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Properties
| Property Name | Value |
|---|
| Product | rna polymerase sigma factor |
| Orig transcript id | gnl|cribi|Naga_100043g41.7223.mrna |
| Orig protein id | gnl|cribi|Naga_100043g41.7223 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002472.1 | supercontig | CM002472.1:218505..221225 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7551 ID=rna7551|Name=rna7551|organism=Nannochloropsis gaditana|type=mRNA|length=1807bp
GAGTATCTTTTCGCCTGTCCGGCCGCTCCCGGGGGCTGAAGACGCCCTGG
ATGAGGGCTTGGTGGCTGGATTCGGGATGTTTTTGCGCCCACTTTTAATG
AATGCACTCGAATTGATGCAGGAGTGGTGACAGGGCCTTGGCCACGTGTC
TCGGGCTCACGGTGGGAGCATAACTATGACCAATGCTGCTACGCCCAGCC
CGTCTGCTCCCAGCGACGAGGAAGTGGGCCAAGCCGTACTCGATGCTGCT
CGATATGGAGACGTGGAAGACTTGCAAGAGCTTACGAGTACCTATGGGGG
AAACCATTTGGGGTTTCGTGGAGGGAATGGAGGCAACACGGCGCTGCACT
TTGCCTGCGCCAACGGTCACGTTGATTGCGTTGCTTGGTTAATCGACCAA
GGGGTAGAAGGATGCGCAGCGAATGAGAGCGGGAACAGTCCTTTACATTG
GGCTGTACAAAATCAGCATGAGGCTGTAGTGCGCCTTCTACTGGAGAAAC
TAGAGAATGTAGATGTCTTGGCGCGGAATGCCTTCGGGAAAAGTGTCTTG
ACGGAGGGGTTTGCTGGGAAGAGTCAGGGGATTTTGAAGCTGCTACTTGA
GCACCCATCGGCGGATGAAGATGCGCTGATGGGTGGCGAAGGACAAGGGC
AGTGTCAAGAGGGTAGCGACGGGGGAGAGGTGCTCAAAGCAGGCTTGCAA
TCGGCAAAAGAAGCAAACGAGGCCTCAGGCGGTGGTGGGGAGGCCACGGT
TATCCACCGGTTGGTATTGGACCGAGAGAACGATCCTGACAGAGTGCTTC
AGATCCGTGAGCTTGCGATCGAGCACGCAGACGATCCCTTCGGTAAGGCC
GCTGCGGACGACACCACGGGACTGGGGGTGTGGCCTGCCGCCCTAGTGCT
GGCGCAATGGCTAGTCCAGGAGCGCAAGGAGCTACTCGATGCGAGCACTA
TCGTGGAATTAGGATGTGGTTGCGCGGTGCCAGGTTTGGCAGCAGCATTG
CATGGCCGTCCCCGGGCTGTGCACCTGACGGACCTGAATTCGGAGACTCT
GATGAACGCGCGGGCCAACCTGGCCATGAATCGAGAGAATTTCTTGGTTC
CTGAGACCGCAGCGTGCGTGCATGTCTCTGCCATGGATTGGGGGGACGAG
CAATCATATCCTCCGAGCGCCGTGGGTGCTGTAGACCTGGTTTTGGGGTC
CGACCTGGTCTATCAGAAGAGCCTTGCCCCGCTTTTGGCGCAGGTGCTTT
GCCGGCTGATGAGGCCAGGAGGCCGCTTTTTGTACGTGGCCCCCGCCACT
GGACGCGATGGTCTGGAAGACTTTGTGAAAGGGCTCTCAGACAGAGCGGG
CTTGTTTCAAGTGTCGGAAAAGGAGGCGGGACCTAAGCTGTTAGGCAACC
CCTTGGAAGGGGGGGGGATGGTGGAAGGAAGCACGGGTTCCCCGCAGGAG
GAGGAGGCGGCGGACAGCGCCGATCAAATGTTTTTCCTGCACTTTAATGA
ACTGGCCACGCAGGAGGTCGTGTATAAACTCTATGAATATGTCAAGCAAT
AATCTATGTGAAATAACCGAAGCACCGAGGAAAGTTGACTTGATCCGTGT
GTTATCCTAAGAAATGAAGTATATTTTATTTTTTCGCATTACCCCCACCG
AGAAATCGATATGAGCGCAGCAGTAGCACATATTTCACGTCCAGACAAAA
CTGAACCTGTCGTCGTACAAGACATTTTGAATCTTCGAGACATGCAGGAC
GGGAAAGGACATAGCCATGTCGTCAGTGAGAATCCGAATTGGGCGAAAAT
AACTACT back to topprotein sequence of rna7551 >rna7551-protein ID=rna7551-protein|Name=rna7551|organism=Nannochloropsis gaditana|type=polypeptide|length=636bp
MSLSDEAELADNNCRSTAQQLSQAQQQPHPQTSGITPADSSSGFSSKRQR
HKGMKRILILGACCLVTLASCGSVSSFVVPNHGLAGSSISNARRTSLPSS
IYHPPNFRTVLEQQRIGEASPFLFSLASTQSNNPAIGATNDPASNTGPMS
AAAAAAAAAVTATATTAPGPISAMPTGGMSPRGRPGKDGVPLNPPNKGSG
KAPLRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISD
RALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGL
TRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQ
IGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRP
SGGRKSGSGIGDEVRVSDSISDAEPLQDVKADEAYMREQVERLLDSLNPR
EADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRV
NHHKLRDNGRGGGSSAGGKGSSQGHSGSHLSISVFGDFVGVVEKGGGLHS
GGVLAVEEEVMRGSGGAKQTAVSKNKEGAGSRGKYRKRGVLGARDEEEGL
LVGVGARRGRGRGVGAASKMVPSMMSSHNETLAAFP back to topmRNA from alignment at CM002472.1:218505..221225+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7551 ID=rna7551|Name=rna7551|organism=Nannochloropsis gaditana|type=mRNA|length=2721bp|location=Sequence derived from alignment at CM002472.1:218505..221225+ (Nannochloropsis gaditana)
GCTTAGCCAGCCACACgaccgcgaggagggagcccTCAAGGAGCGCCCAC
AGGAGAGCCTCTCATGCGGACGCCAGCGTGTCTAGTCGACGGTCAACGTC
TCTTGTGTTCACCGAATGCGGTCTCTAGACACTAGCTGTGCATGTAATTG
ATGTTCATGGGATTCTTCATTTGTTGTACCGAAGTGTTTGTACGGGAAGG
GGTTGCTGTCTAAGCCGCTGTCTCGGAGCTTCTTCGTGGCCACCTACTAA
ACATCAAccccccccattccctcaaTACCAGTGGATTTCGGCCGCGCCTA
CCGCGCGCTGGGTAGACAGACGACAAACAACCACACTCAAGGAAGGAAGT
CAGCGCAATTGACGTTAAATGAGTCTATCAGACGAAGCAGAGCTGGCCGA
CAACAATTGCAGATCGACAGCACAGCAACTCAGCCAGGCCCAACAGCAAC
CACATCCTCAGACCAGTGGCATCACTCCCGCGGACAGTTCCTCGGGTTTC
AGCAGTAAAAGACAAAGACACAAAGGAATGAAGAGAATATTAATCTTGGG
GGCCTGTTGTCTCGTGACTTTGGCCTCCTGCGGCAGTGTGTCTTCCTTCG
TGGTGCCCAATCATGGCCTTGCAGGGAGTAGCATTTCCAACGCAAGGCGC
ACGTCATTACCGAGCAGTATCTACCATCCTCCAAATTTCCGCACCGTCCT
GGAACAACAGAGAATAGGTGAAGCTTCACCTTTCTTGTTTTCCCTCGCCT
CTACGCAGAGCAACAACCCTGCGATCGGCGCCACAAACGATCCTGCTTCC
AACACGGGACCCAtgtccgccgccgccgccgcagcggcagcagcagtcac
TGCCACAGCTACGACTGCTCCAGGCCCTATTTCGGCAATGCCGACCGGAG
GTATGTCCCCGCGGGGCCGACCTGGCAAGGACGGTGTGCCCCTCAACCCC
CCCAATAAGGGGTCAGGCAAAGCCCCTCTgcgcggcgaggaggaggtaga
ttTGGCCCGAAAGATGCAGGTACGCGTGGCGTACATTCGCGTCAAATACC
TGGCGCGGGAAGCGCTGGGCCGTGACCCGACCCACCGGGAGTGGGCGGAC
GTGTTGGGTATCTCGGACAGGGCACTGGCCGAGGCCTTGACGGCGGCTGC
GGATGCGAAGACCACCATGATCCGCGCCAACATGCGTCTGGTCATGTCCA
TCGTGCGCCGGTACCTCTCGCGCGGCGTGCAGCTCAAAGACCTGCTGCAG
GAGGGCATGAACGGTCTGACCCGGGCCGCCGAGAAGTTCGACCCCGACCG
CGGCTTCAAGTTCTCCACCTACGCGACCTGGTGGATCAAACAGTCCGTCA
TGCGGGCTGTGGCCGACCAGTCCCGGGTCGTGCGCCTCCCCGTGCACGTA
CACGACCTCCTGAACCAGATCGGGAGGGCGGAGCGGGAGTTGTCCTCGCA
GCTGGGTCGGCAGCCGACGGAGGCAGAGATCGCAGCCAGGGTGGACATCC
CGCAGCGGAAATTACAATTTTTGCGCGAACGCACCCAGCACACTCTTTCC
ATGGACGCCACCCGGCCTTCGGGCGGGCGGAAGTCGGGTTCTGGGATCGG
CGACGAGGTACGTGTCTCGGACAGCATCTCGGACGCGGAGCCCCTGCAGG
ACGtgaaggcggacgaggcctACATGCGAGAGCAGGTGGAGCGCCTCCTC
GACTCGCTGAACCCTCGAGAGGCCGACGTGGTGAAGATGCGCTACGGCCT
GGTCGACGGGCAGCAGCGGaccctggaggagatcgGGGTCGCGTTCAGGG
TCACGCGGGAGAGGGTGCGCCAGATCGAGGCGCGGGCGCTGCACAAGATC
AAACAGCCGTACAGGGTGAACCATCACAAACTCCGAGACaatgggcgagg
cggcggtTCCtctgcgggagggaaagggagcagcCAGGGACACAGTGGGA
GCCACTTGTCCATCTCGGTCTTTGGAGACTTTgtgggcgtggtggagaag
ggcggcGGGCTGCACAGCGGAGGGGtgctggcggtggaggaggaggtaat
gcgggggagcgggggagcgAAGCAGACGGCCGTGAgcaagaacaaggagg
gCGCCGGATCGAGGGGAAAGTATCGCAAGAGGGGTGTGTTGGGCGCtcga
gatgaggaggaagggctgttggtcggggtgggggcgcgacgagggagagg
caggggagtCGGCGCCGCCTCCAAAATGGTGCCAAGCATGATGTCCTCGC
ACAACGAGACGCTTGCCGCCTTTCCATAGCGGAGGAccggaaagggggaa
ggaaagtgaaCTCAGATTGGGGGAACGAATCGGAGTGAGATGGTGCTATT
CTGGCAACCCCGTACATAGTATGAGCAGGTAAAGACTTGGTTCCTAAATG
TAGGGAAataggtggggagggtgcttATCCCGCGATATAGTTTGCCGTTG
GGGGGTACCATGAACAAAAGGACGGCTCGATAATGTCTGCGCATAAGGAC
TCAATGAAGTCtgcagagaaagaaaaagggctTGGCGACATCGTCAACAA
TAACACGTAGAAAAAGCTTGTGGGCACTTCGAATGTTATCACAcaagcgg
ggggaaagggatgtaGTCTGGGTTGGTTTTAAGAAAGGCCCATCCTTACC
TTCATTACGATAGAATCGAATTAAGTGGACAACGAACAAGGTTGTGGCCA
ATGAATAAAAATCGTGTTTCT back to topCoding sequence (CDS) from alignment at CM002472.1:218505..221225+ >rna7551 ID=rna7551|Name=rna7551|organism=Nannochloropsis gaditana|type=CDS|length=1911bp|location=Sequence derived from alignment at CM002472.1:218505..221225+ (Nannochloropsis gaditana)
ATGAGTCTATCAGACGAAGCAGAGCTGGCCGACAACAATTGCAGATCGAC
AGCACAGCAACTCAGCCAGGCCCAACAGCAACCACATCCTCAGACCAGTG
GCATCACTCCCGCGGACAGTTCCTCGGGTTTCAGCAGTAAAAGACAAAGA
CACAAAGGAATGAAGAGAATATTAATCTTGGGGGCCTGTTGTCTCGTGAC
TTTGGCCTCCTGCGGCAGTGTGTCTTCCTTCGTGGTGCCCAATCATGGCC
TTGCAGGGAGTAGCATTTCCAACGCAAGGCGCACGTCATTACCGAGCAGT
ATCTACCATCCTCCAAATTTCCGCACCGTCCTGGAACAACAGAGAATAGG
TGAAGCTTCACCTTTCTTGTTTTCCCTCGCCTCTACGCAGAGCAACAACC
CTGCGATCGGCGCCACAAACGATCCTGCTTCCAACACGGGACCCAtgtcc
gccgccgccgccgcagcggcagcagcagtcacTGCCACAGCTACGACTGC
TCCAGGCCCTATTTCGGCAATGCCGACCGGAGGTATGTCCCCGCGGGGCC
GACCTGGCAAGGACGGTGTGCCCCTCAACCCCCCCAATAAGGGGTCAGGC
AAAGCCCCTCTgcgcggcgaggaggaggtagattTGGCCCGAAAGATGCA
GGTACGCGTGGCGTACATTCGCGTCAAATACCTGGCGCGGGAAGCGCTGG
GCCGTGACCCGACCCACCGGGAGTGGGCGGACGTGTTGGGTATCTCGGAC
AGGGCACTGGCCGAGGCCTTGACGGCGGCTGCGGATGCGAAGACCACCAT
GATCCGCGCCAACATGCGTCTGGTCATGTCCATCGTGCGCCGGTACCTCT
CGCGCGGCGTGCAGCTCAAAGACCTGCTGCAGGAGGGCATGAACGGTCTG
ACCCGGGCCGCCGAGAAGTTCGACCCCGACCGCGGCTTCAAGTTCTCCAC
CTACGCGACCTGGTGGATCAAACAGTCCGTCATGCGGGCTGTGGCCGACC
AGTCCCGGGTCGTGCGCCTCCCCGTGCACGTACACGACCTCCTGAACCAG
ATCGGGAGGGCGGAGCGGGAGTTGTCCTCGCAGCTGGGTCGGCAGCCGAC
GGAGGCAGAGATCGCAGCCAGGGTGGACATCCCGCAGCGGAAATTACAAT
TTTTGCGCGAACGCACCCAGCACACTCTTTCCATGGACGCCACCCGGCCT
TCGGGCGGGCGGAAGTCGGGTTCTGGGATCGGCGACGAGGTACGTGTCTC
GGACAGCATCTCGGACGCGGAGCCCCTGCAGGACGtgaaggcggacgagg
cctACATGCGAGAGCAGGTGGAGCGCCTCCTCGACTCGCTGAACCCTCGA
GAGGCCGACGTGGTGAAGATGCGCTACGGCCTGGTCGACGGGCAGCAGCG
GaccctggaggagatcgGGGTCGCGTTCAGGGTCACGCGGGAGAGGGTGC
GCCAGATCGAGGCGCGGGCGCTGCACAAGATCAAACAGCCGTACAGGGTG
AACCATCACAAACTCCGAGACaatgggcgaggcggcggtTCCtctgcggg
agggaaagggagcagcCAGGGACACAGTGGGAGCCACTTGTCCATCTCGG
TCTTTGGAGACTTTgtgggcgtggtggagaagggcggcGGGCTGCACAGC
GGAGGGGtgctggcggtggaggaggaggtaatgcgggggagcgggggagc
gAAGCAGACGGCCGTGAgcaagaacaaggagggCGCCGGATCGAGGGGAA
AGTATCGCAAGAGGGGTGTGTTGGGCGCtcgagatgaggaggaagggctg
ttggtcggggtgggggcgcgacgagggagaggcaggggagtCGGCGCCGC
CTCCAAAATGGTGCCAAGCATGATGTCCTCGCACAACGAGACGCTTGCCG
CCTTTCCATAG back to top
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