EWM23125.1, cds7543 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|585104003|gb|EWM23125.1| (ribosome biogenesis protein rlp24 [Nannochloropsis gaditana]) HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
Query: 1 MDTGQCQGWFVARCSGLLFCGRHGRGHNVPATRSSTTYSSTRRKTRSIPPADIPHNPLFPLPFLDHHRHAPNDTPAMRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMDVS 263
MDTGQCQGWFVARCSGLLFCGRHGRGHNVPATRSSTTYSSTRRKTRSIPPADIPHNPLFPLPFLDHHRHAPNDTPAMRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMDVS
Sbjct: 1 MDTGQCQGWFVARCSGLLFCGRHGRGHNVPATRSSTTYSSTRRKTRSIPPADIPHNPLFPLPFLDHHRHAPNDTPAMRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMDVS 263
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|553178829|ref|XP_005852610.1| (ribosome biogenesis protein rlp24 [Nannochloropsis gaditana CCMP526] >gi|422295923|gb|EKU23222.1| ribosome biogenesis protein rlp24 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 291.967 bits (746), Expect = 8.626e-98 Identity = 152/187 (81.28%), Postives = 152/187 (81.28%), Query Frame = 0
Query: 77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMDVS 263
MRILKCYFCSGPMYPGHGTTFVRNDAK MVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMDVS
Sbjct: 1 MRILKCYFCSGPMYPGHGTTFVRNDAK-----------------------------------MVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMDVS 152
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|1072232779|gb|OEU17510.1| (60S ribosomal protein L24 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 227.254 bits (578), Expect = 8.571e-72 Identity = 110/185 (59.46%), Postives = 136/185 (73.51%), Query Frame = 0
Query: 77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMD 261
MRI KCYFCS P YPGHG TFVRND+K F FCRSKCHRNFNKKRNPRK WTKAYRK GKEM VD+TFDFEKRRNRPVKYDRDL+GKT+ AM+++ TI+ REE F++ RM +AK ++K +VE+++++ELLAPA A+RE+ + NV + K R A R K+ G + G GM+
Sbjct: 1 MRIEKCYFCSSPCYPGHGMTFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMKRVETIKKAREERFFENRMSDAKAEKKKQARVEIEKSIELLAPAVANREQVMRNVIDSAKLRIAAR--KKSSGTRLTNTPSAAAAVGGDGME 183
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|223999709|ref|XP_002289527.1| (RL30, ribosomal protein 30 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|220974735|gb|EED93064.1| RL30, ribosomal protein 30 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 224.942 bits (572), Expect = 4.250e-71 Identity = 112/180 (62.22%), Postives = 136/180 (75.56%), Query Frame = 0
Query: 77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGE 256
MRI KCYFCS P YPGHG FVRND+K F FCRSKCHRNFNKKRNPRK WTKAYRK GKE+ VD+TF+FEKRRNRPVKYDR+L+GKT+ AMQ++++I+ RREE F+ RMR+AK ++ +VE++++VELLAPA A RE+ L NV + + R A R KAG K GSGE E
Sbjct: 1 MRIEKCYFCSSPCYPGHGIMFVRNDSKTFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKELAVDSTFEFEKRRNRPVKYDRNLMGKTIMAMQRVQSIKERREERFHANRMRDAKPEKVKQARVEIEKHVELLAPAVAKREEVLQNVLDSARARIATR-KIKAGENVKA---RGSGEIE 176
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|397641567|gb|EJK74723.1| (hypothetical protein THAOC_03583 [Thalassiosira oceanica]) HSP 1 Score: 221.09 bits (562), Expect = 1.523e-69 Identity = 101/180 (56.11%), Postives = 133/180 (73.89%), Query Frame = 0
Query: 77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGE 256
MRI KCYFCS P YPGHG FVRND+K F FCRSKCHRNFNKKRNPRK WTKAYR+ GKE+ VD+ F+FEKRRNRPVKYDR+L+GKT+ AMQ++++I+ RREE F+ RM++AK ++ + +VE+++++E++APA A+RE+ L NV + +ER A R K + G E
Sbjct: 1 MRIEKCYFCSSPCYPGHGIVFVRNDSKSFRFCRSKCHRNFNKKRNPRKVAWTKAYRRTRGKELAVDSAFEFEKRRNRPVKYDRNLMGKTIMAMQRVQSIKERREERFHANRMQDAKAEKISQARVEIEKHIEVIAPAVANREEVLANVLDSARERIATRRVVKEKAIARDATAGDEKMEE 180
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|1173958885|gb|OQS05182.1| (ribosome biogenesis protein RLP24 [Thraustotheca clavata]) HSP 1 Score: 207.223 bits (526), Expect = 3.444e-64 Identity = 97/166 (58.43%), Postives = 122/166 (73.49%), Query Frame = 0
Query: 77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAP-AAASREKALLNVREKVKERQAVRAATKAG 241
MRI CYFCS P+YPGHG FVRND+KVF FCRSKCHRNFN+KRNPRK +WTKA+RKAAGKEM +D TFDFEK RNR VKYDRDLVG T+ AM +++ I+ +RE FY+ RM++ K K+K E+++N+ L+ P A++E+A LN + ERQ T G
Sbjct: 1 MRIYTCYFCSSPVYPGHGMAFVRNDSKVFRFCRSKCHRNFNRKRNPRKVKWTKAFRKAAGKEMALDTTFDFEKIRNRAVKYDRDLVGATLHAMARVQQIKEKREAAFYKNRMKDVKAKQKVRDLAEIQQNISLVKPDVVAAKEQAQLNAHD--MERQTNVVGTDEG 164
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|301092712|ref|XP_002997209.1| (ribosome biogenesis protein RLP24 [Phytophthora infestans T30-4] >gi|301126859|ref|XP_002909877.1| ribosome biogenesis protein RLP24 [Phytophthora infestans T30-4] >gi|262101245|gb|EEY59297.1| ribosome biogenesis protein RLP24 [Phytophthora infestans T30-4] >gi|262111519|gb|EEY69571.1| ribosome biogenesis protein RLP24 [Phytophthora infestans T30-4]) HSP 1 Score: 206.068 bits (523), Expect = 9.384e-64 Identity = 90/149 (60.40%), Postives = 123/149 (82.55%), Query Frame = 0
Query: 77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAAS-REKALLNV 224
MRI CYFCS P+YPGHG TFVRND+K+F FCRSKCH+NFN+KRNPRK +WTKA+RKAAGKEM +D TFDF+K+R+R VKYDR+L+G T+ A++++ I+ +RE FY+ RM+++K K KA E+++N+ L+ PAAA+ +++ALLNV
Sbjct: 1 MRIHTCYFCSSPVYPGHGITFVRNDSKIFRFCRSKCHKNFNRKRNPRKVKWTKAFRKAAGKEMALDTTFDFDKQRHRAVKYDRELMGATIHAIERVTQIKEKREAAFYKNRMKDSKAKAKARDLRELEQNITLIEPAAAALKDQALLNV 149
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|1214708255|gb|OWZ19558.1| (Ribosome biogenesis protein RLP24 [Phytophthora megakarya]) HSP 1 Score: 205.682 bits (522), Expect = 1.672e-63 Identity = 90/149 (60.40%), Postives = 124/149 (83.22%), Query Frame = 0
Query: 77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAAS-REKALLNV 224
MRI CYFCS P+YPGHG TFVRND+K+F FCRSKCH+NFN+KRNPRK +WTKA+RKAAGKEM +D TFDF+K+R+R VKYDR+L+G T+ A++++ I+ +RE FY+ RM+++K+KEKA E+++N+ L+ PAAA+ +++A LNV
Sbjct: 1 MRIHTCYFCSSPVYPGHGITFVRNDSKIFRFCRSKCHKNFNRKRNPRKVKWTKAFRKAAGKEMALDTTFDFDKQRHRAVKYDRELMGATIHAIERVTQIKEKREAQFYKNRMKDSKVKEKARDLRELEQNITLIEPAAAALKDQAQLNV 149
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|669165838|ref|XP_008618481.1| (50S ribosomal protein L24e [Saprolegnia diclina VS20] >gi|813176495|ref|XP_012205037.1| hypothetical protein SPRG_09902 [Saprolegnia parasitica CBS 223.65] >gi|530729814|gb|EQC28056.1| 50S ribosomal protein L24e [Saprolegnia diclina VS20] >gi|641530124|gb|KDO24266.1| hypothetical protein SPRG_09902 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 205.297 bits (521), Expect = 2.344e-63 Identity = 94/159 (59.12%), Postives = 121/159 (76.10%), Query Frame = 0
Query: 77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKALLNVREKVKERQAV 234
MRI CYFCS P+YPGHG FVRND+KVF FCRSKCHRNFN+KRNPRK +WTKA+RKAAGKEM +D TFDFEK RNR VKYDRDLVG T+ AM +++ I+ +RE FY+ RM+++K K+KA E+++N+ L+ P ++E+A LN + + AV
Sbjct: 1 MRIHTCYFCSSPVYPGHGMAFVRNDSKVFRFCRSKCHRNFNRKRNPRKVKWTKAFRKAAGKEMALDTTFDFEKIRNRAVKYDRDLVGATLHAMARVQQIKEKREAAFYKNRMKDSKAKQKARDVAEIEQNISLIKPEIVFAKERAQLNAADNERVTNAV 159
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|1173945249|gb|OQR93902.1| (ribosome biogenesis protein RLP24 [Achlya hypogyna]) HSP 1 Score: 204.142 bits (518), Expect = 6.670e-63 Identity = 92/151 (60.93%), Postives = 118/151 (78.15%), Query Frame = 0
Query: 77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKALLNVRE 226
MRI CYFCS P+YPGHG FVRND+KVF FCRSKCHRNFN+KRNPRK +WTKA+RKAAGKEM +D TFDFEK RNR VKYDRDLVG T+ AM +++ I+ +RE FY+ RM+++K K+KA E+++N+ L+ P ++E+A LN +
Sbjct: 1 MRIHTCYFCSSPVYPGHGMAFVRNDSKVFRFCRSKCHRNFNRKRNPRKVKWTKAFRKAAGKEMALDTTFDFEKIRNRAVKYDRDLVGATLHAMARVQQIKEKREAAFYKNRMKDSKAKQKARDIAELEQNISLIKPDIVFAKERAQLNAED 151 The following BLAST results are available for this feature:
BLAST of EWM23125.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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