EWM23134.1, cds7539 (CDS) Nannochloropsis gaditana

Overview
NameEWM23134.1
Unique Namecds7539
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:238398..239366 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23134.1
ProductPirin, C-terminal domain protein
Orig transcript idgnl|cribi|Naga_100523g1.1487.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:238398..239366 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011051RmlC_Cupin
IPR012093Pirin
IPR008778Pirin_C_dom
IPR014710RmlC-like_jellyroll
Homology
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|585104013|gb|EWM23134.1| (Pirin, C-terminal domain protein [Nannochloropsis gaditana])

HSP 1 Score: 644.425 bits (1661), Expect = 0.000e+0
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0
Query:    1 MARSPCSGSGCGCRLPNLLVRHSRSPSLPPSLPQIYGDGAAQLLTAGRGVLHEEMWDFSNGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAWKAMCDGRGRRSGGGEGEGGEA 322
            MARSPCSGSGCGCRLPNLLVRHSRSPSLPPSLPQIYGDGAAQLLTAGRGVLHEEMWDFSNGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAWKAMCDGRGRRSGGGEGEGGEA
Sbjct:    1 MARSPCSGSGCGCRLPNLLVRHSRSPSLPPSLPQIYGDGAAQLLTAGRGVLHEEMWDFSNGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAWKAMCDGRGRRSGGGEGEGGEA 322          
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|299471298|emb|CBN79124.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 132.88 bits (333), Expect = 1.477e-31
Identity = 91/278 (32.73%), Postives = 129/278 (46.40%), Query Frame = 0
Query:   32 LPQIYGDGAAQLLTAGRGVLHEEMWDFSNG---RDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSS-WAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEG-DFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAWKAM 304
            L Q YG  A Q ++AGRG+LHEEMWD  +     D+EL+QIW+NLP  LK T P +QL GE                       +  PLP A P       ++   V ++ GE     + +ET+ P ++LHV M+ G+  WA  V   H   +YVR+G + I V   EG  E  E      R P+ V   T         G+  +           RG E  DF+++  EP  E +A  G  V N   +  +AY  +  G FG+PW   L+D+ W+ +
Sbjct:  226 LKQRYGANAVQWMSAGRGILHEEMWDIKDKWEKADMELYQIWVNLPSSLKMTRPRIQLAGEG----------------------TGSPLPVAKP-------SKGTEVIVVAGELCNETSPVETMQPLSMLHVKMEVGAEPWAHHVPWGHHCLIYVRRGDLTI-VPTEEGYYEGDE-----DREPQLVSTAT--AVSLEDDGDYARFE--------NRGKEDLDFMLIEAEPTRESIATRGSMVMNTEKECDKAYRDFSEGFFGVPWDNRLNDDEWREL 458          
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|1129192736|gb|OLP97482.1| (putative ubiquitin-like-specific protease 1B [Symbiodinium microadriaticum])

HSP 1 Score: 115.161 bits (287), Expect = 1.085e-24
Identity = 85/270 (31.48%), Postives = 123/270 (45.56%), Query Frame = 0
Query:   37 GDGAAQLLTAGRGVLHEEMW---DFSNGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSE-RSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHC-PPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAW 301
             D A Q +TAG G+LHEEMW   +     D ELFQIW+NLP   K T P +Q++G +D+ ++       + L   L+E     P+P   P   AP     V VRI+ GEA GVR+ +ET +   +LHV++  G+ W +P  A+ +  +Y+RKG  + ++G                           ET   H    L +      +     +    + L+LAG PL EPVA     + N  A+   A    + G FG  W    DD  W
Sbjct:  414 ADAAVQWMTAGSGMLHEEMWRTGEALESSDQELFQIWVNLPKADKYTNPRMQMLGSSDTAESFS----ASKLGGMLTEVHERGPVPTVEP---APG----VSVRIVAGEADGVRSPIETFSDMAILHVTLQPGAVWTWPKPATWSCLLYMRKG--EAILG--------------------------DETLPVHHTATLTRAEIDEELKLAASQKEAAEVLILAGAPLQEPVAMGSNIIMNSDAELALANRDLRRGYFGPSWDHTDDDATW 644          
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|397620334|gb|EJK65666.1| (hypothetical protein THAOC_13446, partial [Thalassiosira oceanica])

HSP 1 Score: 110.153 bits (274), Expect = 6.338e-24
Identity = 81/281 (28.83%), Postives = 121/281 (43.06%), Query Frame = 0
Query:   34 QIYGDGAAQLLTAGRGVLHEEMWD-----------FSNGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASH-TLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAWK 302
            Q +G    Q L  G G+ HEEMWD                  EL+QIW+N+P   K T P   L+ +    D +  +P              PP   ++P++     T  VV     G+ +G+RA  +  T   +L V +  G++W   + ASH T  +YV+ G ++I     EG                  R+  H TA+  + G+ L V               D L+L+G P+ EPV + G  V N  ++ Q+AY  YQ+G  G+PW   L DE W+
Sbjct:  120 QRHGGNHVQWLNTGSGMQHEEMWDVFEPDEKDEGSLLQTSSQELYQIWLNVPSSQKMTSPKAHLLQKYGVKDESDKLP--------------PPY--STPIITECGVTTTVVC----GDHNGIRAPWDIPTDAAILRVELTKGATWEHSMPASHKTAIIYVKSGFIEI-----EGD-----------------RIAPHHTAYLTQDGQTLTVR--------ACDDSADILLLSGAPILEPVYSQGSMVMNSKSEIQKAYQDYQSGYMGVPWDYKLTDEEWQ 350          
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|1210530724|dbj|GAX10675.1| (uncharacterized protein FisN_14Lh185 [Fistulifera solaris])

HSP 1 Score: 100.523 bits (249), Expect = 7.795e-21
Identity = 73/259 (28.19%), Postives = 118/259 (45.56%), Query Frame = 0
Query:   35 IYGDGAAQLLTAGRGVLHEEMW--DFS-NGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSM-DAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFG 289
            + G+G  Q +TAGRG++HEE    +F+ NG  +E+ Q+W+NLP + K T+P  Q + + D P+   P+    +L  A                           RI+ GE    +    T +P  +  V +   GS    P  A H   V+VR+G V++L G G+   +  + +    +    +R++         G ++L++      T          L+L GEPL EP+AA GP+V N  A+ Q+A   Y+ G  G
Sbjct:   93 VIGEGDVQWMTAGRGIIHEEYHSKEFTKNGGTLEMCQLWVNLPKKHKMTKPRYQPITKEDIPEVPLPLNSADVLGKA---------------------------RIIAGELGDTKGAASTFSPVQMWDVQLPHVGSEIDLPFPAHHNCIVFVRRGSVEVLSGEGD---QKMKASKLGPQDVALMRLD---------GSDILRLRVVESDTA--------LLILGGEPLDEPIAAQGPFVMNTQAEIQQAIRDYREGKMG 304          
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|1210518684|dbj|GAX22560.1| (uncharacterized protein FisN_14Hh185 [Fistulifera solaris])

HSP 1 Score: 99.7525 bits (247), Expect = 3.068e-20
Identity = 74/259 (28.57%), Postives = 116/259 (44.79%), Query Frame = 0
Query:   35 IYGDGAAQLLTAGRGVLHEEMW--DFSN-GRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSM-DAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFG 289
            + G+G  Q +TAGRG++HEE    +F+  G  +E+ Q+W+NLP + K T+P  Q + + D P+ A P+    +L  A                           RI+ GE    +    T +P  +  V +   GS    P  A H   V+VR+G +++L       GE+ +     K  P+ V +   +      G ++L++      T          L+L GEPL EP+AA GP+V N  A+ Q+A   Y  G  G
Sbjct:  133 VIGEGDVQWMTAGRGIIHEEYHSKEFTKKGGTLEMCQLWVNLPKKHKMTKPRYQPIAKEDIPEVALPLNSDDVLGKA---------------------------RIIAGELGDTKGAASTFSPVQMWDVQLPHVGSEVDLPFPAHHNCIVFVRRGSIEVL------SGEDDQKMKTSKLGPQDVALMRLD------GSDMLRLRVVESDTA--------LLILGGEPLDEPIAAQGPFVMNTQAEIQQAMRDYMEGKMG 344          
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|224003679|ref|XP_002291511.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973287|gb|EED91618.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 100.523 bits (249), Expect = 4.018e-20
Identity = 81/271 (29.89%), Postives = 117/271 (43.17%), Query Frame = 0
Query:   41 AQLLTAGRGVLHEEMWDF---SNG---RDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAG--SSWAFPVAASH-TLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAWK 302
             Q LTAG G+ HEEMWD    S G      EL+QIW+NLP   K + P+ +L+ E    D + PIPE                   +P++   S     +  ++ GE +G+ A ++  T  ++L +   +   S W   +  SH T  +YV+KG + I        G+               RV  H T +    GE L +            GE D L+L G PL EP+ + G  V N   + Q AY  +Q G  G+PW   L D  W+
Sbjct:  199 VQWLTAGAGIQHEEMWDVEPDSRGGWTSSQELYQIWLNLPAAYKMSAPNAELL-EAKIVDKSVPIPE-----------------GITPIIV--SDEGNTITTVVSGEHNGIHAPVDCPTDASILRIEFTSKNQSIWKHMMPRSHKTAILYVKKGAIKI--------GDE--------------RVPPHHTVYLTPDGEELTIE--------ALEGEADVLLLTGAPLCEPIVSQGSMVMNTNQEIQEAYIDFQRGYMGVPWREKLSDYEWR 419          
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|515486802|ref|WP_016920070.1| (pirin family protein [Methylocystis parvus])

HSP 1 Score: 94.7449 bits (234), Expect = 7.757e-19
Identity = 79/256 (30.86%), Postives = 110/256 (42.97%), Query Frame = 0
Query:   37 GDGAAQLLTAGRGVLHEEMWDFSNGRD---VELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFG 289
            G G  Q +TAG GV+HEE    +  R     EL Q+W+NLP R+K T P  Q +      DAA  IP + L +                         + +VR++ GE  G +   ET TP  +  V +D G + AF     H L V V  GPV +          N EG +R   +  F R         H G  +               G+   L+L+GEP+ EPVA  GP+V N   + ++A+  Y+AG FG
Sbjct:   91 GPGDVQWMTAGAGVVHEEYHSDAFARRGGRFELVQLWVNLPARMKMTRPRYQTL-----TDAA--IPRIELRND------------------------EGLVRVVAGEYAGAKGPAETATPMNIWDVRIDEGKTAAFEPPDGHNLVVAVLDGPVVV----------NGEGHARAGETIVFER---------HGGDAIFTAQ-----------GDAKLLLLSGEPIDEPVAQQGPFVMNTPEELKQAFEDYRAGRFG 285          
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|676384281|ref|XP_009035419.1| (hypothetical protein AURANDRAFT_13698, partial [Aureococcus anophagefferens] >gi|323453467|gb|EGB09338.1| hypothetical protein AURANDRAFT_13698, partial [Aureococcus anophagefferens])

HSP 1 Score: 90.8929 bits (224), Expect = 7.639e-18
Identity = 79/263 (30.04%), Postives = 116/263 (44.11%), Query Frame = 0
Query:   32 LPQIYGDGAAQLLTAGRGVLHEEMW---DFSNGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLP 291
            + + YGDG  Q LTAG+G+LHEEMW   D S   + EL+Q+W+NLP  L  ++P+ +++   D    AG     T L  AL+   +         + AP + R+ V+                     +  V +  G+S+A  V A  T  +Y R+G V +    G+                    V  H  A+T KG   L+V      T  G     + L+L G P+ EPV +SG WV +  A+  +A A Y AG  G P
Sbjct:   29 VKETYGDGDVQWLTAGKGILHEEMWHWADKSRRGECELYQLWVNLPAALSMSKPATEVLRAADLATVAGDGVLETDLGGALTPDGA---------IRAPGAAREDVL---------------------LRKVELAPGASYARDVPADATALLYTRRGAVAV---GGDA-------------------VPRHTLAYTEKGAGALRV------TNDG-DAPAEILLLVGMPIREPVVSSGTWVVSSEAELAQANADYAAGFLGRP 232          
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|1095174436|emb|SEN28849.1| (hypothetical protein SAMN05428959_1011029 [Duganella sp. CF517])

HSP 1 Score: 92.8189 bits (229), Expect = 7.975e-18
Identity = 81/266 (30.45%), Postives = 109/266 (40.98%), Query Frame = 0
Query:   36 YGDGAAQLLTAGRGVLHEEMWDFSNGRD---VELFQIWINLPGRLKGTEPSLQLVGETDSP-----DAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARY-QAGVFGLPW 292
            +G G  Q LTAGRG++H EM+      D   +ELFQIW+NLP R K  EP   ++   D P     DAAG   EV  ++  +    + P PP S    A  S   + V                        V+M+ G+ W  P A         R       +   +G G +  G     RS   VR +T                  P     G  G+  FL+L G P+GEPV  SGP+V N   + ++A+A Y Q G  G PW
Sbjct:  101 FGAGDVQWLTAGRGIVHSEMFPLLKTEDDNPLELFQIWLNLPARSKFAEPHFTMLWSEDVPRETVVDAAGARTEVVCVAGRVGASQALPPPPDS-WAAAEDSDLAIWV------------------------VTMEPGAQWTLPPA---------RGADTKRALYYFDGDGASLGGQPLASRSVNDVRTDT------------------PWQLVNGAAGKAQFLILQGRPIGEPVVQSGPFVMNSEQEIRQAHADYRQTGFGGWPW 314          
The following BLAST results are available for this feature:
BLAST of EWM23134.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104013|gb|EWM23134.1|0.000e+0100.00Pirin, C-terminal domain protein [Nannochloropsis ... [more]
gi|299471298|emb|CBN79124.1|1.477e-3132.73conserved unknown protein [Ectocarpus siliculosus][more]
gi|1129192736|gb|OLP97482.1|1.085e-2431.48putative ubiquitin-like-specific protease 1B [Symb... [more]
gi|397620334|gb|EJK65666.1|6.338e-2428.83hypothetical protein THAOC_13446, partial [Thalass... [more]
gi|1210530724|dbj|GAX10675.1|7.795e-2128.19uncharacterized protein FisN_14Lh185 [Fistulifera ... [more]
gi|1210518684|dbj|GAX22560.1|3.068e-2028.57uncharacterized protein FisN_14Hh185 [Fistulifera ... [more]
gi|224003679|ref|XP_002291511.1|4.018e-2029.89predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|515486802|ref|WP_016920070.1|7.757e-1930.86pirin family protein [Methylocystis parvus][more]
gi|676384281|ref|XP_009035419.1|7.639e-1830.04hypothetical protein AURANDRAFT_13698, partial [Au... [more]
gi|1095174436|emb|SEN28849.1|7.975e-1830.45hypothetical protein SAMN05428959_1011029 [Duganel... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7557rna7557Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications