rna7557, rna7557 (mRNA) Nannochloropsis gaditana

Overview
Namerna7557
Unique Namerna7557
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2527
Alignment locationCM002472.1:238340..240252 -

Link to JBrowse

Properties
Property NameValue
ProductPirin, C-terminal domain protein
Orig transcript idgnl|cribi|Naga_100523g1.1487.mrna
Orig protein idgnl|cribi|Naga_100523g1.1487
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:238340..240252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100523g1gene7315Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23134.1cds7539Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7557rna7557-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7557 ID=rna7557|Name=rna7557|organism=Nannochloropsis gaditana|type=mRNA|length=2527bp
CCCACAGACTCCCAGCCCTGAGAAGACCTGGCGAGCGCGGCAACACAACA
CGCGACTTTCGAAGCGCGCCTGCCGACTTTAGAATCTAGGAGAGCCACAC
CAGCGCATTCATGGCTACCATAGAGAAATTCGAGAACATAGGCTTGTCAG
GGCAGTCGGTGGGAACATTGACGTTCACGGGGAAGGGGTTGGAATGGCGG
GGCCCGAGCAACGCCAAGACGGTGCAGGCCAAGGACATTTTACGCGCCTC
CTGGTCGGTCTTCGGGAAGTGGGGCCACCTCCGTCTGTTCCTGAAGAATG
GGAAAGCGCTGCGGTGCGACGGCTTCCTCCGCACCGAAGAAGAGCGTGTG
CGAGAGGTTTTCCAATCGAATTATTCCCTCTCCCTGGAACGCGAGGTCCT
GAACTCGGGCGGGGCCAACTACGGCGACCTCATCTTCGAGGATAACACCC
TGGTCATGTCCTTAGAGGATAAACCCGTGCTCGAGCTACCGCTGGGTGCG
GTCTCCCAGTGCGTGCTTCCGGGGACGGGGAACATCAAGAACGAGGTGGA
GCTCCAATTCGTGGAGACGGACGCTGCCGACAGGGACGAGGACACCCTGG
TCGAGGTCCGTTTCTACATCCCGCCCGGAGAGGAGGAGGACGACGGCGCC
GAGGCCTTTCAGAAAAACGTGCTGGCCCGCACGACCGTCCAAGCCTCCAC
GGGCGACGCCCTGGTCACCTTCGCGGAGGACGAGGGCTTCTTCCTCTACC
CCCGCGGGCGGTATGTGATCAATCTGTACACGAACTCCTTCCGGTTGCAC
GGCGCCAAGTACGACCACAAGATGGCCTACGATGACATCATCCACTTTTT
CCTTCTGGAGCGGCCCGACCACCGGTGGGCCTTTGTGATCGGTCTGAAGA
AGCCCATCCGCCAGGGGCAGCAACGCTACAATTACCTGGTTTTACAGACC
CATGACGGCGCGAGCGAGGTGACGGTGAACATGACGGAGGAGGAGCTGCG
GGAGAAGTACGAGGACAGGCTCGAGCAGACGATGGCCGGGCCCATGCACC
ACTTGGTCGCTAAGACCTTCAAGATCCTCTCCGGGAAGAAAGTCTACCAT
TCCCAGCGCTTCCAGTCCGCCCGCAACGTGCGCTGGGTTAAATGCTCGCT
CAAGGCTAGCGAGGGCTTGCTCTATCCGCTCGACAAGGCCTTCATGTTCA
TCTACAAGCCGACGCTCTACATCCCCTTCAAAGACATCGAGTCCGTCTCC
TTCGACCGGGTGGGCGGCGCCGTGGGCGTGACCCGTACCTTTGACCTGAG
GGTGCTTCTGCGGCCCCTGGACGGCGATGTCCGCCGGGAGTACATCTTTG
CGCAGATCGAGAAGGAAGAGCACGCGAATCTCTCCCAGTACTTGCGGGAC
AAGCAGACCATCAAAGTCATCGACGACAAGCCCGTTTCCCAGGCGAAGAT
CGATCGGATGCTGGAGGAGGAGGAGGAGGGAGGGGAGGAGGAGGACGAGG
AGGACGAGGAGGACGAGAGTTACAAGGGCGAGGAGAGCGGGAGTGAGGGG
AGTGGAAGCGAAGGGAGCGAAGAAGGGGGTTCGGACGACTCCTCCAGCGG
GGCGGAGATGGTGGAGGAGAGCGACTTGGAGGAGATGACGGGGATCAAGA
AGGAGAAAAGCTCGAAGGGGGGAAAGAAGAAGAAAGAGAAGGGGAGTGGC
GAGGAAGGGAGCGAGGAGGAGGAGGAGGAGGAGAGCGACGCAGGGACGGG
AGGGAAGAAGAGGAAAGGAAAAAAAGAGAAGGCGGGCCCGGGGAAGAAGA
AAAAGCGCGCGAAAAAGGACCCGAACGCGCCGAAGCAGGCGCTGTCTGCC
TACATGCTCTTCACCCAGGCCTCGCGGGAGGCGGTCAAGGCAGAGCAGCC
CGGGCTGAAGGTCACGGAGATCTCCAAGGTGATGGGCGAACGATGGCGGG
CGCTCTCGGCGGAGGAGAAGAAGGTGTTCGAGGACCAGGCAGCCAGCGCC
AAGGTCCGGTACGGGGAAGAACTGCGGGCCTACAAGGCGAAGAAGAAGGA
GGAAGCGGCGGAGAGCGGGGGGAGGGCCGTCCGGGAGTGGGGGTGAGTCA
TCGGAGTCAGAGGGGGAGCGCGAGGTGGAGGAGAAGGCGCCGCCGGCGAA
GAAGAGGACGCGGGCCACGGCGGGGGAGGGCGGGGCAGTGGTGGAACTGG
CGAGCAGCGACAGCAACGAGGAGTCCTCGGTGGCGTCCGAGTCCTCTGCG
GAGAGTGGGAGCAGCGGCGACGAGAGCGGGAGTGGGAGCGAGGAGGGGAG
CGGGTAGGGGGGTGAGGGGGGGACAAGACGGCGACCAGAGGGGAAGCGGG
TTGGATGAGGCCATGAGATGGACGAGGAGGATGGGGACGATGCCCGGGGT
CAAAGACATGGAGAGGGGAAAGGATGCAATTGCGAGGAGGTCTGGGAGCG
GACCGGAACCATAGTTGCTCTGCTCTTTGTTCCTTTTAAGAGTCGCGGCG
CCCTTTCGTTCGTGCGCCTCGCATGCC
back to top

protein sequence of rna7557

>rna7557-protein ID=rna7557-protein|Name=rna7557|organism=Nannochloropsis gaditana|type=polypeptide|length=322bp
MARSPCSGSGCGCRLPNLLVRHSRSPSLPPSLPQIYGDGAAQLLTAGRGV
LHEEMWDFSNGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIP
EVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARME
TLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGEN
QEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDF
LVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEA
WKAMCDGRGRRSGGGEGEGGEA
back to top

mRNA from alignment at CM002472.1:238340..240252-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7557 ID=rna7557|Name=rna7557|organism=Nannochloropsis gaditana|type=mRNA|length=1913bp|location=Sequence derived from alignment at CM002472.1:238340..240252- (Nannochloropsis gaditana)
ACAGAGAGGATGGCAGCTCTGGCGAGGGCAAGTCGTCCATCAATGGGGTT
TCTGTCCCTTTGCTGTGCAATGGTGTGCTCTGCCCTTCCTGTTCTGGGGT
TCACCCTACCTCCGAGACCCCTCACAACCCTGCGTGCACCGGCTTTCCCA
CCGTCGGCATCGACCGAAAGATCAGCAACACCAACACACTCTCATTACTC
AAGATGGCAAAAAAGTAGAGAGATGTCATCCTTCTTGCATTCACGAAGCG
GAGAGTCCCGTTTGGGACGGGACCGGTCCCCGGTCGTAACCCCCCGTTGG
GCGTCGGCACAGGTCACTTTCACATCGTCCTCGGCCCCTCTGGAAAGCTC
TGTTGAGGAGCCCCCTCCTCTTCGGCAGGTGGCTCTCGTCACCAAATTTG
CCCGTCTCCCCTTCTGGCCGATTTGGCACGGGCTTGTCATCATGTTCCTC
GATCAAATCGGGCTAAAAACGCTCAGCCAGACCGTGGAAGCTGCCATAGG
GGGACGGGTGGCACCGATGATATACCTTCCGAGCTCCCGCTCCACCGAGG
CCAACGATGGCCTGAGTGAGGAGCGAGGCCGTCCTCGGGACCCCGACCAA
GGCCCGGCCGAGGGAGGCGCGGGGAGGGCGGAGGCCGACCTCCTGTCTCT
CTCGGATCCCTTTCTCATGAACGTGCACCATCGCCACACCTTCTTTCAGC
TCGATCCACTGCGCTGGCTGCAGAGTCTGGTATTCCCCGAGGGCTTTCCT
GCCCATCCACATGCCGGTTTCAGCACCCTCACGTATGCGCTCAAGGGACG
GATGCGGCACCGGGACTCCCTCGGGGTGAAGCAGGTGAGGGAAAGGGGGA
GCGAGACGAGGGATTGAGGTCGAAGTACTCTCACCGATGGCGAGATCCCC
CTGTTCGGGATCCGGTTGTGGTTGCCGCCTGCCCAATCTACTCGTTCGTC
ACTCTCGTTCCCCCTCCCTCCCTCCGTCCCTGCCTCAGATCTACGGGGAC
GGCGCGGCTCAGCTGCTCACCGCGGGAAGGGGCGTGCTTCACGAAGAAAT
GTGGGACTTCAGCAACGGGAGGGACGTCGAGCTGTTTCAGATCTGGATCA
ACCTGCCCGGGCGCCTTAAGGGCACCGAGCCCTCTCTCCAATTGGTCGGA
GAGACAGACAGTCCGGACGCGGCGGGCCCCATCCCCGAGGTGACCCTCCT
CTCCTCCGCCCTTTCTGAACGCTCCTCCCCGCCCTTGCCCCCTGCTTCCC
CTCTTCTGCCGGCGCCCTCCTCCACGCGCAAGGTCGTGGTCCGTATTTTG
GTGGGGGAGGCACACGGGGTCCGGGCCCGCATGGAGACGCTGACGCCGCA
GACAGTCCTGCACGTGAGCATGGACGCCGGGAGCTCCTGGGCCTTCCCGG
TGGCCGCCAGTCATACCCTGCATGTGTACGTGAGGAAAGGGCCGGTGGAC
ATCTTGGTGGGGGCGGGAGAAGGACGAGGCGAGAATCAGGAAGGCGCCAG
CCGGGAAAAGAGGAGCCCGCGTTTCGTGCGGGTGGAGACGCATGAGACTG
CCTTCACGCACAAGGGCGGGGAGCTCCTTCAAGTTCACTGTCCGCCCGTG
GGTACCGGAGGAGGACGAGGGGGGGAAGGTGATTTCCTAGTGCTGGCGGG
GGAGCCGCTCGGCGAGCCGGTCGCGGCGTCAGGGCCCTGGGTGTTCAATG
ACGCTGCGGATGCACAGCGTGCCTACGCACGCTATCAGGCAGGTGTGTTC
GGTCTCCCCTGGGGGCCCGCATTGGACGACGAAGCGTGGAAGGCGATGTG
CGACGGGAGAGGGAGGAGGTCGGGGGGGGGGGAAGGGGAGGGTGGAGAGG
CGTGATGGACAGGGGCGGACATAAATATGTAAATTAAACAATGGGAGACA
TCGCAAGAAACGA
back to top

Coding sequence (CDS) from alignment at CM002472.1:238340..240252-

>rna7557 ID=rna7557|Name=rna7557|organism=Nannochloropsis gaditana|type=CDS|length=969bp|location=Sequence derived from alignment at CM002472.1:238340..240252- (Nannochloropsis gaditana)
ATGGCGAGATCCCCCTGTTCGGGATCCGGTTGTGGTTGCCGCCTGCCCAA
TCTACTCGTTCGTCACTCTCGTTCCCCCTCCCTCCCTCCGTCCCTGCCTC
AGATCTACGGGGACGGCGCGGCTCAGCTGCTCACCGCGGGAAGGGGCGTG
CTTCACGAAGAAATGTGGGACTTCAGCAACGGGAGGGACGTCGAGCTGTT
TCAGATCTGGATCAACCTGCCCGGGCGCCTTAAGGGCACCGAGCCCTCTC
TCCAATTGGTCGGAGAGACAGACAGTCCGGACGCGGCGGGCCCCATCCCC
GAGGTGACCCTCCTCTCCTCCGCCCTTTCTGAACGCTCCTCCCCGCCCTT
GCCCCCTGCTTCCCCTCTTCTGCCGGCGCCCTCCTCCACGCGCAAGGTCG
TGGTCCGTATTTTGGTGGGGGAGGCACACGGGGTCCGGGCCCGCATGGAG
ACGCTGACGCCGCAGACAGTCCTGCACGTGAGCATGGACGCCGGGAGCTC
CTGGGCCTTCCCGGTGGCCGCCAGTCATACCCTGCATGTGTACGTGAGGA
AAGGGCCGGTGGACATCTTGGTGGGGGCGGGAGAAGGACGAGGCGAGAAT
CAGGAAGGCGCCAGCCGGGAAAAGAGGAGCCCGCGTTTCGTGCGGGTGGA
GACGCATGAGACTGCCTTCACGCACAAGGGCGGGGAGCTCCTTCAAGTTC
ACTGTCCGCCCGTGGGTACCGGAGGAGGACGAGGGGGGGAAGGTGATTTC
CTAGTGCTGGCGGGGGAGCCGCTCGGCGAGCCGGTCGCGGCGTCAGGGCC
CTGGGTGTTCAATGACGCTGCGGATGCACAGCGTGCCTACGCACGCTATC
AGGCAGGTGTGTTCGGTCTCCCCTGGGGGCCCGCATTGGACGACGAAGCG
TGGAAGGCGATGTGCGACGGGAGAGGGAGGAGGTCGGGGGGGGGGGAAGG
GGAGGGTGGAGAGGCGTGA
back to top
Synonyms
Publications