rna7561, rna7561 (mRNA) Nannochloropsis gaditana

Overview
Namerna7561
Unique Namerna7561
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1383
Alignment locationCM002472.1:248613..249915 +

Link to JBrowse

Properties
Property NameValue
Productribosome biogenesis protein rlp24
Orig transcript idgnl|cribi|Naga_100229g8.2602.mrna
Orig protein idgnl|cribi|Naga_100229g8.2602
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:248613..249915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100229g8gene7319Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7561rna7561-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23125.1cds7543Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7561 ID=rna7561|Name=rna7561|organism=Nannochloropsis gaditana|type=mRNA|length=1383bp
TTGGAGGTGTCGTGCGGTGCCCACGTGTTGTGTTGACCCGGACACGATGG
CAAATAATGTAGTGTGTGATGCCGAAGAGTGGGTGGCTGCGGCAGCGGAG
GTGACCACCGCAGGCGCGGTCGTGTCCAGCCCTTCCCTTTGCTTCTTTCT
TTCTCTCCACCAGGCTTTGATGGGGGGGTGGTAGCTGTAAATGCACCTCC
ACGGTGAACTACGTTGGTGATCACCCCGTGCGGACACACCACAGTGTATG
TTTTACAAGCCCACATGCGAGTGGTTTGTGGTGAAAAGCATGTCCATGGA
CCACGGTGTCTTGTGGGGAAGGAGAAATCAAGCGTTCGGCCAGGGCACCA
TGCATCCTCCCACCTTGCTAAGCTTTCCTACCACACGCACGACAATCACA
GGGTCAAGTATGCCTTCCATTGCTTTTCGTCGGAATTACCGGAAGACGGA
CAAGACTCCGCGTCGCCCCTTCGAGAAAGAGCGCCTCGACCAAGAACTGA
AGCTGTGCGGCGAGTACGGTCTTCGGTGCAAGGCAGAGATTTGGCGTGTG
CAATTTGCGCTGGCTAAGATCCGTAAAGCAGCCCGTGAGCTGTTGACCTT
GGACGAGAAGGACCCGCGCCGAGTCTTCGAGGGCCCGGCACTCCTGCGAC
GCTGCGTCCGCGCCGGTCTCCTCGAGCAGGATAAGGCGGAGTTGGATTTC
GTCTTACAATTGACGACACAAAAGCTGTTGGAGCGACGTTTGCAGACCAA
GGTCTTCAAGCAGTCTTTGGCCAAGTCCATCCACCATGCCCGTGTCCTGA
TCCGACAGCGCCACATCCGGGTCGGGAAGCAGCTCGTCAACATTCCCTCC
TTCTTGGTGCGCGTGGACTCGGAGAAGCACATCGATTTCTCCACCACGTC
CCCCTACGGACAGGGCAGGAAAGGTCGCGTGGCCCGTCGCCGGGAGGCTC
AAAGGGCGGCCGCGGCGGGAGGAGGAGGAGCAGACGACGACGCAGGGGAG
GAGTCGGAGTAAGGCGGGATGGGAGGGAGGGAACGGCGTGTGCTCGTGAT
GGTGGTTGCGGTCAGGATGGTTCTAGACGCGCGGGCTAGACAGAGGGCAA
TGGGCCAGTGGAGTGATGTCTGGAACCCGTGCTGTGCAGCGTGCCTGTGT
GCATGCGCAAGCTGAAGGGGGGGTCGGTGGGAAGGGAAGGTGGCCACCCT
GGACGCAGCGATGGTCACGAGAAGGAGCGACGGGAGGAAAAGGGAACGGA
AGAGACATTCATTGACACGGCCTCAAAAGGTCTGTCGGACAAGGGCTTAC
GCCGGGTGCCACGGACCGGGCGTGGTTTCTTCGTTCCATTACTTGTTCCT
GCCCTGCTGCCTGCTCGTTGTTTCAACCGCCCC
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protein sequence of rna7561

>rna7561-protein ID=rna7561-protein|Name=rna7561|organism=Nannochloropsis gaditana|type=polypeptide|length=263bp
MDTGQCQGWFVARCSGLLFCGRHGRGHNVPATRSSTTYSSTRRKTRSIPP
ADIPHNPLFPLPFLDHHRHAPNDTPAMRILKCYFCSGPMYPGHGTTFVRN
DAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKR
RNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQ
VEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRG
GSGEGEGGGMDVS
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mRNA from alignment at CM002472.1:248613..249915+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7561 ID=rna7561|Name=rna7561|organism=Nannochloropsis gaditana|type=mRNA|length=1303bp|location=Sequence derived from alignment at CM002472.1:248613..249915+ (Nannochloropsis gaditana)
AGGATGACCACACGCACATGACCAAATGgccaccggggggggggagatcT
CCCATACACCCCGTGGCCACGGCCACCAGTCTTTTTGTAAGGCAGAAAGA
TGGATACCGGGCAATGTCAGGGATGGTTTGTCGCTAGGTGCAGCGGGTTA
TTATTTTGTGGCAGACATGGCCGTGGGCATAATGTGCCAGCCACTCGCTC
CTCGACGACGTACTCCTCTACACGACGAAAAACCAGGAGTATCCCGCCTG
CCGATATCCCTCACaaccccctttttcctctcccgttCCTTGACCATCAC
CGTCATGCGCCTAACGATACACCAGCTATGCGGATATTAAAGTGCTATTT
TTGCTCGGGCCCCATGTATCCGGGGCATGGAACCACCTTTGTCAGGAATG
ATGCCAAGGTACGTCTGGAGGGCCTGGGTCGCACCCTGCTCCCTCGTCTG
TTTGGCCTATCATTTCCACTGGCGGGGTGGATCATATACTGTCTCAATAC
AGACGGAGTATGAGTTGCTTGCTAAACAAAGCAGAGCAAAGTGAGCCTGT
TTCATTCTCCTCATGTGTACCTCTCCACCTacgtccgtccctccctggcc
cttaGGTTTTCAATTTTTGCCGCTCAAAATGCCACCGAAATTTCAACAAG
AAACGCAATCCCCGCAAGACCCGATGGACGAAGGCATATCGGAaagcagc
agggaaggaaatggtggTGGACGCGACCTTTGACTTTGAGAAGCGGCGAA
ATCGCCCCGTGAAATACGACCGAGACCTTGTTGGAAAGACTGTCCAAGCC
ATGCAGAAGATACGCACCATCCAATCTCGGCGCGAAGAAGTTTTCTACCA
GACACGTATGCGTGAGGCaaagatgaaggagaaggccgcATTGCAAGTGG
AAGTGAAGGAGAATGTGGAGTTGTTGGCGCCGGCTGCGGCGTCCCGGGAG
AAAGCGCTGCTCAATGTGCGGGAGAAGGTCAAAGAGCGCCAGGCTGTGCG
AGCCGCGacgaaggcaggaggaaaagggaagggtggacagaggggaggga
gtggggaaggggaggggggtggaatGGATGTAAGttaagaaaggaagagg
agggcataCGATGCGGTTGGAGGGTAGAATCTGGAGTTTCTGCGGGTGGT
GATTTTCTGGACCTTTGTAAATAGCAGGTACGATGAGTGCCAGGTGGTAA
ACGGGTGTAGGGACCGAAACGTCCTCTTCGAAGTGCGCTTCCTCGCGTCA
TCAGGACACGAGAAATTGTCccaaaagaaaagaagaaaggacagaAGAAA
ACA
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Coding sequence (CDS) from alignment at CM002472.1:248613..249915+

>rna7561 ID=rna7561|Name=rna7561|organism=Nannochloropsis gaditana|type=CDS|length=1584bp|location=Sequence derived from alignment at CM002472.1:248613..249915+ (Nannochloropsis gaditana)
ATGGATACCGGGCAATGTCAGGGATGGTTTGTCGCTAGGTGCAGCGGGTT
ATTATTTTGTGGCAGACATGGCCGTGGGCATAATGTGCCAGCCACTCGCT
CCTCGACGACGTACTCCTCTACACGACGAAAAACCAGGAGTATCCCGCCT
GCCGATATCCCTCACaaccccctttttcctctcccgttCCTTGACCATCA
CCGTCATGCGCCTAACGATACACCAGCTATGCGGATATTAAAGTGCTATT
TTTGCTCGGGCCCCATGTATCCGGGGCATGGAACCACCTTTGTCAGGAAT
GATGCCAAGGTTTTCAATTTTTGCCGCTCAAAATGCCACCGAAATTTCAA
CAAGAAACGCAATCCCCGCAAGACCCGATGGACGAAGGCATATCGGAaag
cagcagggaaggaaatggtggTGGACGCGACCTTTGACTTTGAGAAGCGG
CGAAATCGCCCCGTGAAATACGACCGAGACCTTGTTGGAAAGACTGTCCA
AGCCATGCAGAAGATACGCACCATCCAATCTCGGCGCGAAGAAGTTTTCT
ACCAGACACGTATGCGTGAGGCaaagatgaaggagaaggccgcATTGCAA
GTGGAAGTGAAGGAGAATGTGGAGTTGTTGGCGCCGGCTGCGGCGTCCCG
GGAGAAAGCGCTGCTCAATGTGCGGGAGAAGGTCAAAGAGCGCCAGGCTG
TGCGAGCCGCGacgaaggcaggaggaaaagggaagggtggacagagggga
gggagtggggaaggggaggggggtggaatGGATGTAAGttaaATGGATAC
CGGGCAATGTCAGGGATGGTTTGTCGCTAGGTGCAGCGGGTTATTATTTT
GTGGCAGACATGGCCGTGGGCATAATGTGCCAGCCACTCGCTCCTCGACG
ACGTACTCCTCTACACGACGAAAAACCAGGAGTATCCCGCCTGCCGATAT
CCCTCACaaccccctttttcctctcccgttCCTTGACCATCACCGTCATG
CGCCTAACGATACACCAGCTATGCGGATATTAAAGTGCTATTTTTGCTCG
GGCCCCATGTATCCGGGGCATGGAACCACCTTTGTCAGGAATGATGCCAA
GGTTTTCAATTTTTGCCGCTCAAAATGCCACCGAAATTTCAACAAGAAAC
GCAATCCCCGCAAGACCCGATGGACGAAGGCATATCGGAaagcagcaggg
aaggaaatggtggTGGACGCGACCTTTGACTTTGAGAAGCGGCGAAATCG
CCCCGTGAAATACGACCGAGACCTTGTTGGAAAGACTGTCCAAGCCATGC
AGAAGATACGCACCATCCAATCTCGGCGCGAAGAAGTTTTCTACCAGACA
CGTATGCGTGAGGCaaagatgaaggagaaggccgcATTGCAAGTGGAAGT
GAAGGAGAATGTGGAGTTGTTGGCGCCGGCTGCGGCGTCCCGGGAGAAAG
CGCTGCTCAATGTGCGGGAGAAGGTCAAAGAGCGCCAGGCTGTGCGAGCC
GCGacgaaggcaggaggaaaagggaagggtggacagaggggagggagtgg
ggaaggggaggggggtggaatGGATGTAAGttaa
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Synonyms
Publications