIRISNNKELAVCCVKEHLKSPQPSSWAWARGASGRQVLVL 206
MAYKRSHYHPTRLSSNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQAGAPQDHGCSSIRISNNKELAVCCVKEHLKSPQPSSWAWARGASGRQVLVL
Sbjct: 1 MAYKRSHYHPTRLSSNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQAGAPQDHGCSSIRISNNKELAVCCVKEHLKSPQPSSWAWARGASGRQVLVL 206
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|553179772|ref|XP_005852759.1| (cleavage and polyadenylation specificity factor subunit 3 [Nannochloropsis gaditana CCMP526] >gi|422295773|gb|EKU23072.1| cleavage and polyadenylation specificity factor subunit 3 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 324.709 bits (831), Expect = 3.250e-111 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
Query: 1 MAYKRSHYHPTRLSSNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQA 156
MAYKRSHYHPTRLSSNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQA
Sbjct: 1 MAYKRSHYHPTRLSSNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQA 156
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|397639513|gb|EJK73612.1| (hypothetical protein THAOC_04754 [Thalassiosira oceanica]) HSP 1 Score: 153.295 bits (386), Expect = 7.378e-41 Identity = 73/137 (53.28%), Postives = 100/137 (72.99%), Query Frame = 0
Query: 20 EDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQA 156
EDT+ TPLG+ +EVGRSC +L ++G T++LDCGIHPG G LPFFD D E +D++L++HFHLDHAASLPYFTE+ F+GR+F THPTKA++RL+L +++R +V+ + G + E LYTE ELQ+
Sbjct: 2 EDTMQITPLGSGQEVGRSCHLLTFRGTTVLLDCGIHPGYDGMAGLPFFDR-VDPESVDVLLVTHFHLDHAASLPYFTERT---GFRGRVFMTHPTKAVIRLLLGDYLRLMAVKHGSSG--GELNPEDVLYTEAELQS 132
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|1183381115|gb|ORY06542.1| (Metallo-hydrolase/oxidoreductase [Neocallimastix californiae]) HSP 1 Score: 153.295 bits (386), Expect = 6.011e-40 Identity = 74/127 (58.27%), Postives = 89/127 (70.08%), Query Frame = 0
Query: 16 NEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADE 142
NE D + TPLGA EVGRSC++L YKG+TIMLDCGIHP TG +LPFFD D EIDI+LI+HFHLDHAASLPYF EK FKGR+F THPTKAI + ++ +++R +V D DE
Sbjct: 14 NENQTDILKITPLGAGNEVGRSCILLEYKGKTIMLDCGIHPAYTGLSSLPFFDE-IDPSEIDIVLITHFHLDHAASLPYFLEKT---TFKGRVFMTHPTKAIYKWLISDYMRVSNV--VVDDILYDE 134
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|953503490|emb|CEG35500.1| (cleavage and polyadenylation specificity factor subunit 3 [Plasmopara halstedii]) HSP 1 Score: 154.066 bits (388), Expect = 7.412e-40 Identity = 69/123 (56.10%), Postives = 96/123 (78.05%), Query Frame = 0
Query: 12 RLSSNEEDEDTVY-FTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRL 133
RL+ DE + TPLGA EVGRSC++L++KG+TIMLDCG+HPG +G +LPFFD G +AEEID++LI+HFH+DH A+LP+FTEK FKGR+F THPTKA+M++ML++ +R ++ +
Sbjct: 5 RLAEEAADERHIMRITPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFD-GVEAEEIDLLLITHFHIDHVAALPHFTEKTN---FKGRVFMTHPTKAVMQMMLRDFLRVSNISV 123
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|223997482|ref|XP_002288414.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975522|gb|EED93850.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 151.754 bits (382), Expect = 1.491e-39 Identity = 72/137 (52.55%), Postives = 99/137 (72.26%), Query Frame = 0
Query: 20 EDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQA 156
ED + TPLG+ +EVGRSC +L ++ TI+LDCGIHPG G LPFFD D E++D++LI+HFHLDHAASLPYFTE+ FKGRIF THPTKA++RL+L ++++ ++ + G D+ + LYTE +LQ+
Sbjct: 2 EDIMTITPLGSGQEVGRSCHLLTFRSTTILLDCGIHPGYDGMAGLPFFDR-VDPEQVDVLLITHFHLDHAASLPYFTERT---GFKGRIFMTHPTKAVIRLLLGDYLKLMMMKKGSGGADKDDNQDV-LYTEADLQS 133
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|570316575|gb|ETO64523.1| (hypothetical protein F444_17968 [Phytophthora parasitica P1976]) HSP 1 Score: 151.369 bits (381), Expect = 1.537e-39 Identity = 68/123 (55.28%), Postives = 95/123 (77.24%), Query Frame = 0
Query: 12 RLSSNEEDEDTVY-FTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRL 133
RL+ DE + PLGA EVGRSC++L++KG+TIMLDCG+HPG +G +LPFFD G +AEEID++LI+HFH+DH A+LP+FTEK FKGR+F THPTKA+M++ML++ +R ++ +
Sbjct: 5 RLAEEAADERHIMRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFD-GVEAEEIDLLLITHFHIDHVAALPHFTEKTN---FKGRVFMTHPTKAVMQMMLRDFLRVSNISV 123
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|301111988|ref|XP_002905073.1| (cleavage and polyadenylation specificity factor subunit 3 [Phytophthora infestans T30-4] >gi|262095403|gb|EEY53455.1| cleavage and polyadenylation specificity factor subunit 3 [Phytophthora infestans T30-4]) HSP 1 Score: 152.525 bits (384), Expect = 2.742e-39 Identity = 68/123 (55.28%), Postives = 95/123 (77.24%), Query Frame = 0
Query: 12 RLSSNEEDEDTVY-FTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRL 133
RL+ DE + PLGA EVGRSC++L++KG+TIMLDCG+HPG +G +LPFFD G +AEEID++LI+HFH+DH A+LP+FTEK FKGR+F THPTKA+M++ML++ +R ++ +
Sbjct: 5 RLAEEAADERHIMRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFD-GVEAEEIDLLLITHFHIDHVAALPHFTEKTN---FKGRVFMTHPTKAVMQMMLRDFLRVSNISV 123
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|568038404|gb|ETM35936.1| (hypothetical protein L914_17253 [Phytophthora parasitica]) HSP 1 Score: 152.525 bits (384), Expect = 3.035e-39 Identity = 68/123 (55.28%), Postives = 95/123 (77.24%), Query Frame = 0
Query: 12 RLSSNEEDEDTVY-FTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRL 133
RL+ DE + PLGA EVGRSC++L++KG+TIMLDCG+HPG +G +LPFFD G +AEEID++LI+HFH+DH A+LP+FTEK FKGR+F THPTKA+M++ML++ +R ++ +
Sbjct: 5 RLAEEAADERHIMRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFD-GVEAEEIDLLLITHFHIDHVAALPHFTEKTN---FKGRVFMTHPTKAVMQMMLRDFLRVSNISV 123
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|1214698942|gb|OWZ11848.1| (Cleavage and polyadenylation specificity factor protein [Phytophthora megakarya]) HSP 1 Score: 152.525 bits (384), Expect = 3.218e-39 Identity = 68/123 (55.28%), Postives = 95/123 (77.24%), Query Frame = 0
Query: 12 RLSSNEEDEDTVY-FTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRL 133
RL+ DE + PLGA EVGRSC++L++KG+TIMLDCG+HPG +G +LPFFD G +AEEID++LI+HFH+DH A+LP+FTEK FKGR+F THPTKA+M++ML++ +R ++ +
Sbjct: 5 RLAEEAADERHIMRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFD-GVEAEEIDLLLITHFHIDHVAALPHFTEKTN---FKGRVFMTHPTKAVMQMMLRDFLRVSNISV 123 The following BLAST results are available for this feature:
BLAST of EWM23111.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|