EWM23131.1, cds7542 (CDS) Nannochloropsis gaditana

Overview
NameEWM23131.1
Unique Namecds7542
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:248111..248300 -
Alignment locationCM002472.1:247723..248030 -
Alignment locationCM002472.1:247205..247471 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23131.1
Product40s ribosomal protein s9
Orig transcript idgnl|cribi|Naga_100229g9.2608.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:248111..248300 -
CM002472.1supercontigCM002472.1:247723..248030 -
CM002472.1supercontigCM002472.1:247205..247471 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0015935small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0019843rRNA binding
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR018079Ribosomal_S4_CS
IPR022801Ribosomal_S4/S9
IPR001912Ribosomal_S4/S9_N
IPR005710Ribosomal_S4/S9_euk/arc
IPR002942S4_RNA-bd
Homology
BLAST of EWM23131.1 vs. NCBI_GenBank
Match: gi|585104009|gb|EWM23131.1| (40s ribosomal protein s9 [Nannochloropsis gaditana])

HSP 1 Score: 523.087 bits (1346), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0
Query:    1 MFYKPTCEWFVVKSMSMDHGVLWGRRNQAFGQGTMHPPTLLSFPTTRTTITGSSMPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGRKGRVARRREAQRAAAAGGGGADDDAGEESE 254
            MFYKPTCEWFVVKSMSMDHGVLWGRRNQAFGQGTMHPPTLLSFPTTRTTITGSSMPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGRKGRVARRREAQRAAAAGGGGADDDAGEESE
Sbjct:    1 MFYKPTCEWFVVKSMSMDHGVLWGRRNQAFGQGTMHPPTLLSFPTTRTTITGSSMPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGRKGRVARRREAQRAAAAGGGGADDDAGEESE 254          
BLAST of EWM23131.1 vs. NCBI_GenBank
Match: gi|553178832|ref|XP_005852611.1| (small subunit ribosomal protein S9e [Nannochloropsis gaditana CCMP526] >gi|422295924|gb|EKU23223.1| small subunit ribosomal protein S9e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 404.06 bits (1037), Expect = 1.637e-141
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query:   55 MPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGRKGRVARRREAQRAAAAGGGGADDDAGEESE 254
            MPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGRKGRVARRREAQRAAAAGGGGADDDAGEESE
Sbjct:    1 MPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGRKGRVARRREAQRAAAAGGGGADDDAGEESE 200          
BLAST of EWM23131.1 vs. NCBI_GenBank
Match: gi|299469776|emb|CBN76630.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 300.056 bits (767), Expect = 1.583e-100
Identity = 153/194 (78.87%), Postives = 169/194 (87.11%), Query Frame = 0
Query:   55 MPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGRKGRVARRREAQRAAAAGGGGADDD 248
            MP +   RNYRKT KTPRRP+EKERLD ELKLCGEYGLRCK EIWRVQFALAKIRKAAR+LLTLD KDP+R+FEGPALLRR  R GLL +D+ ELDFVLQLTT+K+LERRLQTKVFKQ LAKSIHHARVLI+ RHIRVGKQLVN+P F+VR+DSEKHIDFS TSPYGQGR GRVAR+R A +AAA G  G + D
Sbjct:    1 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDEKELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDDGEESD 194          
BLAST of EWM23131.1 vs. NCBI_GenBank
Match: gi|673044957|ref|XP_008876439.1| (ribosomal protein S4 [Aphanomyces invadans] >gi|574467827|gb|ETV94848.1| ribosomal protein S4 [Aphanomyces invadans])

HSP 1 Score: 285.034 bits (728), Expect = 1.400e-94
Identity = 149/194 (76.80%), Postives = 170/194 (87.63%), Query Frame = 0
Query:   55 MPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGRKGRVARRREAQRAAAAGGGGADDD 248
            MP I+  RNYRKT +TP R FEKERLDQE+KL GEYGLRCK EIWRVQ+ LAK+RKAAR+LLTLD KDP+R+FEGPAL+RR  R GLL +D+ ELDFVLQ+ TQKLLERRLQTKVFKQ LAKSIHHAR LI+QRHIRVG+QLV++PSF+VR+DSEKHIDFS TSPYGQGR GRVAR+R AQRAAAA GG  ++D
Sbjct:    1 MPKISRHRNYRKTYRTPSRAFEKERLDQEMKLLGEYGLRCKREIWRVQYTLAKLRKAARQLLTLDPKDPKRLFEGPALMRRLKRYGLLAEDENELDFVLQMNTQKLLERRLQTKVFKQGLAKSIHHARTLIKQRHIRVGRQLVDVPSFMVRLDSEKHIDFSVTSPYGQGRPGRVARKRAAQRAAAANGGAEEED 194          
BLAST of EWM23131.1 vs. NCBI_GenBank
Match: gi|698826682|ref|XP_009846369.1| (ribosomal protein S4 [Aphanomyces astaci] >gi|574098404|gb|ETV64145.1| ribosomal protein S4 [Aphanomyces astaci])

HSP 1 Score: 283.108 bits (723), Expect = 7.971e-94
Identity = 149/194 (76.80%), Postives = 169/194 (87.11%), Query Frame = 0
Query:   55 MPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGRKGRVARRREAQRAAAAGGGGADDD 248
            MP I+  RNYRKT +TP R FEKERLDQE+KL GEYGLRCK EIWRVQ+ LAK+RKAAR+LLTLD KDP+R+FEGPAL+RR  R GLL  D+ ELDFVLQ+ TQKLLERRLQTKVFKQ LAKSIHHAR LI+QRHIRVG+QLV++PSF+VR+DSEKHIDFS TSPYGQGR GRVAR+R AQRAAAA GG  ++D
Sbjct:    1 MPKISRHRNYRKTYRTPSRAFEKERLDQEMKLLGEYGLRCKREIWRVQYTLAKLRKAARQLLTLDPKDPKRLFEGPALIRRLKRYGLLADDENELDFVLQMNTQKLLERRLQTKVFKQGLAKSIHHARTLIKQRHIRVGRQLVDVPSFMVRLDSEKHIDFSVTSPYGQGRPGRVARKRAAQRAAAANGGADEED 194          
BLAST of EWM23131.1 vs. NCBI_GenBank
Match: gi|970647675|gb|KUF87430.1| (hypothetical protein AM588_10003515 [Phytophthora nicotianae])

HSP 1 Score: 282.337 bits (721), Expect = 1.362e-93
Identity = 140/194 (72.16%), Postives = 159/194 (81.96%), Query Frame = 0
Query:   55 MPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGRKGRVARRREAQRAAAAGGGGADDD 248
            MP I+  RNYRKT +TP R FEKERLDQELKL GEYGLRCK EIWRVQ+AL+K+RKAARELLTLD KDP+R+FEG ALLRR  R G+L +D+ ELDFVL+L  QKLLERRLQTKVFKQ+LAKSIHHARVLI+QRHIRVGKQLV++PSFLVR+DSEKHIDF+ TSPYGQGR         A     A  GG +D+
Sbjct:    1 MPKISRHRNYRKTYRTPSRAFEKERLDQELKLLGEYGLRCKREIWRVQYALSKLRKAARELLTLDPKDPKRLFEGSALLRRLKRYGMLAEDENELDFVLRLNVQKLLERRLQTKVFKQNLAKSIHHARVLIKQRHIRVGKQLVDVPSFLVRMDSEKHIDFAVTSPYGQGRPA-------ASPVVRAAAGGEEDE 187          
BLAST of EWM23131.1 vs. NCBI_GenBank
Match: gi|669165192|ref|XP_008618158.1| (30S ribosomal protein S4 [Saprolegnia diclina VS20] >gi|813198564|ref|XP_012208865.1| 30S ribosomal protein S4 [Saprolegnia parasitica CBS 223.65] >gi|530730268|gb|EQC28510.1| 30S ribosomal protein S4 [Saprolegnia diclina VS20] >gi|641526008|gb|KDO20408.1| 30S ribosomal protein S4 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 280.026 bits (715), Expect = 1.477e-92
Identity = 150/194 (77.32%), Postives = 167/194 (86.08%), Query Frame = 0
Query:   55 MPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGRKGRVARRREAQRAAAAGGGGADDD 248
            MP I+  RNYRKT +TP R F KERLDQELKL GEYGLRCK EIWRVQF LAK+RKAAR+LLTLD KDP+R+FEGPAL+RR  R GLL  D+ ELDFVL+L  QKLLERRLQTKVFKQ LAKSIHHAR LI+QRHIRVG+QLV++PSF+VR+DSEKHIDFS TSPYGQGR GRVAR+R AQRAAAA GG  +DD
Sbjct:    1 MPKISRHRNYRKTYRTPTRAFGKERLDQELKLVGEYGLRCKREIWRVQFTLAKLRKAARQLLTLDAKDPKRLFEGPALMRRLKRYGLLADDENELDFVLRLNIQKLLERRLQTKVFKQGLAKSIHHARCLIKQRHIRVGRQLVDVPSFMVRLDSEKHIDFSVTSPYGQGRPGRVARKRAAQRAAAANGGAEEDD 194          
BLAST of EWM23131.1 vs. NCBI_GenBank
Match: gi|397635346|gb|EJK71823.1| (hypothetical protein THAOC_06697 [Thalassiosira oceanica])

HSP 1 Score: 278.1 bits (710), Expect = 5.332e-92
Identity = 139/174 (79.89%), Postives = 147/174 (84.48%), Query Frame = 0
Query:   55 MPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGRKGRV 228
            MP+ A  RNYRKT KTPRRP+EKERLD ELKL GEYGLRCK EIWRVQ+ALAK+RKAAR LLTLD KDP+R+FEG ALLRR  R GLL  D+ ELDFVLQLTTQKLLERRLQTKVFKQ LAKSIHHARVLIRQRHI VG QLVN+PSF VR  SEKHID S  SPYGQG  GRV
Sbjct:    1 MPTNAQHRNYRKTYKTPRRPYEKERLDAELKLVGEYGLRCKREIWRVQYALAKLRKAARVLLTLDPKDPKRIFEGAALLRRMSRYGLLADDELELDFVLQLTTQKLLERRLQTKVFKQGLAKSIHHARVLIRQRHISVGGQLVNVPSFNVRTSSEKHIDISANSPYGQGAPGRV 174          
BLAST of EWM23131.1 vs. NCBI_GenBank
Match: gi|1173926627|gb|OQR80807.1| (40S ribosomal protein S9-1 [Achlya hypogyna])

HSP 1 Score: 280.796 bits (717), Expect = 8.933e-92
Identity = 150/194 (77.32%), Postives = 167/194 (86.08%), Query Frame = 0
Query:   55 MPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGRKGRVARRREAQRAAAAGGGGADDD 248
            MP I+  RNYRKT +TP R F KERLDQELKL GEYGLRCK EIWRVQF LAK+RKAAR+LLTLD KDP+R+FEGPAL+RR  R GLL  D+ ELDFVL+L  QKLLERRLQTKVFKQ LAKSIHHAR LI+QRHIRVG+QLV++PSF+VR+DSEKHIDFS TSPYGQGR GRVAR+R AQRAAAA GG  +DD
Sbjct:    1 MPKISRHRNYRKTYRTPTRAFGKERLDQELKLVGEYGLRCKREIWRVQFTLAKLRKAARQLLTLDAKDPKRLFEGPALMRRLKRYGLLADDENELDFVLRLNIQKLLERRLQTKVFKQGLAKSIHHARCLIKQRHIRVGRQLVDVPSFMVRLDSEKHIDFSVTSPYGQGRPGRVARKRAAQRAAAANGGEEEDD 194          
BLAST of EWM23131.1 vs. NCBI_GenBank
Match: gi|676390645|ref|XP_009038600.1| (hypothetical protein AURANDRAFT_28757 [Aureococcus anophagefferens] >gi|323450976|gb|EGB06855.1| hypothetical protein AURANDRAFT_28757 [Aureococcus anophagefferens])

HSP 1 Score: 277.715 bits (709), Expect = 1.036e-91
Identity = 134/170 (78.82%), Postives = 149/170 (87.65%), Query Frame = 0
Query:   55 MPSIAFRRNYRKTDKTPRRPFEKERLDQELKLCGEYGLRCKAEIWRVQFALAKIRKAARELLTLDEKDPRRVFEGPALLRRCVRAGLLEQDKAELDFVLQLTTQKLLERRLQTKVFKQSLAKSIHHARVLIRQRHIRVGKQLVNIPSFLVRVDSEKHIDFSTTSPYGQGR 224
            MP  +F RNYRKT KTPRRPFEKER+D ELKL GEYGLRCK E+WR Q ALAK+RKAAR LLTLD KDP R+FE PALLRR  R GLL++ + ELD VLQ+TTQ+LLERRLQTKVFKQ LAKSIHHARVLI+QRHIRVGKQ+VN+PSFLVR+DSEKHIDF+ TSPYGQGR
Sbjct:    1 MPKTSFLRNYRKTSKTPRRPFEKERIDGELKLVGEYGLRCKRELWRTQLALAKLRKAARTLLTLDTKDPARMFEAPALLRRLQRYGLLDETELELDAVLQMTTQRLLERRLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQVVNVPSFLVRLDSEKHIDFAITSPYGQGR 170          
The following BLAST results are available for this feature:
BLAST of EWM23131.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104009|gb|EWM23131.1|0.000e+0100.0040s ribosomal protein s9 [Nannochloropsis gaditana... [more]
gi|553178832|ref|XP_005852611.1|1.637e-141100.00small subunit ribosomal protein S9e [Nannochlorops... [more]
gi|299469776|emb|CBN76630.1|1.583e-10078.87conserved unknown protein [Ectocarpus siliculosus][more]
gi|673044957|ref|XP_008876439.1|1.400e-9476.80ribosomal protein S4 [Aphanomyces invadans] >gi|57... [more]
gi|698826682|ref|XP_009846369.1|7.971e-9476.80ribosomal protein S4 [Aphanomyces astaci] >gi|5740... [more]
gi|970647675|gb|KUF87430.1|1.362e-9372.16hypothetical protein AM588_10003515 [Phytophthora ... [more]
gi|669165192|ref|XP_008618158.1|1.477e-9277.3230S ribosomal protein S4 [Saprolegnia diclina VS20... [more]
gi|397635346|gb|EJK71823.1|5.332e-9279.89hypothetical protein THAOC_06697 [Thalassiosira oc... [more]
gi|1173926627|gb|OQR80807.1|8.933e-9277.3240S ribosomal protein S9-1 [Achlya hypogyna][more]
gi|676390645|ref|XP_009038600.1|1.036e-9178.82hypothetical protein AURANDRAFT_28757 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7560rna7560Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications