EWM23125.1, cds7543 (CDS) Nannochloropsis gaditana

Overview
NameEWM23125.1
Unique Namecds7543
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:248712..249020 +
Alignment locationCM002472.1:249218..249700 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23125.1
Productribosome biogenesis protein rlp24
Orig transcript idgnl|cribi|Naga_100229g8.2602.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:248712..249020 +
CM002472.1supercontigCM002472.1:249218..249700 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0016043cellular component organization
GO:0042254ribosome biogenesis
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005829cytosol
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR024546Ribosome_biogen_RLP24
IPR000988Ribosomal_L24e-rel
IPR023441Ribosomal_L24e_dom
IPR011017TRASH_dom
Homology
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|585104003|gb|EWM23125.1| (ribosome biogenesis protein rlp24 [Nannochloropsis gaditana])

HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
Query:    1 MDTGQCQGWFVARCSGLLFCGRHGRGHNVPATRSSTTYSSTRRKTRSIPPADIPHNPLFPLPFLDHHRHAPNDTPAMRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMDVS 263
            MDTGQCQGWFVARCSGLLFCGRHGRGHNVPATRSSTTYSSTRRKTRSIPPADIPHNPLFPLPFLDHHRHAPNDTPAMRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMDVS
Sbjct:    1 MDTGQCQGWFVARCSGLLFCGRHGRGHNVPATRSSTTYSSTRRKTRSIPPADIPHNPLFPLPFLDHHRHAPNDTPAMRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMDVS 263          
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|553178829|ref|XP_005852610.1| (ribosome biogenesis protein rlp24 [Nannochloropsis gaditana CCMP526] >gi|422295923|gb|EKU23222.1| ribosome biogenesis protein rlp24 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 291.967 bits (746), Expect = 8.626e-98
Identity = 152/187 (81.28%), Postives = 152/187 (81.28%), Query Frame = 0
Query:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMDVS 263
            MRILKCYFCSGPMYPGHGTTFVRNDAK                                   MVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMDVS
Sbjct:    1 MRILKCYFCSGPMYPGHGTTFVRNDAK-----------------------------------MVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMDVS 152          
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|1072232779|gb|OEU17510.1| (60S ribosomal protein L24 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 227.254 bits (578), Expect = 8.571e-72
Identity = 110/185 (59.46%), Postives = 136/185 (73.51%), Query Frame = 0
Query:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGEGGGMD 261
            MRI KCYFCS P YPGHG TFVRND+K F FCRSKCHRNFNKKRNPRK  WTKAYRK  GKEM VD+TFDFEKRRNRPVKYDRDL+GKT+ AM+++ TI+  REE F++ RM +AK ++K   +VE+++++ELLAPA A+RE+ + NV +  K R A R   K+ G         +    G GM+
Sbjct:    1 MRIEKCYFCSSPCYPGHGMTFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMKRVETIKKAREERFFENRMSDAKAEKKKQARVEIEKSIELLAPAVANREQVMRNVIDSAKLRIAAR--KKSSGTRLTNTPSAAAAVGGDGME 183          
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|223999709|ref|XP_002289527.1| (RL30, ribosomal protein 30 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|220974735|gb|EED93064.1| RL30, ribosomal protein 30 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 224.942 bits (572), Expect = 4.250e-71
Identity = 112/180 (62.22%), Postives = 136/180 (75.56%), Query Frame = 0
Query:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGE 256
            MRI KCYFCS P YPGHG  FVRND+K F FCRSKCHRNFNKKRNPRK  WTKAYRK  GKE+ VD+TF+FEKRRNRPVKYDR+L+GKT+ AMQ++++I+ RREE F+  RMR+AK ++    +VE++++VELLAPA A RE+ L NV +  + R A R   KAG   K     GSGE E
Sbjct:    1 MRIEKCYFCSSPCYPGHGIMFVRNDSKTFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKELAVDSTFEFEKRRNRPVKYDRNLMGKTIMAMQRVQSIKERREERFHANRMRDAKPEKVKQARVEIEKHVELLAPAVAKREEVLQNVLDSARARIATR-KIKAGENVKA---RGSGEIE 176          
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|397641567|gb|EJK74723.1| (hypothetical protein THAOC_03583 [Thalassiosira oceanica])

HSP 1 Score: 221.09 bits (562), Expect = 1.523e-69
Identity = 101/180 (56.11%), Postives = 133/180 (73.89%), Query Frame = 0
Query:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVKERQAVRAATKAGGKGKGGQRGGSGEGE 256
            MRI KCYFCS P YPGHG  FVRND+K F FCRSKCHRNFNKKRNPRK  WTKAYR+  GKE+ VD+ F+FEKRRNRPVKYDR+L+GKT+ AMQ++++I+ RREE F+  RM++AK ++ +  +VE+++++E++APA A+RE+ L NV +  +ER A R   K     +    G     E
Sbjct:    1 MRIEKCYFCSSPCYPGHGIVFVRNDSKSFRFCRSKCHRNFNKKRNPRKVAWTKAYRRTRGKELAVDSAFEFEKRRNRPVKYDRNLMGKTIMAMQRVQSIKERREERFHANRMQDAKAEKISQARVEIEKHIEVIAPAVANREEVLANVLDSARERIATRRVVKEKAIARDATAGDEKMEE 180          
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|1173958885|gb|OQS05182.1| (ribosome biogenesis protein RLP24 [Thraustotheca clavata])

HSP 1 Score: 207.223 bits (526), Expect = 3.444e-64
Identity = 97/166 (58.43%), Postives = 122/166 (73.49%), Query Frame = 0
Query:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAP-AAASREKALLNVREKVKERQAVRAATKAG 241
            MRI  CYFCS P+YPGHG  FVRND+KVF FCRSKCHRNFN+KRNPRK +WTKA+RKAAGKEM +D TFDFEK RNR VKYDRDLVG T+ AM +++ I+ +RE  FY+ RM++ K K+K     E+++N+ L+ P   A++E+A LN  +   ERQ     T  G
Sbjct:    1 MRIYTCYFCSSPVYPGHGMAFVRNDSKVFRFCRSKCHRNFNRKRNPRKVKWTKAFRKAAGKEMALDTTFDFEKIRNRAVKYDRDLVGATLHAMARVQQIKEKREAAFYKNRMKDVKAKQKVRDLAEIQQNISLVKPDVVAAKEQAQLNAHD--MERQTNVVGTDEG 164          
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|301092712|ref|XP_002997209.1| (ribosome biogenesis protein RLP24 [Phytophthora infestans T30-4] >gi|301126859|ref|XP_002909877.1| ribosome biogenesis protein RLP24 [Phytophthora infestans T30-4] >gi|262101245|gb|EEY59297.1| ribosome biogenesis protein RLP24 [Phytophthora infestans T30-4] >gi|262111519|gb|EEY69571.1| ribosome biogenesis protein RLP24 [Phytophthora infestans T30-4])

HSP 1 Score: 206.068 bits (523), Expect = 9.384e-64
Identity = 90/149 (60.40%), Postives = 123/149 (82.55%), Query Frame = 0
Query:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAAS-REKALLNV 224
            MRI  CYFCS P+YPGHG TFVRND+K+F FCRSKCH+NFN+KRNPRK +WTKA+RKAAGKEM +D TFDF+K+R+R VKYDR+L+G T+ A++++  I+ +RE  FY+ RM+++K K KA    E+++N+ L+ PAAA+ +++ALLNV
Sbjct:    1 MRIHTCYFCSSPVYPGHGITFVRNDSKIFRFCRSKCHKNFNRKRNPRKVKWTKAFRKAAGKEMALDTTFDFDKQRHRAVKYDRELMGATIHAIERVTQIKEKREAAFYKNRMKDSKAKAKARDLRELEQNITLIEPAAAALKDQALLNV 149          
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|1214708255|gb|OWZ19558.1| (Ribosome biogenesis protein RLP24 [Phytophthora megakarya])

HSP 1 Score: 205.682 bits (522), Expect = 1.672e-63
Identity = 90/149 (60.40%), Postives = 124/149 (83.22%), Query Frame = 0
Query:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAAS-REKALLNV 224
            MRI  CYFCS P+YPGHG TFVRND+K+F FCRSKCH+NFN+KRNPRK +WTKA+RKAAGKEM +D TFDF+K+R+R VKYDR+L+G T+ A++++  I+ +RE  FY+ RM+++K+KEKA    E+++N+ L+ PAAA+ +++A LNV
Sbjct:    1 MRIHTCYFCSSPVYPGHGITFVRNDSKIFRFCRSKCHKNFNRKRNPRKVKWTKAFRKAAGKEMALDTTFDFDKQRHRAVKYDRELMGATIHAIERVTQIKEKREAQFYKNRMKDSKVKEKARDLRELEQNITLIEPAAAALKDQAQLNV 149          
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|669165838|ref|XP_008618481.1| (50S ribosomal protein L24e [Saprolegnia diclina VS20] >gi|813176495|ref|XP_012205037.1| hypothetical protein SPRG_09902 [Saprolegnia parasitica CBS 223.65] >gi|530729814|gb|EQC28056.1| 50S ribosomal protein L24e [Saprolegnia diclina VS20] >gi|641530124|gb|KDO24266.1| hypothetical protein SPRG_09902 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 205.297 bits (521), Expect = 2.344e-63
Identity = 94/159 (59.12%), Postives = 121/159 (76.10%), Query Frame = 0
Query:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKALLNVREKVKERQAV 234
            MRI  CYFCS P+YPGHG  FVRND+KVF FCRSKCHRNFN+KRNPRK +WTKA+RKAAGKEM +D TFDFEK RNR VKYDRDLVG T+ AM +++ I+ +RE  FY+ RM+++K K+KA    E+++N+ L+ P    ++E+A LN  +  +   AV
Sbjct:    1 MRIHTCYFCSSPVYPGHGMAFVRNDSKVFRFCRSKCHRNFNRKRNPRKVKWTKAFRKAAGKEMALDTTFDFEKIRNRAVKYDRDLVGATLHAMARVQQIKEKREAAFYKNRMKDSKAKQKARDVAEIEQNISLIKPEIVFAKERAQLNAADNERVTNAV 159          
BLAST of EWM23125.1 vs. NCBI_GenBank
Match: gi|1173945249|gb|OQR93902.1| (ribosome biogenesis protein RLP24 [Achlya hypogyna])

HSP 1 Score: 204.142 bits (518), Expect = 6.670e-63
Identity = 92/151 (60.93%), Postives = 118/151 (78.15%), Query Frame = 0
Query:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKALLNVRE 226
            MRI  CYFCS P+YPGHG  FVRND+KVF FCRSKCHRNFN+KRNPRK +WTKA+RKAAGKEM +D TFDFEK RNR VKYDRDLVG T+ AM +++ I+ +RE  FY+ RM+++K K+KA    E+++N+ L+ P    ++E+A LN  +
Sbjct:    1 MRIHTCYFCSSPVYPGHGMAFVRNDSKVFRFCRSKCHRNFNRKRNPRKVKWTKAFRKAAGKEMALDTTFDFEKIRNRAVKYDRDLVGATLHAMARVQQIKEKREAAFYKNRMKDSKAKQKARDIAELEQNISLIKPDIVFAKERAQLNAED 151          
The following BLAST results are available for this feature:
BLAST of EWM23125.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104003|gb|EWM23125.1|0.000e+0100.00ribosome biogenesis protein rlp24 [Nannochloropsis... [more]
gi|553178829|ref|XP_005852610.1|8.626e-9881.28ribosome biogenesis protein rlp24 [Nannochloropsis... [more]
gi|1072232779|gb|OEU17510.1|8.571e-7259.4660S ribosomal protein L24 [Fragilariopsis cylindru... [more]
gi|223999709|ref|XP_002289527.1|4.250e-7162.22RL30, ribosomal protein 30 60S large ribosomal sub... [more]
gi|397641567|gb|EJK74723.1|1.523e-6956.11hypothetical protein THAOC_03583 [Thalassiosira oc... [more]
gi|1173958885|gb|OQS05182.1|3.444e-6458.43ribosome biogenesis protein RLP24 [Thraustotheca c... [more]
gi|301092712|ref|XP_002997209.1|9.384e-6460.40ribosome biogenesis protein RLP24 [Phytophthora in... [more]
gi|1214708255|gb|OWZ19558.1|1.672e-6360.40Ribosome biogenesis protein RLP24 [Phytophthora me... [more]
gi|669165838|ref|XP_008618481.1|2.344e-6359.1250S ribosomal protein L24e [Saprolegnia diclina VS... [more]
gi|1173945249|gb|OQR93902.1|6.670e-6360.93ribosome biogenesis protein RLP24 [Achlya hypogyna... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7561rna7561Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications