EWM23134.1, cds7539 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|585104013|gb|EWM23134.1| (Pirin, C-terminal domain protein [Nannochloropsis gaditana]) HSP 1 Score: 644.425 bits (1661), Expect = 0.000e+0 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0
Query: 1 MARSPCSGSGCGCRLPNLLVRHSRSPSLPPSLPQIYGDGAAQLLTAGRGVLHEEMWDFSNGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAWKAMCDGRGRRSGGGEGEGGEA 322
MARSPCSGSGCGCRLPNLLVRHSRSPSLPPSLPQIYGDGAAQLLTAGRGVLHEEMWDFSNGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAWKAMCDGRGRRSGGGEGEGGEA
Sbjct: 1 MARSPCSGSGCGCRLPNLLVRHSRSPSLPPSLPQIYGDGAAQLLTAGRGVLHEEMWDFSNGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAWKAMCDGRGRRSGGGEGEGGEA 322
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|299471298|emb|CBN79124.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 132.88 bits (333), Expect = 1.477e-31 Identity = 91/278 (32.73%), Postives = 129/278 (46.40%), Query Frame = 0
Query: 32 LPQIYGDGAAQLLTAGRGVLHEEMWDFSNG---RDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSS-WAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEG-DFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAWKAM 304
L Q YG A Q ++AGRG+LHEEMWD + D+EL+QIW+NLP LK T P +QL GE + PLP A P ++ V ++ GE + +ET+ P ++LHV M+ G+ WA V H +YVR+G + I V EG E E R P+ V T G+ + RG E DF+++ EP E +A G V N + +AY + G FG+PW L+D+ W+ +
Sbjct: 226 LKQRYGANAVQWMSAGRGILHEEMWDIKDKWEKADMELYQIWVNLPSSLKMTRPRIQLAGEG----------------------TGSPLPVAKP-------SKGTEVIVVAGELCNETSPVETMQPLSMLHVKMEVGAEPWAHHVPWGHHCLIYVRRGDLTI-VPTEEGYYEGDE-----DREPQLVSTAT--AVSLEDDGDYARFE--------NRGKEDLDFMLIEAEPTRESIATRGSMVMNTEKECDKAYRDFSEGFFGVPWDNRLNDDEWREL 458
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|1129192736|gb|OLP97482.1| (putative ubiquitin-like-specific protease 1B [Symbiodinium microadriaticum]) HSP 1 Score: 115.161 bits (287), Expect = 1.085e-24 Identity = 85/270 (31.48%), Postives = 123/270 (45.56%), Query Frame = 0
Query: 37 GDGAAQLLTAGRGVLHEEMW---DFSNGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSE-RSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHC-PPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAW 301
D A Q +TAG G+LHEEMW + D ELFQIW+NLP K T P +Q++G +D+ ++ + L L+E P+P P AP V VRI+ GEA GVR+ +ET + +LHV++ G+ W +P A+ + +Y+RKG + ++G ET H L + + + + L+LAG PL EPVA + N A+ A + G FG W DD W
Sbjct: 414 ADAAVQWMTAGSGMLHEEMWRTGEALESSDQELFQIWVNLPKADKYTNPRMQMLGSSDTAESFS----ASKLGGMLTEVHERGPVPTVEP---APG----VSVRIVAGEADGVRSPIETFSDMAILHVTLQPGAVWTWPKPATWSCLLYMRKG--EAILG--------------------------DETLPVHHTATLTRAEIDEELKLAASQKEAAEVLILAGAPLQEPVAMGSNIIMNSDAELALANRDLRRGYFGPSWDHTDDDATW 644
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|397620334|gb|EJK65666.1| (hypothetical protein THAOC_13446, partial [Thalassiosira oceanica]) HSP 1 Score: 110.153 bits (274), Expect = 6.338e-24 Identity = 81/281 (28.83%), Postives = 121/281 (43.06%), Query Frame = 0
Query: 34 QIYGDGAAQLLTAGRGVLHEEMWD-----------FSNGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASH-TLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAWK 302
Q +G Q L G G+ HEEMWD EL+QIW+N+P K T P L+ + D + +P PP ++P++ T VV G+ +G+RA + T +L V + G++W + ASH T +YV+ G ++I EG R+ H TA+ + G+ L V D L+L+G P+ EPV + G V N ++ Q+AY YQ+G G+PW L DE W+
Sbjct: 120 QRHGGNHVQWLNTGSGMQHEEMWDVFEPDEKDEGSLLQTSSQELYQIWLNVPSSQKMTSPKAHLLQKYGVKDESDKLP--------------PPY--STPIITECGVTTTVVC----GDHNGIRAPWDIPTDAAILRVELTKGATWEHSMPASHKTAIIYVKSGFIEI-----EGD-----------------RIAPHHTAYLTQDGQTLTVR--------ACDDSADILLLSGAPILEPVYSQGSMVMNSKSEIQKAYQDYQSGYMGVPWDYKLTDEEWQ 350
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|1210530724|dbj|GAX10675.1| (uncharacterized protein FisN_14Lh185 [Fistulifera solaris]) HSP 1 Score: 100.523 bits (249), Expect = 7.795e-21 Identity = 73/259 (28.19%), Postives = 118/259 (45.56%), Query Frame = 0
Query: 35 IYGDGAAQLLTAGRGVLHEEMW--DFS-NGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSM-DAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFG 289
+ G+G Q +TAGRG++HEE +F+ NG +E+ Q+W+NLP + K T+P Q + + D P+ P+ +L A RI+ GE + T +P + V + GS P A H V+VR+G V++L G G+ + + + + +R++ G ++L++ T L+L GEPL EP+AA GP+V N A+ Q+A Y+ G G
Sbjct: 93 VIGEGDVQWMTAGRGIIHEEYHSKEFTKNGGTLEMCQLWVNLPKKHKMTKPRYQPITKEDIPEVPLPLNSADVLGKA---------------------------RIIAGELGDTKGAASTFSPVQMWDVQLPHVGSEIDLPFPAHHNCIVFVRRGSVEVLSGEGD---QKMKASKLGPQDVALMRLD---------GSDILRLRVVESDTA--------LLILGGEPLDEPIAAQGPFVMNTQAEIQQAIRDYREGKMG 304
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|1210518684|dbj|GAX22560.1| (uncharacterized protein FisN_14Hh185 [Fistulifera solaris]) HSP 1 Score: 99.7525 bits (247), Expect = 3.068e-20 Identity = 74/259 (28.57%), Postives = 116/259 (44.79%), Query Frame = 0
Query: 35 IYGDGAAQLLTAGRGVLHEEMW--DFSN-GRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSM-DAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFG 289
+ G+G Q +TAGRG++HEE +F+ G +E+ Q+W+NLP + K T+P Q + + D P+ A P+ +L A RI+ GE + T +P + V + GS P A H V+VR+G +++L GE+ + K P+ V + + G ++L++ T L+L GEPL EP+AA GP+V N A+ Q+A Y G G
Sbjct: 133 VIGEGDVQWMTAGRGIIHEEYHSKEFTKKGGTLEMCQLWVNLPKKHKMTKPRYQPIAKEDIPEVALPLNSDDVLGKA---------------------------RIIAGELGDTKGAASTFSPVQMWDVQLPHVGSEVDLPFPAHHNCIVFVRRGSIEVL------SGEDDQKMKTSKLGPQDVALMRLD------GSDMLRLRVVESDTA--------LLILGGEPLDEPIAAQGPFVMNTQAEIQQAMRDYMEGKMG 344
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|224003679|ref|XP_002291511.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973287|gb|EED91618.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 100.523 bits (249), Expect = 4.018e-20 Identity = 81/271 (29.89%), Postives = 117/271 (43.17%), Query Frame = 0
Query: 41 AQLLTAGRGVLHEEMWDF---SNG---RDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAG--SSWAFPVAASH-TLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLPWGPALDDEAWK 302
Q LTAG G+ HEEMWD S G EL+QIW+NLP K + P+ +L+ E D + PIPE +P++ S + ++ GE +G+ A ++ T ++L + + S W + SH T +YV+KG + I G+ RV H T + GE L + GE D L+L G PL EP+ + G V N + Q AY +Q G G+PW L D W+
Sbjct: 199 VQWLTAGAGIQHEEMWDVEPDSRGGWTSSQELYQIWLNLPAAYKMSAPNAELL-EAKIVDKSVPIPE-----------------GITPIIV--SDEGNTITTVVSGEHNGIHAPVDCPTDASILRIEFTSKNQSIWKHMMPRSHKTAILYVKKGAIKI--------GDE--------------RVPPHHTVYLTPDGEELTIE--------ALEGEADVLLLTGAPLCEPIVSQGSMVMNTNQEIQEAYIDFQRGYMGVPWREKLSDYEWR 419
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|515486802|ref|WP_016920070.1| (pirin family protein [Methylocystis parvus]) HSP 1 Score: 94.7449 bits (234), Expect = 7.757e-19 Identity = 79/256 (30.86%), Postives = 110/256 (42.97%), Query Frame = 0
Query: 37 GDGAAQLLTAGRGVLHEEMWDFSNGRD---VELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFG 289
G G Q +TAG GV+HEE + R EL Q+W+NLP R+K T P Q + DAA IP + L + + +VR++ GE G + ET TP + V +D G + AF H L V V GPV + N EG +R + F R H G + G+ L+L+GEP+ EPVA GP+V N + ++A+ Y+AG FG
Sbjct: 91 GPGDVQWMTAGAGVVHEEYHSDAFARRGGRFELVQLWVNLPARMKMTRPRYQTL-----TDAA--IPRIELRND------------------------EGLVRVVAGEYAGAKGPAETATPMNIWDVRIDEGKTAAFEPPDGHNLVVAVLDGPVVV----------NGEGHARAGETIVFER---------HGGDAIFTAQ-----------GDAKLLLLSGEPIDEPVAQQGPFVMNTPEELKQAFEDYRAGRFG 285
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|676384281|ref|XP_009035419.1| (hypothetical protein AURANDRAFT_13698, partial [Aureococcus anophagefferens] >gi|323453467|gb|EGB09338.1| hypothetical protein AURANDRAFT_13698, partial [Aureococcus anophagefferens]) HSP 1 Score: 90.8929 bits (224), Expect = 7.639e-18 Identity = 79/263 (30.04%), Postives = 116/263 (44.11%), Query Frame = 0
Query: 32 LPQIYGDGAAQLLTAGRGVLHEEMW---DFSNGRDVELFQIWINLPGRLKGTEPSLQLVGETDSPDAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARYQAGVFGLP 291
+ + YGDG Q LTAG+G+LHEEMW D S + EL+Q+W+NLP L ++P+ +++ D AG T L AL+ + + AP + R+ V+ + V + G+S+A V A T +Y R+G V + G+ V H A+T KG L+V T G + L+L G P+ EPV +SG WV + A+ +A A Y AG G P
Sbjct: 29 VKETYGDGDVQWLTAGKGILHEEMWHWADKSRRGECELYQLWVNLPAALSMSKPATEVLRAADLATVAGDGVLETDLGGALTPDGA---------IRAPGAAREDVL---------------------LRKVELAPGASYARDVPADATALLYTRRGAVAV---GGDA-------------------VPRHTLAYTEKGAGALRV------TNDG-DAPAEILLLVGMPIREPVVSSGTWVVSSEAELAQANADYAAGFLGRP 232
BLAST of EWM23134.1 vs. NCBI_GenBank
Match: gi|1095174436|emb|SEN28849.1| (hypothetical protein SAMN05428959_1011029 [Duganella sp. CF517]) HSP 1 Score: 92.8189 bits (229), Expect = 7.975e-18 Identity = 81/266 (30.45%), Postives = 109/266 (40.98%), Query Frame = 0
Query: 36 YGDGAAQLLTAGRGVLHEEMWDFSNGRD---VELFQIWINLPGRLKGTEPSLQLVGETDSP-----DAAGPIPEVTLLSSALSERSSPPLPPASPLLPAPSSTRKVVVRILVGEAHGVRARMETLTPQTVLHVSMDAGSSWAFPVAASHTLHVYVRKGPVDILVGAGEGRGENQEGASREKRSPRFVRVETHETAFTHKGGELLQVHCPPVGTGGGRGGEGDFLVLAGEPLGEPVAASGPWVFNDAADAQRAYARY-QAGVFGLPW 292
+G G Q LTAGRG++H EM+ D +ELFQIW+NLP R K EP ++ D P DAAG EV ++ + + P PP S A S + V V+M+ G+ W P A R + +G G + G RS VR +T P G G+ FL+L G P+GEPV SGP+V N + ++A+A Y Q G G PW
Sbjct: 101 FGAGDVQWLTAGRGIVHSEMFPLLKTEDDNPLELFQIWLNLPARSKFAEPHFTMLWSEDVPRETVVDAAGARTEVVCVAGRVGASQALPPPPDS-WAAAEDSDLAIWV------------------------VTMEPGAQWTLPPA---------RGADTKRALYYFDGDGASLGGQPLASRSVNDVRTDT------------------PWQLVNGAAGKAQFLILQGRPIGEPVVQSGPFVMNSEQEIRQAHADYRQTGFGGWPW 314 The following BLAST results are available for this feature:
BLAST of EWM23134.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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