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Properties
| Property Name | Value |
|---|
| Product | short-chain dehydrogenase reductase sdr |
| Orig transcript id | gnl|cribi|Naga_100229g6.2603.mrna |
| Orig protein id | gnl|cribi|Naga_100229g6.2603 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002472.1 | supercontig | CM002472.1:256850..258356 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7564 ID=rna7564|Name=rna7564|organism=Nannochloropsis gaditana|type=mRNA|length=4086bp
ATGAACGGTCGGGGTGGCGGACGTGGGGGCAGCAATAATGGTGGTAATCG
CAATTGGAAGGACCAACAGAAACGCGGTGGAAGTAATAATGGGGGCAATG
GTGCTGCCGGAGGACCGCAAAAACGTCCGAGAAACGGCACTGGAAACGAT
GGTGGGGACAACGACGATGATTTTGGAGAAGAGTTTCTTGAACTCGAAGA
TCAAATAGCCGCGGAGTTGGCTGCGGACCTTCCCCCGGAGGAGTACGAGC
AACTAAACGCCTCATCCACGGAGACCATCAACGAAGACACAAAGCTCAGT
TGGCGGCGCCCTTCCGTCCCACCGCTGGACGTGAAGAACGAGTCCTTAAC
ATTGCAGTGGCTCGATGTGGACATGACCGTGGGGAAGCGGTTGGAAAAAA
ATCCCGCAGGAGGACGTGTGCCAGGCGCCCCCTCTGGCCTTGTCCCGATC
CTGCGCTTCTATGGCGTCAGCCCCGTGGGGAACTCGGTGGCGGTTTTTGT
GCATGGCTTCACCCCGTATTTGTACGCCTCCTGTCCCGCCTCTTTCATGG
GCTCGGAGGCTTCCTTCCGCAAGGCGATGAACGACCGTTTGCTTGCAGAC
AGACAACGGGGAGGGAACCGAGGGGGCGGGGGCGCGGCGGGAACTGAGTC
AAATGATCTGTGCTTGGGCGCCAGCATCGAGACGGATAAACGGTCCATTC
TAGGATACGTCGCCGATCCCAACCAGACATTTTACAAAATATACGTGGCC
ACGCCTAATTTGGTGCCGACCGTGAAGCGGGTCTTGGAGGACGGCTTGGA
GGTGCCTGGCTTCGGCCGCTTGCACGGAGTCCTGACCTTCGAGAGCAACG
TCCCCTTCGTCTTGAGGTTCATGATCGACAAGGACATCACGGGCGCGGGC
TGGTTGGAGTGTCCGAAAGGCACATACCGTGTGCGGGGCGAGCGGGAGAA
GGAGAGCCATTGCCAGATCGAGGCCGACATCGTCTACGAGTCCCTGGAAG
GGCACCGACCGGAAGGACAGTGGAGCAAGCTGGCCCCGTTGCGGATCCTC
TCCACGGACATTGAGTGCCAGGGCCGGAAAGGGCACTTTCCAGAGGCGGA
GAAAGATCCGGTCATCCAGATCGCCAACTGCCTCACGGTCCAAGGGGAGC
GGGAGCCGATAGTCCAGAACGTCCTGACCCTCCGCGGCTGCCTCCCCATT
GTTGGCGCGCAGGTCCTCACTCACGAGAAGGAGGAGGACCTGTTGCTGAG
CTGGCGGGCATTTGTTCAGGAGGCGGACCCGGACATCCTAACGGGCTACA
ACATTGCCAACTTCGACCTGCCCTATCTGTTGCGACGCGCCGACACCTTA
GTCAAACGCGCGCCCAAACTTAAGGTGTTCAAGGAGCTGGGCCGACTCCG
CCGCACTCTAGCGACGATGAAGGACACGACCTTCCAGTCCTCTGCCTACG
GGAAGCGCGAGAACGTGGAGACGACCGTGCACGGGCGCGTGGTCTTCGAC
CTCCTCCCATACATGTTCCGGAACCACAAGCTCTCCTCCTACTCCCTGAA
CAGTGTCTCGGCCGAGTTCTTGGGCCAGCAGAAGGAGGACGTGCACCACT
CAATCATCTCGGACTTGCAGAACGGCACGGACGAGGACCGGCGGCGCTTG
GCCGTGTACTGTATCAAAGACGCGCTCTTACCCTGGAAATTGATGGAAAA
GCTCTCCGTCCTCGTCAATTACGTGGAGATGGCTCGTGTCACGGGCGTGC
CCATGGCCTTCCTCCTCACGCGCGGGCAGCAGATCAAGGTCTTCTCCATG
TTGCTCAGAAAGTGCCGCCAGTCCGCCCTGCTCATTCCCAACCTGCCGAA
GAACCGGCAAGACGAGGGCACCTACGAGGGCGCCACCGTCATCGAGCCCA
AGAAAGCCTTCTACCAGGACCCCATTGCCACCCTGGACTTCGCCTCTCTG
TACCCCTCCATCATGCAGGCCTTTAACCTCTGCTACTCCACCCTCCTCTC
CCGGGAGGAGAAACAGGCGCTTCCCCCTTCCTCCTACATCACCACGCCTT
CCCAAGAATCCTTCGTCAAGCCCAGCGTCCGCAAAGGCATCCTGCCCCTC
ATTCTCGACGAGCTCCTGGCGGCCCGGAAGCGCGCCAAGAGGGACATGGC
GGCGGCCACGGACCCGATGGAGAAGGCCGTCCAGAACGGGCGGCAGCTGG
CCCTCAAGATCTCCGCCAACAGCGTCTACGGCTTCACAGGGGCCACGGTC
GGGCAGCTCCCTTGCATCCCCATCGCCTCCTCCGTCACCTCCTACGGGAG
AGACTTGCTGTATCAGACCAAGGCCTTCGTGGAAGAGCACTACACGATCG
AGAAGGGCTGTTCGGCCAACGCCGAGGTCGTGTACGGAGACACGGACTCG
GTGATGGTCCGTTTCGGGGTCCCGACCGTGGAGGAGGCCATGCCCTTGGC
GGAGCGGGCGGCGGAGGAGGTGACCAAAATTTTCCCGCCCCCCATCAAGC
TCGAGTTCGAGAAGGTCTACTTCCCCTACCTGCTCATGAACAAGAAGCGG
TACGCCGGCCTCCTGTGGACCCGGCCCGACAAGTACGACAAGCTGGACAC
GAAGGGGCTCGAGACCGTCCGCCGCGACAACTGCCTCTTGGTCCGGCGGG
TCATCGACACTTGCCTGCGGAAGATCCTGATCGACCGGGATGTCCCCGGC
GCCATTGGCTACTGCAAGCACGTGATCGCCGAGCTCCTCCAGAACAAGAT
GGACATATCCCTCCTCGTCATCACCAAGGCTTTGGGCAAGTCTGCCGACG
AAAGCGGGTACGCGGCCAAGCAGGCCCATGTGGAGCTGGCGATGCGTATG
AAGAAGAGGGACCCCGGGACCGCGCCCAACGTGGGTGACCGGGTGGCCTA
CGTCATCATCCAGGCAGGGAAAGGAGCCCCTGCCTACGAGCGAAGCGAGG
ACCCGGTGTACGTGCTTGAGAACAGGATCCCGATTGACACGGACTATTAC
CTGCAGAATCAGCTCAGTAACCCCCTCACGCGGCTGTTCGAGCCCATCAT
CGACAACCCGGGTAGGCGGGGAGGAAGGGAAGGAGGGAGGAAAGGAGGGA
GGGAGAGACGTTGCAAGGAAGAGATTGGGGGCATAGGAGGCCTCGGACGT
GGCCTCTTCGCAAGCTTCGGTCGATCACGTGGCAAAGCCTGCCATGGGTG
GGTGGTCCCTCCGTGTCCTCTTCCTGTGCCTCCGCTCCCCTCTCGCTCCC
CCTCACTCCCCTCCCCTTCATCATCTCCCACAGAAAGCCTCCTTTCCGGA
GACCACACGCGTTCGATCGCCCGTCCGACCCCAACGGCCAAGGCGGGGGG
CATCATGATGTTTGCGGTCAAGAAGCTCAAATGCCTGGGCTGCAAGACTC
CCATTCCCGAGACGGAGAAGTCGACGCTTTGCGTGCACTGCGCGCCTCGG
GAGGCTGAGATCTACACGCAAAAAGCCTTGGAGGTGGCGGGCCATGAAGG
TGTGTTCGCCAAGTTGTGGACGCAGTGCCAGCGTTGCCAGGGCTCCTTCC
ACCAGGATATCTTGTGTTCCAACCGGGACTGCCCCATATTCTACAAGCGG
AAGAAGGTCCAGAAGGACCTGGCCGACGCCCAATACGCGCTCGACAGGTT
CGCGTTCTGACCCGGACGCTAAAAGCGGCATTCCGGCCGCTGGCTTGCAT
CGTGCGTCGAAACCTTGCGTCAATGCGTACGACTACGACTGCTTAAGGTT
GTTCGCAGAAGCGCATGTCGGGTGAAAGAAAAATCGGCCGGGACATCTAA
GAGCGTGGGAGGCAGCTTGTGGAGGAGCAGGGCGGAGGGTGGGTCCTATA
AACTCGATGCGAGGAAACCACTATAGATGGAAGGATAATAGTCATGAAAC
AGGAGTGCGAGCTTTTTATGTAGGCGATTCATTTATTAGAGTGAAATGGC
CTTGTTAGGGAGCTAGAAAAATTGTGCGAATGCACGAGTATCGGCGAACA
GCAAATTTTCCAAGAAAGTGGTAATTCTAATTGTATGTGTATCGTGATAA
CACTAATTTCAAAGAATATTTTCCATTTCAAGCGCT back to topprotein sequence of rna7564 >rna7564-protein ID=rna7564-protein|Name=rna7564|organism=Nannochloropsis gaditana|type=polypeptide|length=315bp
MKGGILAFALWGVIFALVPFAVEFLTRKSFPVHTTGAILVTGASTGIGNH
AAIHLATHYPDVTVYAGVRKDVDAENIKALHLSNLLPLHIDTTDQSSMDA
AVAFLHSTSLPIIGLINNAGVSTNSPIEFLPMAKLRQLLETNVVGPTYLT
QQLIPSLRASQGRVVQISSVLGKVTLATRGAYCASKHAFEALSDVLRLEL
SGPFGVSVSVVEPAYVRTEIFGKIQQEIETLLSPELRSLYGPFFYREDQA
ARKKAQIAKGDSPVVTSTAIEHALFADYPKTRYVVANFAGVRADLCLFIA
WMLPDRLADWLKGMM back to topmRNA from alignment at CM002472.1:256850..258356+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7564 ID=rna7564|Name=rna7564|organism=Nannochloropsis gaditana|type=mRNA|length=1507bp|location=Sequence derived from alignment at CM002472.1:256850..258356+ (Nannochloropsis gaditana)
CCTTTATTTGTAAGTCAAAATGGGAGAAGTTCAGTCATACTTGATGATAC
TAGCTCTATTTTGGACCGTCATCACTGAGGCGTATTTCGATTTAGGAGAT
CGTCAGTCTTGTTTTACATTacgcttcccttttttttctgTGAAAGGAAT
CTTGTGAGCCGATAATCTTTCGTGTCAGGCGCTCATAAATGCACACTTAA
CAACAGCATGCTCCTGAACAGAAACAAGAAGTTAAATGCTGTATGATATT
TATTTGAGACTGCGCCGTACGCCTTCGTAAAATCGTTATTTCACATCGTC
CCCCTGGTACAGTAAATGAAGGGCGGTATTCTTGCATTCGCCTTGTGGGG
CGTCATCTTTGCCCTGGTGCCCTTCGCCGTGGAATTTTTGACGCGAAAAA
GTTTTCCTGTGCATACTACCGGCGCCATCCTCGTGACAGGTACGCGGAAA
CCGGTTTGAAAAGACGAATGCATGAAAAAGATCCATGCGGTCCTCGGTTT
CTGATGTCTCATCATCTCTGTTCCCCCAGGCGCGTCTACTGGCATTGGCA
ATCACGCCGCCATACATCTTGCCACGCACTATCCTGATGTCACAGTGTAC
GCGGGCGTTCGAAAAGACGTCGATGCAGAGAATATTAAGGCGCTCCATct
ttccaacctcctccccctccatatCGACACCACGGATCAAAGCTCCATGG
ACGCAGccgtcgctttcctccactccacctccctcccgatcATCGGCCTC
ATCAATAACGCAGGCGTGAGTACCAACTCTCCCATTGAATTCCTTCCCAT
GGCCAAGCTCCGGCAGCTGTTGGAAACCAACGTGGTCGGCCCCACTTATC
TGACGCAGCAgctcattccctccctccgcgcttcGCAAGGACGCGTGGTA
CAAATTTCATCCGTGCTGGGTAAAGTCACGTTGGCCACGAGAGGGGCATA
CTGTGCGTCCAAGCATGCCTTCGAGGCCCTCTCGGATGTGCTCCGCTTGG
AACTCTCCGGCCCCTTCGGCGTCTCCGTCTCGGTGGTGGAACCCGCCTAC
GTCCGCACGGAGATCTTCGGGAAGATCCAGCAGGAGATTGagaccctcct
ctccccggaGCTCCGGAGCTTGTACGGGCCATTTTTCTAccgggaggacc
aggccgcgaggaaaaaggcgcaGATTGCCAAGGGCGATAGCCCCGTGGTC
ACGAGCACGGCCATTGAgcacgccctcttcgccgACTACCCCAAGACGCG
CTATGTGGTCGCCAATTTTGCTGGCGTGAGGGCCGACCTTTGCCTATTCA
TCGCCTGGATGCTGCCGGACAGGCTGGCAGACTGGTTGAAAGGCATGATg
tgaggggggcgagaggacgggagcaaggggggggaaagagggagccgTGC
CATGGAAAGGTGTGGCGAAAAGAACTAGTCATTGCCCCACGAAGGTGGAC
AGAAGCATTTCTAACATTGTTTTATACAAGCTCGTGGCCGTGCAGAGTTT
TACCACC back to topCoding sequence (CDS) from alignment at CM002472.1:256850..258356+ >rna7564 ID=rna7564|Name=rna7564|organism=Nannochloropsis gaditana|type=CDS|length=1896bp|location=Sequence derived from alignment at CM002472.1:256850..258356+ (Nannochloropsis gaditana)
ATGAAGGGCGGTATTCTTGCATTCGCCTTGTGGGGCGTCATCTTTGCCCT
GGTGCCCTTCGCCGTGGAATTTTTGACGCGAAAAAGTTTTCCTGTGCATA
CTACCGGCGCCATCCTCGTGACAGGCGCGTCTACTGGCATTGGCAATCAC
GCCGCCATACATCTTGCCACGCACTATCCTGATGTCACAGTGTACGCGGG
CGTTCGAAAAGACGTCGATGCAGAGAATATTAAGGCGCTCCATctttcca
acctcctccccctccatatCGACACCACGGATCAAAGCTCCATGGACGCA
GccgtcgctttcctccactccacctccctcccgatcATCGGCCTCATCAA
TAACGCAGGCGTGAGTACCAACTCTCCCATTGAATTCCTTCCCATGGCCA
AGCTCCGGCAGCTGTTGGAAACCAACGTGGTCGGCCCCACTTATCTGACG
CAGCAgctcattccctccctccgcgcttcGCAAGGACGCGTGGTACAAAT
TTCATCCGTGCTGGGTAAAGTCACGTTGGCCACGAGAGGGGCATACTGTG
CGTCCAAGCATGCCTTCGAGGCCCTCTCGGATGTGCTCCGCTTGGAACTC
TCCGGCCCCTTCGGCGTCTCCGTCTCGGTGGTGGAACCCGCCTACGTCCG
CACGGAGATCTTCGGGAAGATCCAGCAGGAGATTGagaccctcctctccc
cggaGCTCCGGAGCTTGTACGGGCCATTTTTCTAccgggaggaccaggcc
gcgaggaaaaaggcgcaGATTGCCAAGGGCGATAGCCCCGTGGTCACGAG
CACGGCCATTGAgcacgccctcttcgccgACTACCCCAAGACGCGCTATG
TGGTCGCCAATTTTGCTGGCGTGAGGGCCGACCTTTGCCTATTCATCGCC
TGGATGCTGCCGGACAGGCTGGCAGACTGGTTGAAAGGCATGATgtgaAT
GAAGGGCGGTATTCTTGCATTCGCCTTGTGGGGCGTCATCTTTGCCCTGG
TGCCCTTCGCCGTGGAATTTTTGACGCGAAAAAGTTTTCCTGTGCATACT
ACCGGCGCCATCCTCGTGACAGGCGCGTCTACTGGCATTGGCAATCACGC
CGCCATACATCTTGCCACGCACTATCCTGATGTCACAGTGTACGCGGGCG
TTCGAAAAGACGTCGATGCAGAGAATATTAAGGCGCTCCATctttccaac
ctcctccccctccatatCGACACCACGGATCAAAGCTCCATGGACGCAGc
cgtcgctttcctccactccacctccctcccgatcATCGGCCTCATCAATA
ACGCAGGCGTGAGTACCAACTCTCCCATTGAATTCCTTCCCATGGCCAAG
CTCCGGCAGCTGTTGGAAACCAACGTGGTCGGCCCCACTTATCTGACGCA
GCAgctcattccctccctccgcgcttcGCAAGGACGCGTGGTACAAATTT
CATCCGTGCTGGGTAAAGTCACGTTGGCCACGAGAGGGGCATACTGTGCG
TCCAAGCATGCCTTCGAGGCCCTCTCGGATGTGCTCCGCTTGGAACTCTC
CGGCCCCTTCGGCGTCTCCGTCTCGGTGGTGGAACCCGCCTACGTCCGCA
CGGAGATCTTCGGGAAGATCCAGCAGGAGATTGagaccctcctctccccg
gaGCTCCGGAGCTTGTACGGGCCATTTTTCTAccgggaggaccaggccgc
gaggaaaaaggcgcaGATTGCCAAGGGCGATAGCCCCGTGGTCACGAGCA
CGGCCATTGAgcacgccctcttcgccgACTACCCCAAGACGCGCTATGTG
GTCGCCAATTTTGCTGGCGTGAGGGCCGACCTTTGCCTATTCATCGCCTG
GATGCTGCCGGACAGGCTGGCAGACTGGTTGAAAGGCATGATgtga back to top
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