EWM23111.1, cds7555 (CDS) Nannochloropsis gaditana

Overview
NameEWM23111.1
Unique Namecds7555
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:282517..282983 -
Alignment locationCM002472.1:282297..282412 -
Alignment locationCM002472.1:282029..282066 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23111.1
Productcleavage and polyadenylation specificity factor subunit 3
Orig transcript idgnl|cribi|Naga_100316g1.2354.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:282517..282983 -
CM002472.1supercontigCM002472.1:282297..282412 -
CM002472.1supercontigCM002472.1:282029..282066 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR001279Beta-lactamas-like
Homology
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|585103984|gb|EWM23111.1| (cleavage and polyadenylation specificity factor subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 431.409 bits (1108), Expect = 4.114e-153
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
Query:    1 MAYKRSHYHPTRLSSNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQAGAPQDHGCSSIRISNNKELAVCCVKEHLKSPQPSSWAWARGASGRQVLVL 206
            MAYKRSHYHPTRLSSNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQAGAPQDHGCSSIRISNNKELAVCCVKEHLKSPQPSSWAWARGASGRQVLVL
Sbjct:    1 MAYKRSHYHPTRLSSNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQAGAPQDHGCSSIRISNNKELAVCCVKEHLKSPQPSSWAWARGASGRQVLVL 206          
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|553179772|ref|XP_005852759.1| (cleavage and polyadenylation specificity factor subunit 3 [Nannochloropsis gaditana CCMP526] >gi|422295773|gb|EKU23072.1| cleavage and polyadenylation specificity factor subunit 3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 324.709 bits (831), Expect = 3.250e-111
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
Query:    1 MAYKRSHYHPTRLSSNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQA 156
            MAYKRSHYHPTRLSSNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQA
Sbjct:    1 MAYKRSHYHPTRLSSNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQA 156          
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|397639513|gb|EJK73612.1| (hypothetical protein THAOC_04754 [Thalassiosira oceanica])

HSP 1 Score: 153.295 bits (386), Expect = 7.378e-41
Identity = 73/137 (53.28%), Postives = 100/137 (72.99%), Query Frame = 0
Query:   20 EDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQA 156
            EDT+  TPLG+ +EVGRSC +L ++G T++LDCGIHPG  G   LPFFD   D E +D++L++HFHLDHAASLPYFTE+     F+GR+F THPTKA++RL+L +++R  +V+  + G   +   E  LYTE ELQ+
Sbjct:    2 EDTMQITPLGSGQEVGRSCHLLTFRGTTVLLDCGIHPGYDGMAGLPFFDR-VDPESVDVLLVTHFHLDHAASLPYFTERT---GFRGRVFMTHPTKAVIRLLLGDYLRLMAVKHGSSG--GELNPEDVLYTEAELQS 132          
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|1183381115|gb|ORY06542.1| (Metallo-hydrolase/oxidoreductase [Neocallimastix californiae])

HSP 1 Score: 153.295 bits (386), Expect = 6.011e-40
Identity = 74/127 (58.27%), Postives = 89/127 (70.08%), Query Frame = 0
Query:   16 NEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADE 142
            NE   D +  TPLGA  EVGRSC++L YKG+TIMLDCGIHP  TG  +LPFFD   D  EIDI+LI+HFHLDHAASLPYF EK     FKGR+F THPTKAI + ++ +++R  +V    D    DE
Sbjct:   14 NENQTDILKITPLGAGNEVGRSCILLEYKGKTIMLDCGIHPAYTGLSSLPFFDE-IDPSEIDIVLITHFHLDHAASLPYFLEKT---TFKGRVFMTHPTKAIYKWLISDYMRVSNV--VVDDILYDE 134          
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|953503490|emb|CEG35500.1| (cleavage and polyadenylation specificity factor subunit 3 [Plasmopara halstedii])

HSP 1 Score: 154.066 bits (388), Expect = 7.412e-40
Identity = 69/123 (56.10%), Postives = 96/123 (78.05%), Query Frame = 0
Query:   12 RLSSNEEDEDTVY-FTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRL 133
            RL+    DE  +   TPLGA  EVGRSC++L++KG+TIMLDCG+HPG +G  +LPFFD G +AEEID++LI+HFH+DH A+LP+FTEK     FKGR+F THPTKA+M++ML++ +R  ++ +
Sbjct:    5 RLAEEAADERHIMRITPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFD-GVEAEEIDLLLITHFHIDHVAALPHFTEKTN---FKGRVFMTHPTKAVMQMMLRDFLRVSNISV 123          
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|223997482|ref|XP_002288414.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975522|gb|EED93850.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 151.754 bits (382), Expect = 1.491e-39
Identity = 72/137 (52.55%), Postives = 99/137 (72.26%), Query Frame = 0
Query:   20 EDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEGAEAPLYTEEELQA 156
            ED +  TPLG+ +EVGRSC +L ++  TI+LDCGIHPG  G   LPFFD   D E++D++LI+HFHLDHAASLPYFTE+     FKGRIF THPTKA++RL+L ++++   ++  + G   D+  +  LYTE +LQ+
Sbjct:    2 EDIMTITPLGSGQEVGRSCHLLTFRSTTILLDCGIHPGYDGMAGLPFFDR-VDPEQVDVLLITHFHLDHAASLPYFTERT---GFKGRIFMTHPTKAVIRLLLGDYLKLMMMKKGSGGADKDDNQDV-LYTEADLQS 133          
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|570316575|gb|ETO64523.1| (hypothetical protein F444_17968 [Phytophthora parasitica P1976])

HSP 1 Score: 151.369 bits (381), Expect = 1.537e-39
Identity = 68/123 (55.28%), Postives = 95/123 (77.24%), Query Frame = 0
Query:   12 RLSSNEEDEDTVY-FTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRL 133
            RL+    DE  +    PLGA  EVGRSC++L++KG+TIMLDCG+HPG +G  +LPFFD G +AEEID++LI+HFH+DH A+LP+FTEK     FKGR+F THPTKA+M++ML++ +R  ++ +
Sbjct:    5 RLAEEAADERHIMRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFD-GVEAEEIDLLLITHFHIDHVAALPHFTEKTN---FKGRVFMTHPTKAVMQMMLRDFLRVSNISV 123          
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|301111988|ref|XP_002905073.1| (cleavage and polyadenylation specificity factor subunit 3 [Phytophthora infestans T30-4] >gi|262095403|gb|EEY53455.1| cleavage and polyadenylation specificity factor subunit 3 [Phytophthora infestans T30-4])

HSP 1 Score: 152.525 bits (384), Expect = 2.742e-39
Identity = 68/123 (55.28%), Postives = 95/123 (77.24%), Query Frame = 0
Query:   12 RLSSNEEDEDTVY-FTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRL 133
            RL+    DE  +    PLGA  EVGRSC++L++KG+TIMLDCG+HPG +G  +LPFFD G +AEEID++LI+HFH+DH A+LP+FTEK     FKGR+F THPTKA+M++ML++ +R  ++ +
Sbjct:    5 RLAEEAADERHIMRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFD-GVEAEEIDLLLITHFHIDHVAALPHFTEKTN---FKGRVFMTHPTKAVMQMMLRDFLRVSNISV 123          
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|568038404|gb|ETM35936.1| (hypothetical protein L914_17253 [Phytophthora parasitica])

HSP 1 Score: 152.525 bits (384), Expect = 3.035e-39
Identity = 68/123 (55.28%), Postives = 95/123 (77.24%), Query Frame = 0
Query:   12 RLSSNEEDEDTVY-FTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRL 133
            RL+    DE  +    PLGA  EVGRSC++L++KG+TIMLDCG+HPG +G  +LPFFD G +AEEID++LI+HFH+DH A+LP+FTEK     FKGR+F THPTKA+M++ML++ +R  ++ +
Sbjct:    5 RLAEEAADERHIMRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFD-GVEAEEIDLLLITHFHIDHVAALPHFTEKTN---FKGRVFMTHPTKAVMQMMLRDFLRVSNISV 123          
BLAST of EWM23111.1 vs. NCBI_GenBank
Match: gi|1214698942|gb|OWZ11848.1| (Cleavage and polyadenylation specificity factor protein [Phytophthora megakarya])

HSP 1 Score: 152.525 bits (384), Expect = 3.218e-39
Identity = 68/123 (55.28%), Postives = 95/123 (77.24%), Query Frame = 0
Query:   12 RLSSNEEDEDTVY-FTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAEEIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRL 133
            RL+    DE  +    PLGA  EVGRSC++L++KG+TIMLDCG+HPG +G  +LPFFD G +AEEID++LI+HFH+DH A+LP+FTEK     FKGR+F THPTKA+M++ML++ +R  ++ +
Sbjct:    5 RLAEEAADERHIMRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFD-GVEAEEIDLLLITHFHIDHVAALPHFTEKTN---FKGRVFMTHPTKAVMQMMLRDFLRVSNISV 123          
The following BLAST results are available for this feature:
BLAST of EWM23111.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103984|gb|EWM23111.1|4.114e-153100.00cleavage and polyadenylation specificity factor su... [more]
gi|553179772|ref|XP_005852759.1|3.250e-111100.00cleavage and polyadenylation specificity factor su... [more]
gi|397639513|gb|EJK73612.1|7.378e-4153.28hypothetical protein THAOC_04754 [Thalassiosira oc... [more]
gi|1183381115|gb|ORY06542.1|6.011e-4058.27Metallo-hydrolase/oxidoreductase [Neocallimastix c... [more]
gi|953503490|emb|CEG35500.1|7.412e-4056.10cleavage and polyadenylation specificity factor su... [more]
gi|223997482|ref|XP_002288414.1|1.491e-3952.55predicted protein, partial [Thalassiosira pseudona... [more]
gi|570316575|gb|ETO64523.1|1.537e-3955.28hypothetical protein F444_17968 [Phytophthora para... [more]
gi|301111988|ref|XP_002905073.1|2.742e-3955.28cleavage and polyadenylation specificity factor su... [more]
gi|568038404|gb|ETM35936.1|3.035e-3955.28hypothetical protein L914_17253 [Phytophthora para... [more]
gi|1214698942|gb|OWZ11848.1|3.218e-3955.28Cleavage and polyadenylation specificity factor pr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7575rna7575Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications