rna7555, rna7555 (mRNA) Nannochloropsis gaditana

Overview
Namerna7555
Unique Namerna7555
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length741
Alignment locationCM002472.1:231628..233124 -

Link to JBrowse

Properties
Property NameValue
Productprotein phosphatase 2c-related protein
Orig transcript idgnl|cribi|Naga_100043g45.7258.mrna
Orig protein idgnl|cribi|Naga_100043g45.7258
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:231628..233124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100043g45gene7313Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23175.1cds7537Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7555rna7555-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7555 ID=rna7555|Name=rna7555|organism=Nannochloropsis gaditana|type=mRNA|length=741bp
ATGCAGCTACAAGCTACAATGAATTCGCCGGCTGCAGCGCCCAAACCTGA
TGTGCTGCCCTCGGTTCAACCTGTGGGGGGCGTTCCCATGTCCTATCCCC
CCCCTGAAGAAGAATTTGCATTACAACACGAGCAAAATACAGAGATAGGT
AAGGACCGTTCGATAAAGCCCAGCACGCCCAGCACGCCATCAAACAGAAC
AGGAAAAAGTGCCACTGATGTCGGAAAACCAGTTGAAAAGCATGCTACGA
AGAATCGGCATCAGCAGCTTCTTGACAAGATAAACAGACTGGAGGCGGCC
TTACTCCAGGCCCAAAATCAAAACGCGACAAACGAACGATTAGCAACGCA
ACATGCACAAAGGGCTTTGTTTGCGGAAAAGGATGTGTTGCAAATGAAGC
GGGAGACGCTGACACGGACCTCTGAGTTGAAAGGACAAGGTGTGCACAGA
CAGCGCCTTGAGAAAGAAACTAAACGATTACAAGCCGCACTTAAACAAGA
CAAATCTACCCGAGAAACGAAGATGAGGCAATGTCAAATTGCCTTGGACC
AAACGGAGCGAAGGGCTAGGCATCTGGAAAAGGAGAACGCTCAGTTGCGA
GCAGCTCTTCAAAAACAGGGGGAGTTGTTGCAAGTACTCGATCGACAGGT
GGAGCACGCGCAGGCCATGCAGCTCTTTTCTATCATGGAGGAAGATTTCG
ACAATTTGGTCGTTGATCTGCGTCGCTCGGGACGGGAATGA
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protein sequence of rna7555

>rna7555-protein ID=rna7555-protein|Name=rna7555|organism=Nannochloropsis gaditana|type=polypeptide|length=372bp
MTPVLETQSCISTLSDQVPSKCRAQPEVESGVKGDRSTKSSTNSNGISRT
IQESATPSLPRETSRSDGASSPLDSSTASSLATSATAAIQSIKGTIYPAS
GTFKGVSVAEEMNPLRRSTMEDVHRVLPVFDGDACMSFVGIYDGHGGRDI
VDFLATELEKNVARELKVEDGASVPERLERAYLLTDVQSRQAELMGSGAT
AVTCLIKARREGEGEGAGETVREIYTANVGDSRAVLCHQGKGMRLTYDHK
AEDKGEQARIEAAGGFVLRSRVLGILAVTRSFGDHRMKDYVIGVPYTSTT
IVEDSTPEESPFLILACDGVWDVLSDDEAVGLVRGQWEREGRRPEVDAAG
LLVQEAMRRGSSDNITCIVVLL
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mRNA from alignment at CM002472.1:231628..233124-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7555 ID=rna7555|Name=rna7555|organism=Nannochloropsis gaditana|type=mRNA|length=1497bp|location=Sequence derived from alignment at CM002472.1:231628..233124- (Nannochloropsis gaditana)
GGCTTTGCCAAAACAGGGGGATCATGCGCACTTTGTGTGACGTTGAGATA GGGTTAGGACGACGTGACCACTGGTGTAACCTCTCACTAGACTCTTCTCT GTTTTTATTCCCTCTATCACCTGCAGCACGTCAATCGAATTTGCGAGACA TTGGCGACAAGGTTACGTCCCGCCGCACGGTCTTCGAGTCTGTGAAGAAA GCGTGCCCCCACGATGACACCTGTCCTGGAGACCCAGAGTTGCATTTCTA CGTTATCCGACCAAGTGCCTTCGAAGTGTCGTGCCCAGCCTGAGGTGGAG TCCGGTGTTAAGGGCGACAGGAGTACGAAGTCCAGCACCAATAGCAACGG CATCAGTCGAACAATTCAGGAGAGCGCCACTCCTTCTCTACCCCGGGAGA CGTCAAGATCCGATGGAGCTTCGAGCCCCTTGGACTCATCGACGGCTTCC TCCTTGGCTACCTCAGCGACGGCGGCCATTCAGTCAATTAAAGGCACCAT TTACCCCGCGAGCGGCACCTTCAAGGGAGTGAGCGTGGCGGAAGAAATGA ACCCGCTGCGGCGGAGCACCATGGAAGACGTGCACCGAGTCCTACCTGTC TTTGATGGCGATGCATGTATGAGCTTCGTGGGCATCTACGATGGGCATGG GGGGCGGGACATAGTGGATTTCCTTGCCACGGAGCTCGAAAAGAACGTGG CGCGTGAGCTTAAAGTTGAAGACGGGGCCAGCGTGCCGGAGAGACTGGAG AGGGCATATCTGTTGACGGACGTGCAATCTCGACAGGCGGAACTGATGGG TTCCGGGGCGACCGCCGTAACGTGCCTGATCAAGGCCAGGAGGGAGGGCG AGGGTGAGGGGGCGGGGGAGACCGTCCGAGAGATATACACTGCCAACGTA GGGGACAGCCGGGCCGTGCTCTGTCACCAGGGGAAGGGTATGCGCTTGAC ATACGACCACAAGGCAGAGGACAAGGGGGAGCAGGCTCGAATCGAGGCCG CCGGGGGCTTTGTCTTGCGGAGCCGCGTCTTGGGCATCCTGGCCGTGACG CGGAGCTTCGGAGACCATCGGATGAAGGACTACGTCATCGGGGTACCCTA CACGTCCACCACCATCGTGGAGGACAGTACACCCGAGGAAAGCCCTTTCT TGATTCTCGCCTGCGACGGGGTCTGGGACGTGCTCTCGGACGACGAGGCA GTGGGGCTCGTGAGGGGGCAATGGGAGAGGGAGGGCCGGAGGCCGGAGGT GGACGCGGCGGGCTTGCTAGTACAAGAGGCGATGCGAAGAGGCTCGTCGG ACAACATAACTTGCATTGTGGTGCTCTTGTGAAGACGGATAGGAAGGAGG GGGAGGGGGTTGAGGAAAGGAAAGGAGGGGAGTATGTCAAGAGCGCTTGC CGCGCCATGGAGGAGGGACCGGGGCCTACCATAGCAAAGTCAATAAATAA ACGAAAGGCTGCCTTTAACTACGAGAAGAGAAATCTCAGCAATGCCC
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Coding sequence (CDS) from alignment at CM002472.1:231628..233124-

>rna7555 ID=rna7555|Name=rna7555|organism=Nannochloropsis gaditana|type=CDS|length=1119bp|location=Sequence derived from alignment at CM002472.1:231628..233124- (Nannochloropsis gaditana)
ATGACACCTGTCCTGGAGACCCAGAGTTGCATTTCTACGTTATCCGACCA
AGTGCCTTCGAAGTGTCGTGCCCAGCCTGAGGTGGAGTCCGGTGTTAAGG
GCGACAGGAGTACGAAGTCCAGCACCAATAGCAACGGCATCAGTCGAACA
ATTCAGGAGAGCGCCACTCCTTCTCTACCCCGGGAGACGTCAAGATCCGA
TGGAGCTTCGAGCCCCTTGGACTCATCGACGGCTTCCTCCTTGGCTACCT
CAGCGACGGCGGCCATTCAGTCAATTAAAGGCACCATTTACCCCGCGAGC
GGCACCTTCAAGGGAGTGAGCGTGGCGGAAGAAATGAACCCGCTGCGGCG
GAGCACCATGGAAGACGTGCACCGAGTCCTACCTGTCTTTGATGGCGATG
CATGTATGAGCTTCGTGGGCATCTACGATGGGCATGGGGGGCGGGACATA
GTGGATTTCCTTGCCACGGAGCTCGAAAAGAACGTGGCGCGTGAGCTTAA
AGTTGAAGACGGGGCCAGCGTGCCGGAGAGACTGGAGAGGGCATATCTGT
TGACGGACGTGCAATCTCGACAGGCGGAACTGATGGGTTCCGGGGCGACC
GCCGTAACGTGCCTGATCAAGGCCAGGAGGGAGGGCGAGGGTGAGGGGGC
GGGGGAGACCGTCCGAGAGATATACACTGCCAACGTAGGGGACAGCCGGG
CCGTGCTCTGTCACCAGGGGAAGGGTATGCGCTTGACATACGACCACAAG
GCAGAGGACAAGGGGGAGCAGGCTCGAATCGAGGCCGCCGGGGGCTTTGT
CTTGCGGAGCCGCGTCTTGGGCATCCTGGCCGTGACGCGGAGCTTCGGAG
ACCATCGGATGAAGGACTACGTCATCGGGGTACCCTACACGTCCACCACC
ATCGTGGAGGACAGTACACCCGAGGAAAGCCCTTTCTTGATTCTCGCCTG
CGACGGGGTCTGGGACGTGCTCTCGGACGACGAGGCAGTGGGGCTCGTGA
GGGGGCAATGGGAGAGGGAGGGCCGGAGGCCGGAGGTGGACGCGGCGGGC
TTGCTAGTACAAGAGGCGATGCGAAGAGGCTCGTCGGACAACATAACTTG
CATTGTGGTGCTCTTGTGA
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Synonyms
Publications