rna7560, rna7560 (mRNA) Nannochloropsis gaditana

Overview
Namerna7560
Unique Namerna7560
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length397
Alignment locationCM002472.1:246834..248547 -

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Properties
Property NameValue
Product40s ribosomal protein s9
Orig transcript idgnl|cribi|Naga_100229g9.2608.mrna
Orig protein idgnl|cribi|Naga_100229g9.2608
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:246834..248547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100229g9gene7318Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7560rna7560-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23131.1cds7542Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7560 ID=rna7560|Name=rna7560|organism=Nannochloropsis gaditana|type=mRNA|length=397bp
GGAGGAGGAGAAAAGCGGTTCCGGGCCGGTGTCGGCGGTGGAGGAGGCGG
CTTTGGAGGAGGTGGTGATGGACGTGGGACCTCTAGCGGCTCTCCCCAGG
CGGGGGCGGGAGATGCTCAGGCCCATCCTGAGGGAATTCGTGCGCCACGT
GACGCCCGCCCTGGTCCCACGGCTCATGATCCGGCTCCGACACTAGGGTG
TGGATCCCGCCCTCTCCAGTCCATCGAGAGGGTGGGAGGGCCTCGGCCGT
TCCGGGCTGGCCCCCGCAGGACTAGGACGGAGGAGGGCAGACGGCGGGGG
CGAGGGGAGAGCGGAAAGGGAAGTGCCGGGGGAGGGAGGGATTGAGGGGC
CGGGGTGTGGGCGAATGCAGAGGAGTGGGGACGGCAGAAGGGCCGGG
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protein sequence of rna7560

>rna7560-protein ID=rna7560-protein|Name=rna7560|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MFYKPTCEWFVVKSMSMDHGVLWGRRNQAFGQGTMHPPTLLSFPTTRTTI
TGSSMPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWR
VQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELD
FVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIP
SFLVRVDSEKHIDFSTTSPYGQGRKGRVARRREAQRAAAAGGGGADDDAG
EESE
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mRNA from alignment at CM002472.1:246834..248547-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7560 ID=rna7560|Name=rna7560|organism=Nannochloropsis gaditana|type=mRNA|length=1714bp|location=Sequence derived from alignment at CM002472.1:246834..248547- (Nannochloropsis gaditana)
TTGGAGGTGTCGTGCGGTGCCCACGTGTTGTGTTGACCCGGACACGATGG
CAAATAATGTAGTGTGTGATGCCGAAGAGTGGGTGGCTGCGGCAGCGGAG
GTGACCACCGCAGGCGCGGTCGTGTCCAGCCCTTCCCTTTGCTTCTTTCT
TTCTCTCCACCAGGCTTTGATGGGGGGGTGGTAGCTGTAAATGCACCTCC
ACGGTGAACTACGTTGGTGATCACCCCGTGCGGACACACCACAGTGTATG
TTTTACAAGCCCACATGCGAGTGGTTTGTGGTGAAAAGCATGTCCATGGA
CCACGGTGTCTTGTGGGGAAGGAGAAATCAAGCGTTCGGCCAGGGCACCA
TGCATCCTCCCACCTTGCTAAGCTTTCCTACCACACGCACGACAATCACA
GGGTCAAGTATGCCTTCCATTGCTTTTCGTCGGAATTGTAAGTGCCTAGT
CTCCCGCCCTATGCTAAATCGTCGCGGCGTGTGCACTGACTCCTCTTTCC
CTCTTGTCTTTCCCCAGACCGGAAGACGGACAAGACTCCGCGTCGCCCCT
TCGAGAAAGAGCGCCTCGACCAAGAACTGAAGCTGTGCGGCGAGTACGGT
CTTCGGTGCAAGGCAGAGATTTGGCGTGTGCAATTTGCGCTGGCTAAGAT
CCGTAAAGCAGCCCGTGAGCTGTTGACCTTGGACGAGAAGGACCCGCGCC
GAGTCTTCGAGGGCCCGGCACTCCTGCGACGCTGCGTCCGCGCCGGTCTC
CTCGAGCAGGATAAGGCGGAGTTGGATTTCGTCTTACAATTGACGACACA
AAAGCTGTTGGAGCGACGTTTGCAGGTACGGGAAGGTGGACATTGTGTGT
GGAGGTGGGGTGGCCGTAGAGTGGAAGAGAGGGAAGCTGCAGTTAAAGTC
GCCTGCACTTATCCGTGTCATGCTTGGCAGTTCCGTTTGGCCGGGGGCTT
AGACTGATTAGAAGCATAGAGATGTAACTATCGGCATCACGTCGGTAAAC
CCCTCGGCACTGCTTAATTATGCCCCTCCTTCTTTCCCCACTTCCTCCCT
CTCTTCCTCCCTTCCTTCCTCCTCAGACCAAGGTCTTCAAGCAGTCTTTG
GCCAAGTCCATCCACCATGCCCGTGTCCTGATCCGACAGCGCCACATCCG
GGTCGGGAAGCAGCTCGTCAACATTCCCTCCTTCTTGGTGCGCGTGGACT
CGGAGAAGCACATCGATTTCTCCACCACGTCCCCCTACGGACAGGGCAGG
AAAGGTCGCGTGGCCCGTCGCCGGGAGGCTCAAAGGGCGGCCGCGGCGGG
AGGAGGAGGAGCAGACGACGACGCAGGGGAGGAGTCGGAGTAAGGCGGGA
TGGGAGGGAGGGAACGGCGTGTGCTCGTGATGGTGGTTGCGGTCAGGATG
GTTCTAGACGCGCGGGCTAGACAGAGGGCAATGGGCCAGTGGAGTGATGT
CTGGAACCCGTGCTGTGCAGCGTGCCTGTGTGCATGCGCAAGCTGAAGGG
GGGGTCGGTGGGAAGGGAAGGTGGCCACCCTGGACGCAGCGATGGTCACG
AGAAGGAGCGACGGGAGGAAAAGGGAACGGAAGAGACATTCATTGACACG
GCCTCAAAAGGTCTGTCGGACAAGGGCTTACGCCGGGTGCCACGGACCGG
GCGTGGTTTCTTCGTTCCATTACTTGTTCCTGCCCTGCTGCCTGCTCGTT
GTTTCAACCGCCCC
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Coding sequence (CDS) from alignment at CM002472.1:246834..248547-

>rna7560 ID=rna7560|Name=rna7560|organism=Nannochloropsis gaditana|type=CDS|length=2295bp|location=Sequence derived from alignment at CM002472.1:246834..248547- (Nannochloropsis gaditana)
ACCAAGGTCTTCAAGCAGTCTTTGGCCAAGTCCATCCACCATGCCCGTGT
CCTGATCCGACAGCGCCACATCCGGGTCGGGAAGCAGCTCGTCAACATTC
CCTCCTTCTTGGTGCGCGTGGACTCGGAGAAGCACATCGATTTCTCCACC
ACGTCCCCCTACGGACAGGGCAGGAAAGGTCGCGTGGCCCGTCGCCGGGA
GGCTCAAAGGGCGGCCGCGGCGGGAGGAGGAGGAGCAGACGACGACGCAG
GGGAGGAGTCGGAGTAAACCGGAAGACGGACAAGACTCCGCGTCGCCCCT
TCGAGAAAGAGCGCCTCGACCAAGAACTGAAGCTGTGCGGCGAGTACGGT
CTTCGGTGCAAGGCAGAGATTTGGCGTGTGCAATTTGCGCTGGCTAAGAT
CCGTAAAGCAGCCCGTGAGCTGTTGACCTTGGACGAGAAGGACCCGCGCC
GAGTCTTCGAGGGCCCGGCACTCCTGCGACGCTGCGTCCGCGCCGGTCTC
CTCGAGCAGGATAAGGCGGAGTTGGATTTCGTCTTACAATTGACGACACA
AAAGCTGTTGGAGCGACGTTTGCAGATGTTTTACAAGCCCACATGCGAGT
GGTTTGTGGTGAAAAGCATGTCCATGGACCACGGTGTCTTGTGGGGAAGG
AGAAATCAAGCGTTCGGCCAGGGCACCATGCATCCTCCCACCTTGCTAAG
CTTTCCTACCACACGCACGACAATCACAGGGTCAAGTATGCCTTCCATTG
CTTTTCGTCGGAATTACCAAGGTCTTCAAGCAGTCTTTGGCCAAGTCCAT
CCACCATGCCCGTGTCCTGATCCGACAGCGCCACATCCGGGTCGGGAAGC
AGCTCGTCAACATTCCCTCCTTCTTGGTGCGCGTGGACTCGGAGAAGCAC
ATCGATTTCTCCACCACGTCCCCCTACGGACAGGGCAGGAAAGGTCGCGT
GGCCCGTCGCCGGGAGGCTCAAAGGGCGGCCGCGGCGGGAGGAGGAGGAG
CAGACGACGACGCAGGGGAGGAGTCGGAGTAAACCGGAAGACGGACAAGA
CTCCGCGTCGCCCCTTCGAGAAAGAGCGCCTCGACCAAGAACTGAAGCTG
TGCGGCGAGTACGGTCTTCGGTGCAAGGCAGAGATTTGGCGTGTGCAATT
TGCGCTGGCTAAGATCCGTAAAGCAGCCCGTGAGCTGTTGACCTTGGACG
AGAAGGACCCGCGCCGAGTCTTCGAGGGCCCGGCACTCCTGCGACGCTGC
GTCCGCGCCGGTCTCCTCGAGCAGGATAAGGCGGAGTTGGATTTCGTCTT
ACAATTGACGACACAAAAGCTGTTGGAGCGACGTTTGCAGATGTTTTACA
AGCCCACATGCGAGTGGTTTGTGGTGAAAAGCATGTCCATGGACCACGGT
GTCTTGTGGGGAAGGAGAAATCAAGCGTTCGGCCAGGGCACCATGCATCC
TCCCACCTTGCTAAGCTTTCCTACCACACGCACGACAATCACAGGGTCAA
GTATGCCTTCCATTGCTTTTCGTCGGAATTACCAAGGTCTTCAAGCAGTC
TTTGGCCAAGTCCATCCACCATGCCCGTGTCCTGATCCGACAGCGCCACA
TCCGGGTCGGGAAGCAGCTCGTCAACATTCCCTCCTTCTTGGTGCGCGTG
GACTCGGAGAAGCACATCGATTTCTCCACCACGTCCCCCTACGGACAGGG
CAGGAAAGGTCGCGTGGCCCGTCGCCGGGAGGCTCAAAGGGCGGCCGCGG
CGGGAGGAGGAGGAGCAGACGACGACGCAGGGGAGGAGTCGGAGTAAACC
GGAAGACGGACAAGACTCCGCGTCGCCCCTTCGAGAAAGAGCGCCTCGAC
CAAGAACTGAAGCTGTGCGGCGAGTACGGTCTTCGGTGCAAGGCAGAGAT
TTGGCGTGTGCAATTTGCGCTGGCTAAGATCCGTAAAGCAGCCCGTGAGC
TGTTGACCTTGGACGAGAAGGACCCGCGCCGAGTCTTCGAGGGCCCGGCA
CTCCTGCGACGCTGCGTCCGCGCCGGTCTCCTCGAGCAGGATAAGGCGGA
GTTGGATTTCGTCTTACAATTGACGACACAAAAGCTGTTGGAGCGACGTT
TGCAGATGTTTTACAAGCCCACATGCGAGTGGTTTGTGGTGAAAAGCATG
TCCATGGACCACGGTGTCTTGTGGGGAAGGAGAAATCAAGCGTTCGGCCA
GGGCACCATGCATCCTCCCACCTTGCTAAGCTTTCCTACCACACGCACGA
CAATCACAGGGTCAAGTATGCCTTCCATTGCTTTTCGTCGGAATT
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Synonyms
Publications