|
|
Properties
| Property Name | Value |
|---|
| Product | Protein phosphatase 2C, manganese/magnesium aspartate binding site |
| Orig transcript id | gnl|cribi|Naga_100229g5.2609.mrna |
| Orig protein id | gnl|cribi|Naga_100229g5.2609 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002472.1 | supercontig | CM002472.1:262638..265514 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of rna7567 >rna7567-protein ID=rna7567-protein|Name=rna7567|organism=Nannochloropsis gaditana|type=polypeptide|length=819bp
MASYMPTRQTISSLGQFAPKEDDRRRKQVATSAGSEDESSYVPSLPGVDA
CSIKCNPQVNIAQGEIGKTSEKVGKLEDEGELGALATESLALVRHKHRPF
KPLGSPPEEGNHETSHLRCTTCSLLPSGVPQPPCKGKSLSHLIPAPLSPS
SPTLSTTHGDSVTLQEPFLPADVPNPVPANTSTSKDPVSDVCGVLVEGHG
GLLSTDLEPTASLPGGAAHLPASGKRQTVVRIKDADTDSESSSTCSTCSG
SSASGPPSPSHAPSLASEGLSSLSTTTTVSAASTSSDVSPSGPARGRLEV
TKMFLPHESSELEMDEDRDVRPDPGAAAAAAARATAAKLLKIHRDLTPSP
PCAEHVRVHPLSLQELALVDESPAHLTSPRLSSPFTQGQVLSCRTGFGKA
GRGKAYRGPARQVKGPLVLYGEDVLAEAELVLPPGEDRGGEGRPQWVRVM
GVFDGHGLHGKEAARMAAEMFLRDMRRTTMQTLEALLAGDVGGVRRVEEE
RYRCLEEYLEKELQSPTGGTTGSTVQLLALTGKVFGVVSNVGDSPVLLVE
TRTGRVQVLTGRHAWDNPEERQRYLARCARMGVMPREVVYGRINCGGMRM
TDRNGTQEPLLMYKPGSSEVCTETRDWLCEQVEKRYRNSIGGSQSIRRMV
LERLKAGEEEGGEWEVFKALEGHGHMNWGATVLVNGEGKIQMTRSLGDRQ
EKRAAYIWAEPDVAVFEVGPGEDWTVVACSDGVGDMWYFHELGALATAFF
AKKDEAGGEGEREGEVQELAQLILEETIERGEVTPGYGVAPRVFSVVRGE
GLKRPLWDDLSVHCARIQT back to topmRNA from alignment at CM002472.1:262638..265514+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7567 ID=rna7567|Name=rna7567|organism=Nannochloropsis gaditana|type=mRNA|length=2877bp|location=Sequence derived from alignment at CM002472.1:262638..265514+ (Nannochloropsis gaditana)
TTTGGAGGGCTGGCACCTACCTTACAGTGTTCACGTCACCATTCACTTAC
ATACCTCAGCAGGTTCAGCTCGCATGACCCACATATCTAACCAATAAGTG
GCAGTCGTGGTATGGCGTCGTATATGCCTACGCGGCAGACTATTTCTTCC
CTTGGTCAATTTGCCCCCAAGGAGGACGACcgaaggagaaagcaggTGCG
TGGACGGAGCTCCAGTTGTTCCATATGACATGGTTTGGAACGTGAACGCA
TTTTAATCGAAAGCTTGTCAATTGCAAAGTCACGATATCTCTGCCTATGG
AAAGTGGGCCTGATAACTTTAACGACCGCCCACCTACTTtcgtttccctc
ttttttagGTCGCCACATCAGCTGGTTCAGAGGACGAATCTAGCTacgtt
ccctccttgcccggtGTCGACGCTTGCTCGATCAAGTGCAATCCTCAAGT
GAATATTGCACAAGGAGAGATTGGAAAAACATCCGAAAAGGTGGGAAAGC
tagaggacgaaggcgaaTTGGGCGCTCTGGCAACGGAGTCCCTTGCATTA
GTCCGGCATAAGCATCGGCCCTTCAAACCACTGGGGTCACCCCCAGAGGA
GGGCAATCACGAAACTAGTCATTTGAGGTGTACAACCTGCTCCTTGTTGC
CTTCTGGCGTGCCACAGCCCCCTTGTAAAGGCAAGAGTCTCAGTCATTTG
ATCCCggcgcccctctctccatcgtCGCCGACACTGTCAACGACGCACGG
CGACTCTGTTACACTGCAAGAACCTTTCCTGCCCGCGGACGTGCCGAATC
CTGTTCCAGCGAATACATCCACGTCGAAGGACCCTGTCAGTGACGTTTGT
GGCGTCTTGGTGGAAGGCCACGGAGGGCTGCTCTCGACAGACCTGGAacc
caccgcctccttgcctggAGGGGCGGCGCATTTACCCGCCTCAGGGAAGA
GACAAACTGTTGTTAGGATTAAGGACGCGGACACTGACTCggagagcagc
agcacctgcagcacctgcagcggcagcagcgcaAGTGGACCACCGAGTCC
GTCGCACGCACCTTCCCTCGCAAGTGAGGGTCTTAGCAGCCTGAGTACGA
CAACCACCGTTAGCGcagcctccacttcctcggACGTTTCCCCATCAGGA
CCTGCGCGTGGGAGGTTGGAGGTGACCAAGATGTTTTTGCCCCACGAGTC
GTCGGAACTTGAAATGGATGAAGACAGGGATGTACGGCCCGACCCCGGCG
CTgccgccgcagccgccgcccggGCAACCGCGGCCAAGTTGCTCAAAATC
CACCGCGACCTTACCCCATCTCCACCTTGCGCCGAGCATGTGCGGGTTCA
CCCGTTGAGCTTGCAGGAGCTTGCTTTGGTCGACGAGTCGCCGGCTCATC
TGACGTCGCCacgcctgtcctcccccttcacgCAGGGCCAGGTCCTTTCC
TGCCGCACGGGGTTTGGGAAGGCGGGCCGTGGAAAGGCCTACAGAGGTCC
GGCCCGGCAAGTGAAGGGTCCGCTGGTCTTGTACGGCGAGGAcgtgctgg
cggaggcggaacTCGTCTTGCCCCCCGGAGAagacaggggaggagagggc
cggcCGCAGTGGGTGAGGGTGATGGGTGTATTTGACGGGCATGGGCTGCA
TGGCAAGGAAGCAGCGCGGATGGCGGCGGAGATGTTCTTGCGCGACATGC
GGCGGACGACCATGCAGACCCTGGAGGCGCTCTTGGCGGGCGATGTGGGC
GGAGTccggcgggtggaggaggagcggtaCCGGTGCTTGGAAGAATACTT
GGAGAAAGAACTGCAAAGCCCAACAGGAGGCACGACCGGGTCGACAGTCC
AATTGCTTGCCTTGACCGGGAAGGTGTTTGGGGTGGTGAGCAATGTGGGG
GACTCGCCAGTCCTGCTGGTGGAGACCCGCACGGGAAGGGTGCAGGTCTT
GACGGGCCGGCACGCCTGGGACAACCCGGAGGAGCGGCAACGGTACTTGG
CACGGTGCGCGCGCATGGGGGTGATGCCCAGAGAGGTGGTGTACGGGCGG
ATCAATTGTGGGGGTATGCGGATGACGGATAGGAACGGGACGCAGGAGCC
CTTGCTCATGTACAAGCCTGGAAGCAGCGAGGTGTGTACGGAGACACGGG
ACTGGCTGTGCGAGCAGGTGGAGAAGCGATACCGGAATTCTATTGGAGGC
AGCCAGAGCATCCGAAGGATGGTGCTCGAGCGCTtaaaggcgggggagga
ggagggcggggagtgggaggtgTTCAAGGCGTTGGAGGGGCATGGACACA
TGAATTGGGGCGCAACAGTGCTTGtgaatggggaaggaaagattCAGATG
ACGCGTTCGCTCGGCGATCGACAGGAGAAAAGAGCGGCTTACATATGGGC
GGAGCCTGACGTGGCCGTCTTCGaggtggggccgggggaggattGGACGG
TGGTGGCATGCTCGGACGGGGTGGGGGACATGTGGTATTTCCACGAGTTG
GGTGCCCTGGCCACGGCCTTCTTTGCGAAGAaagacgaggcggggggaga
gggggagagggagggggaggtccaGGAGCTGGCGCAATTGatcttggagg
agacgatCGAGCGCGGGGAGGTGACGCCAGGATACGGTGTGGCGCCGCGA
GTCTTCAGCGTGgtgcgaggggaaggactgaAACGTCCCCTCTGGGACGA
TTTGAGCGTCCACTGTGCGCGCATTCAGACATAGACGCACATTTCCGGGG
GTGGTATCTAGTACCCTACCTCCCACTAAAAGTGCGATTTTGAGTGGGGA
AAGTAGGTTCATGTTGCTGTGGAGCATGTCGGGCTCTCTTAATTTGCGGG
ACAGATCTGTCTGGGACAGACGATGTc back to topCoding sequence (CDS) from alignment at CM002472.1:262638..265514+ >rna7567 ID=rna7567|Name=rna7567|organism=Nannochloropsis gaditana|type=CDS|length=4920bp|location=Sequence derived from alignment at CM002472.1:262638..265514+ (Nannochloropsis gaditana)
ATGGCGTCGTATATGCCTACGCGGCAGACTATTTCTTCCCTTGGTCAATT
TGCCCCCAAGGAGGACGACcgaaggagaaagcagGTCGCCACATCAGCTG
GTTCAGAGGACGAATCTAGCTacgttccctccttgcccggtGTCGACGCT
TGCTCGATCAAGTGCAATCCTCAAGTGAATATTGCACAAGGAGAGATTGG
AAAAACATCCGAAAAGGTGGGAAAGCtagaggacgaaggcgaaTTGGGCG
CTCTGGCAACGGAGTCCCTTGCATTAGTCCGGCATAAGCATCGGCCCTTC
AAACCACTGGGGTCACCCCCAGAGGAGGGCAATCACGAAACTAGTCATTT
GAGGTGTACAACCTGCTCCTTGTTGCCTTCTGGCGTGCCACAGCCCCCTT
GTAAAGGCAAGAGTCTCAGTCATTTGATCCCggcgcccctctctccatcg
tCGCCGACACTGTCAACGACGCACGGCGACTCTGTTACACTGCAAGAACC
TTTCCTGCCCGCGGACGTGCCGAATCCTGTTCCAGCGAATACATCCACGT
CGAAGGACCCTGTCAGTGACGTTTGTGGCGTCTTGGTGGAAGGCCACGGA
GGGCTGCTCTCGACAGACCTGGAacccaccgcctccttgcctggAGGGGC
GGCGCATTTACCCGCCTCAGGGAAGAGACAAACTGTTGTTAGGATTAAGG
ACGCGGACACTGACTCggagagcagcagcacctgcagcacctgcagcggc
agcagcgcaAGTGGACCACCGAGTCCGTCGCACGCACCTTCCCTCGCAAG
TGAGGGTCTTAGCAGCCTGAGTACGACAACCACCGTTAGCGcagcctcca
cttcctcggACGTTTCCCCATCAGGACCTGCGCGTGGGAGGTTGGAGGTG
ACCAAGATGTTTTTGCCCCACGAGTCGTCGGAACTTGAAATGGATGAAGA
CAGGGATGTACGGCCCGACCCCGGCGCTgccgccgcagccgccgcccggG
CAACCGCGGCCAAGTTGCTCAAAATCCACCGCGACCTTACCCCATCTCCA
CCTTGCGCCGAGCATGTGCGGGTTCACCCGTTGAGCTTGCAGGAGCTTGC
TTTGGTCGACGAGTCGCCGGCTCATCTGACGTCGCCacgcctgtcctccc
ccttcacgCAGGGCCAGGTCCTTTCCTGCCGCACGGGGTTTGGGAAGGCG
GGCCGTGGAAAGGCCTACAGAGGTCCGGCCCGGCAAGTGAAGGGTCCGCT
GGTCTTGTACGGCGAGGAcgtgctggcggaggcggaacTCGTCTTGCCCC
CCGGAGAagacaggggaggagagggccggcCGCAGTGGGTGAGGGTGATG
GGTGTATTTGACGGGCATGGGCTGCATGGCAAGGAAGCAGCGCGGATGGC
GGCGGAGATGTTCTTGCGCGACATGCGGCGGACGACCATGCAGACCCTGG
AGGCGCTCTTGGCGGGCGATGTGGGCGGAGTccggcgggtggaggaggag
cggtaCCGGTGCTTGGAAGAATACTTGGAGAAAGAACTGCAAAGCCCAAC
AGGAGGCACGACCGGGTCGACAGTCCAATTGCTTGCCTTGACCGGGAAGG
TGTTTGGGGTGGTGAGCAATGTGGGGGACTCGCCAGTCCTGCTGGTGGAG
ACCCGCACGGGAAGGGTGCAGGTCTTGACGGGCCGGCACGCCTGGGACAA
CCCGGAGGAGCGGCAACGGTACTTGGCACGGTGCGCGCGCATGGGGGTGA
TGCCCAGAGAGGTGGTGTACGGGCGGATCAATTGTGGGGGTATGCGGATG
ACGGATAGGAACGGGACGCAGGAGCCCTTGCTCATGTACAAGCCTGGAAG
CAGCGAGGTGTGTACGGAGACACGGGACTGGCTGTGCGAGCAGGTGGAGA
AGCGATACCGGAATTCTATTGGAGGCAGCCAGAGCATCCGAAGGATGGTG
CTCGAGCGCTtaaaggcgggggaggaggagggcggggagtgggaggtgTT
CAAGGCGTTGGAGGGGCATGGACACATGAATTGGGGCGCAACAGTGCTTG
tgaatggggaaggaaagattCAGATGACGCGTTCGCTCGGCGATCGACAG
GAGAAAAGAGCGGCTTACATATGGGCGGAGCCTGACGTGGCCGTCTTCGa
ggtggggccgggggaggattGGACGGTGGTGGCATGCTCGGACGGGGTGG
GGGACATGTGGTATTTCCACGAGTTGGGTGCCCTGGCCACGGCCTTCTTT
GCGAAGAaagacgaggcggggggagagggggagagggagggggaggtcca
GGAGCTGGCGCAATTGatcttggaggagacgatCGAGCGCGGGGAGGTGA
CGCCAGGATACGGTGTGGCGCCGCGAGTCTTCAGCGTGgtgcgaggggaa
ggactgaAACGTCCCCTCTGGGACGATTTGAGCGTCCACTGTGCGCGCAT
TCAGACATAGATGGCGTCGTATATGCCTACGCGGCAGACTATTTCTTCCC
TTGGTCAATTTGCCCCCAAGGAGGACGACcgaaggagaaagcagGTCGCC
ACATCAGCTGGTTCAGAGGACGAATCTAGCTacgttccctccttgcccgg
tGTCGACGCTTGCTCGATCAAGTGCAATCCTCAAGTGAATATTGCACAAG
GAGAGATTGGAAAAACATCCGAAAAGGTGGGAAAGCtagaggacgaaggc
gaaTTGGGCGCTCTGGCAACGGAGTCCCTTGCATTAGTCCGGCATAAGCA
TCGGCCCTTCAAACCACTGGGGTCACCCCCAGAGGAGGGCAATCACGAAA
CTAGTCATTTGAGGTGTACAACCTGCTCCTTGTTGCCTTCTGGCGTGCCA
CAGCCCCCTTGTAAAGGCAAGAGTCTCAGTCATTTGATCCCggcgcccct
ctctccatcgtCGCCGACACTGTCAACGACGCACGGCGACTCTGTTACAC
TGCAAGAACCTTTCCTGCCCGCGGACGTGCCGAATCCTGTTCCAGCGAAT
ACATCCACGTCGAAGGACCCTGTCAGTGACGTTTGTGGCGTCTTGGTGGA
AGGCCACGGAGGGCTGCTCTCGACAGACCTGGAacccaccgcctccttgc
ctggAGGGGCGGCGCATTTACCCGCCTCAGGGAAGAGACAAACTGTTGTT
AGGATTAAGGACGCGGACACTGACTCggagagcagcagcacctgcagcac
ctgcagcggcagcagcgcaAGTGGACCACCGAGTCCGTCGCACGCACCTT
CCCTCGCAAGTGAGGGTCTTAGCAGCCTGAGTACGACAACCACCGTTAGC
GcagcctccacttcctcggACGTTTCCCCATCAGGACCTGCGCGTGGGAG
GTTGGAGGTGACCAAGATGTTTTTGCCCCACGAGTCGTCGGAACTTGAAA
TGGATGAAGACAGGGATGTACGGCCCGACCCCGGCGCTgccgccgcagcc
gccgcccggGCAACCGCGGCCAAGTTGCTCAAAATCCACCGCGACCTTAC
CCCATCTCCACCTTGCGCCGAGCATGTGCGGGTTCACCCGTTGAGCTTGC
AGGAGCTTGCTTTGGTCGACGAGTCGCCGGCTCATCTGACGTCGCCacgc
ctgtcctcccccttcacgCAGGGCCAGGTCCTTTCCTGCCGCACGGGGTT
TGGGAAGGCGGGCCGTGGAAAGGCCTACAGAGGTCCGGCCCGGCAAGTGA
AGGGTCCGCTGGTCTTGTACGGCGAGGAcgtgctggcggaggcggaacTC
GTCTTGCCCCCCGGAGAagacaggggaggagagggccggcCGCAGTGGGT
GAGGGTGATGGGTGTATTTGACGGGCATGGGCTGCATGGCAAGGAAGCAG
CGCGGATGGCGGCGGAGATGTTCTTGCGCGACATGCGGCGGACGACCATG
CAGACCCTGGAGGCGCTCTTGGCGGGCGATGTGGGCGGAGTccggcgggt
ggaggaggagcggtaCCGGTGCTTGGAAGAATACTTGGAGAAAGAACTGC
AAAGCCCAACAGGAGGCACGACCGGGTCGACAGTCCAATTGCTTGCCTTG
ACCGGGAAGGTGTTTGGGGTGGTGAGCAATGTGGGGGACTCGCCAGTCCT
GCTGGTGGAGACCCGCACGGGAAGGGTGCAGGTCTTGACGGGCCGGCACG
CCTGGGACAACCCGGAGGAGCGGCAACGGTACTTGGCACGGTGCGCGCGC
ATGGGGGTGATGCCCAGAGAGGTGGTGTACGGGCGGATCAATTGTGGGGG
TATGCGGATGACGGATAGGAACGGGACGCAGGAGCCCTTGCTCATGTACA
AGCCTGGAAGCAGCGAGGTGTGTACGGAGACACGGGACTGGCTGTGCGAG
CAGGTGGAGAAGCGATACCGGAATTCTATTGGAGGCAGCCAGAGCATCCG
AAGGATGGTGCTCGAGCGCTtaaaggcgggggaggaggagggcggggagt
gggaggtgTTCAAGGCGTTGGAGGGGCATGGACACATGAATTGGGGCGCA
ACAGTGCTTGtgaatggggaaggaaagattCAGATGACGCGTTCGCTCGG
CGATCGACAGGAGAAAAGAGCGGCTTACATATGGGCGGAGCCTGACGTGG
CCGTCTTCGaggtggggccgggggaggattGGACGGTGGTGGCATGCTCG
GACGGGGTGGGGGACATGTGGTATTTCCACGAGTTGGGTGCCCTGGCCAC
GGCCTTCTTTGCGAAGAaagacgaggcggggggagagggggagagggagg
gggaggtccaGGAGCTGGCGCAATTGatcttggaggagacgatCGAGCGC
GGGGAGGTGACGCCAGGATACGGTGTGGCGCCGCGAGTCTTCAGCGTGgt
gcgaggggaaggactgaAACGTCCCCTCTGGGACGATTTGAGCGTCCACT
GTGCGCGCATTCAGACATAG back to top
|