EWM23140.1, cds7533 (CDS) Nannochloropsis gaditana

Overview
NameEWM23140.1
Unique Namecds7533
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:218873..220783 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23140.1
Productrna polymerase sigma factor
Orig transcript idgnl|cribi|Naga_100043g41.7223.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:218873..220783 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006352DNA-templated transcription, initiation
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016987sigma factor activity
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR013325RNA_pol_sigma_r2
IPR013324RNA_pol_sigma_r3_r4
IPR007627RNA_pol_sigma70_r2
IPR007630RNA_pol_sigma70_r4
IPR007624RNA_pol_sigma70_r3
IPR011991WHTH_DNA-bd_dom
IPR014284RNA_pol_sigma-70_dom
IPR000943RNA_pol_sigma70
Homology
BLAST of EWM23140.1 vs. NCBI_GenBank
Match: gi|585104021|gb|EWM23140.1| (rna polymerase sigma factor [Nannochloropsis gaditana])

HSP 1 Score: 1296.18 bits (3353), Expect = 0.000e+0
Identity = 636/636 (100.00%), Postives = 636/636 (100.00%), Query Frame = 0
Query:    1 MSLSDEAELADNNCRSTAQQLSQAQQQPHPQTSGITPADSSSGFSSKRQRHKGMKRILILGACCLVTLASCGSVSSFVVPNHGLAGSSISNARRTSLPSSIYHPPNFRTVLEQQRIGEASPFLFSLASTQSNNPAIGATNDPASNTGPMSAAAAAAAAAVTATATTAPGPISAMPTGGMSPRGRPGKDGVPLNPPNKGSGKAPLRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISDRALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDAEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRVNHHKLRDNGRGGGSSAGGKGSSQGHSGSHLSISVFGDFVGVVEKGGGLHSGGVLAVEEEVMRGSGGAKQTAVSKNKEGAGSRGKYRKRGVLGARDEEEGLLVGVGARRGRGRGVGAASKMVPSMMSSHNETLAAFP 636
            MSLSDEAELADNNCRSTAQQLSQAQQQPHPQTSGITPADSSSGFSSKRQRHKGMKRILILGACCLVTLASCGSVSSFVVPNHGLAGSSISNARRTSLPSSIYHPPNFRTVLEQQRIGEASPFLFSLASTQSNNPAIGATNDPASNTGPMSAAAAAAAAAVTATATTAPGPISAMPTGGMSPRGRPGKDGVPLNPPNKGSGKAPLRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISDRALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDAEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRVNHHKLRDNGRGGGSSAGGKGSSQGHSGSHLSISVFGDFVGVVEKGGGLHSGGVLAVEEEVMRGSGGAKQTAVSKNKEGAGSRGKYRKRGVLGARDEEEGLLVGVGARRGRGRGVGAASKMVPSMMSSHNETLAAFP
Sbjct:    1 MSLSDEAELADNNCRSTAQQLSQAQQQPHPQTSGITPADSSSGFSSKRQRHKGMKRILILGACCLVTLASCGSVSSFVVPNHGLAGSSISNARRTSLPSSIYHPPNFRTVLEQQRIGEASPFLFSLASTQSNNPAIGATNDPASNTGPMSAAAAAAAAAVTATATTAPGPISAMPTGGMSPRGRPGKDGVPLNPPNKGSGKAPLRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISDRALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDAEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRVNHHKLRDNGRGGGSSAGGKGSSQGHSGSHLSISVFGDFVGVVEKGGGLHSGGVLAVEEEVMRGSGGAKQTAVSKNKEGAGSRGKYRKRGVLGARDEEEGLLVGVGARRGRGRGVGAASKMVPSMMSSHNETLAAFP 636          
BLAST of EWM23140.1 vs. NCBI_GenBank
Match: gi|676385791|ref|XP_009036174.1| (hypothetical protein AURANDRAFT_53467 [Aureococcus anophagefferens] >gi|323453176|gb|EGB09048.1| hypothetical protein AURANDRAFT_53467 [Aureococcus anophagefferens])

HSP 1 Score: 287.345 bits (734), Expect = 1.676e-86
Identity = 157/335 (46.87%), Postives = 218/335 (65.07%), Query Frame = 0
Query:  177 GGMSPRGRPGKDGVPLNPPNKGSGKAPLRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISDRA-----LAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGR---KSGSGIGDEVRVSDSISDAEPLQDVKADEAYMREQVERLL-DSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRVNH 502
            G +S + R   +G+     N G   A L  +EE  LAR++Q    +  ++     +LGR+PT  EW     IS  A       +A      AK  MI AN+RLV+SI +RY  RG+  +D++QEG  GLTRA EKFDP++GFKFSTYATWWIKQ+VMRA+ADQSR +RLPVHVHD L  + +  R+L ++LGR+ T+ E+A ++D+   K+ +LR   + T+SMDAT    G+       G G+E ++SD+++DA  L D +A+   ++  +  LL  +L+ RE DVV++R+GL DG+ RTLEEIG  F +TRERVRQIEARALHK++QPYR NH
Sbjct:  125 GAVSYKDR--DEGLHWQIRNMGQ-TALLSSDEEKALARRVQRLCTWEGIRANLTASLGREPTELEWGAAARISRAACENGSFEKARKKCLKAKAAMINANLRLVVSISKRYQHRGLHFQDVIQEGTFGLTRAVEKFDPEKGFKFSTYATWWIKQAVMRAIADQSRTIRLPVHVHDQLQSMKKVTRDLGAELGRECTDEELAGKLDLATTKMDWLRSCERQTMSMDATVRVSGKGSSAGTGGAGNEAKLSDNLADAAALPDERAETKSLQSDIHGLLRTALSDRECDVVRLRFGLDDGKARTLEEIGTVFSITRERVRQIEARALHKLRQPYR-NH 455          
BLAST of EWM23140.1 vs. NCBI_GenBank
Match: gi|330040254|ref|XP_003239821.1| (RNA-polymerase sigma factor [Cryptomonas paramecium] >gi|327206746|gb|AEA38923.1| RNA-polymerase sigma factor (nucleomorph) [Cryptomonas paramecium])

HSP 1 Score: 273.863 bits (699), Expect = 5.267e-82
Identity = 143/297 (48.15%), Postives = 200/297 (67.34%), Query Frame = 0
Query:  204 LRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISD-RALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDAEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYR 499
            L+ EEE+ LAR++   + +  +K   +E LGR+PT  EW+    ISD +     L  +  AK  MI AN+RLV+SI +RY +RG+ L+DL+QEG  GL RA EKFD ++GFKFSTYATWWIKQSV RA+AD SR +RLPVH++D L+ I +  R L+ +LGR PTE EIA ++D+   KL+ + +  Q TLS++        K     GD  ++SD I   +   D   +++ +R+ +  +++SL+ RE DV++MRYGL DG+ RTLEEIG  F VTRERVRQIEA+A+ K++QPYR
Sbjct:   99 LKPEEEIQLAREISQLLQWEHIKVFLKEKLGREPTALEWSAACKISDVQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLVQEGSLGLIRATEKFDSEKGFKFSTYATWWIKQSVSRAIADHSRTIRLPVHLYDTLSAIKKTTRILTIELGRSPTEEEIACKMDVTVDKLRSVLQSAQPTLSLE--------KPIKNDGDTAQLSDFIEADQESPDEHVEKSMLRDDLRDVINSLSLRERDVIRMRYGLDDGKIRTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYR 387          
BLAST of EWM23140.1 vs. NCBI_GenBank
Match: gi|162605994|ref|XP_001713512.1| (RNA-polymerase sigma factor [Guillardia theta] >gi|13794432|gb|AAK39807.1|AF165818_15 RNA-polymerase sigma factor (nucleomorph) [Guillardia theta])

HSP 1 Score: 274.633 bits (701), Expect = 9.529e-82
Identity = 142/297 (47.81%), Postives = 204/297 (68.69%), Query Frame = 0
Query:  204 LRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISD-RALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDAEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYR 499
            LR +EE+ LAR++   + +  VK   R+ L R+PT+ EW     +SD R     L  A  AK  M+ AN+RLV+SI +RY++RG+ L+DL+QEG  GL RAAEKFD ++GFKFSTYATWW+KQ+V RA+AD SR +RLPVH++D ++ I +  R L+ ++GR PTE EIA R+D+   KL+ + +  Q TLS++  RP       S + D +      +D E  ++   +++ +R+ +E +++SL+PRE DVV+MRYGL DG+ +TLEEIG  F VTRERVRQIEA+A+ K++QPYR
Sbjct:  128 LRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACKVSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTEEEIAKRMDMSVEKLRNVLQSAQPTLSLE--RPLKNDDDTSQLSDFIE-----ADQESPEE-HVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYR 416          
BLAST of EWM23140.1 vs. NCBI_GenBank
Match: gi|19910022|dbj|BAB87262.1| (RNA polymerase sigma factor [Guillardia theta])

HSP 1 Score: 274.248 bits (700), Expect = 2.676e-81
Identity = 142/297 (47.81%), Postives = 203/297 (68.35%), Query Frame = 0
Query:  204 LRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISD-RALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDAEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYR 499
            LR EEE+ LAR++   + +  VK   RE L R+PT  EW     +SD +     L  A  AK  M+ AN+RLV+SI +RY++RG+ L+DL+QEG  GL RAAEKFD ++GFKFSTYATWW+KQ+V RA+AD SR +RLPVH++D ++ I +  R L+ ++GR PTE EIA ++D+   KL+ + +  Q TLS++  RP       S + D +      +D E  ++   +++ +R+ +E +++SL+PRE DVV+MRYGL DG+ +TLEEIG  F VTRERVRQIEA+A+ K++QPYR
Sbjct:  145 LRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLE--RPLKNDDDASQLSDFIE-----ADQESPEE-HVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYR 433          
BLAST of EWM23140.1 vs. NCBI_GenBank
Match: gi|399950016|gb|AFP65672.1| (RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168])

HSP 1 Score: 274.248 bits (700), Expect = 2.706e-81
Identity = 142/297 (47.81%), Postives = 203/297 (68.35%), Query Frame = 0
Query:  204 LRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISD-RALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDAEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYR 499
            LR EEE+ LAR++   + +  VK   RE L R+PT  EW     +SD +     L  A  AK  M+ AN+RLV+SI +RY++RG+ L+DL+QEG  GL RAAEKFD ++GFKFSTYATWW+KQ+V RA+AD SR +RLPVH++D ++ I +  R L+ ++GR PTE EIA ++D+   KL+ + +  Q TLS++  RP       S + D +      +D E  ++   +++ +R+ +E +++SL+PRE DVV+MRYGL DG+ +TLEEIG  F VTRERVRQIEA+A+ K++QPYR
Sbjct:  148 LRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLE--RPLKNDDDASQLSDFIE-----ADQESPEE-HVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYR 436          
BLAST of EWM23140.1 vs. NCBI_GenBank
Match: gi|299472559|emb|CBN79861.1| (chloroplast RNA-polymerase sigma factor precursor [Ectocarpus siliculosus])

HSP 1 Score: 280.026 bits (715), Expect = 2.818e-81
Identity = 142/304 (46.71%), Postives = 207/304 (68.09%), Query Frame = 0
Query:  204 LRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISDRALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDAEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRVNHHKLRD 507
            L+  EE+ L R++Q  V+Y   +   +   G +P+  EWA  LG+    L + L+ A+ AK  M+ AN+RLV+S+ +RY  + +  +DL+QEG  GL +AAEKFDP+RGFKFSTYATWWIKQS+MR +ADQSR++RLPVHVHD LN++ +A  E++ + G+ PT+ E+A  +++   ++Q+ R+  Q TLSM+A R    + S S  G +V +   +S  E   D +A    M+++V  LL +L+ RE +VVK R+GL     RTLEE+G  FR+TRERVRQIEARALHK++QPYR  ++++RD
Sbjct:   64 LKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSP-GKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYR--NYRVRD 364          
BLAST of EWM23140.1 vs. NCBI_GenBank
Match: gi|160331013|ref|XP_001712214.1| (rpoD [Hemiselmis andersenii] >gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii])

HSP 1 Score: 273.863 bits (699), Expect = 3.835e-81
Identity = 142/297 (47.81%), Postives = 203/297 (68.35%), Query Frame = 0
Query:  204 LRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISD-RALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDAEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYR 499
            LR EEE+ LAR++   + +  VK   RE L R+PT  EW     +SD +     L  A  AK  M+ AN+RLV+SI +RY++RG+ L+DL+QEG  GL RAAEKFD ++GFKFSTYATWW+KQ+V RA+AD SR +RLPVH++D ++ I +  R L+ ++GR PTE EIA ++D+   KL+ + +  Q TLS++  RP       S + D +      +D E  ++   +++ +R+ +E +++SL+PRE DVV+MRYGL DG+ +TLEEIG  F VTRERVRQIEA+A+ K++QPYR
Sbjct:  145 LRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLE--RPLKNDDDASQLSDFIE-----ADQESPEE-HVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYR 433          
BLAST of EWM23140.1 vs. NCBI_GenBank
Match: gi|223998999|ref|XP_002289172.1| (RNA polymerase, partial [Thalassiosira pseudonana CCMP1335] >gi|220974380|gb|EED92709.1| RNA polymerase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 266.159 bits (679), Expect = 2.809e-80
Identity = 137/302 (45.36%), Postives = 206/302 (68.21%), Query Frame = 0
Query:  204 LRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVL--GISDRALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATR-PSGGRKSGSGIGDEVRVSDSISDAEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRVNH 502
            L+  EE+ LAR++Q+ + +  V+      L R PT++EWA+ +  G++   + + +  +  AK  +  +N+RLV+SI +RY  RG+ ++DL QEG  GLTRA EKFDP+RGF+FSTYATWWIKQ +MRA+ADQ+R +RLPVH+HD L+ + +AER+L ++LGR  T+ E+AA+V +   K++FL+  +  ++SM+     SG  +S +       + D++ D +      A    +++ V RL+ +LN RE  V++MR+GL DG+ +TLEEIG  F VTRER+RQIEARALHK++QPYR NH
Sbjct:   16 LQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEPGMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLSIVRKAERDLQNELGRDATKEEVAAKVGMKPDKIEFLKRASVGSISMEQELGTSGSERSFT-------IQDTLGDPDQKPVDMAQYRMLQDDVGRLICTLNAREQAVIRMRFGLDDGKAKTLEEIGKKFSVTRERIRQIEARALHKLRQPYR-NH 309          
BLAST of EWM23140.1 vs. NCBI_GenBank
Match: gi|1210528642|dbj|GAX12839.1| (RNA polymerase primary sigma factor [Fistulifera solaris])

HSP 1 Score: 265.774 bits (678), Expect = 3.092e-80
Identity = 135/303 (44.55%), Postives = 206/303 (67.99%), Query Frame = 0
Query:  204 LRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVL--GISDRALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSM-DATRPSGGRKSGSGIGDE-VRVSDSISDAEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRVNH 502
            L   EE+ LAR++Q+ + +  V+      L R PT++EWA+ +  G++   L + +  +  AK  +  +N+RLV+SI ++Y  RG+  +DL QEG+ GLTRA EKFDP+RGF+FSTYA+WWIKQ +MRA+AD  R++RLPVH+HD +N + + ERE++ +LGR PT  E+A + ++   K++FL   TQ ++S+ +  R S  + S +G+G   + + D + D E     +A    +++ + RL+ +LN RE  V++MR+GL DG+ +TL+EIG  F VTRER+RQIEARALHK++QPYR NH
Sbjct:    7 LNRNEEIVLAREIQILMKWEAVREQLETDLLRPPTYQEWANQIEPGMTVADLKKQIRRSLRAKAALTESNIRLVVSIAKKYGRRGLSFQDLAQEGILGLTRACEKFDPERGFRFSTYASWWIKQGIMRAIADHGRMIRLPVHIHDQMNAVRKLEREMTVELGRAPTPKEVAEKSNLTLEKIEFLNRVTQESISINEEVRSSKTKGSSAGLGGTGLSLEDIMGDPESQPVEQATYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKCKTLDEIGRKFSVTRERIRQIEARALHKLRQPYR-NH 308          
The following BLAST results are available for this feature:
BLAST of EWM23140.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104021|gb|EWM23140.1|0.000e+0100.00rna polymerase sigma factor [Nannochloropsis gadit... [more]
gi|676385791|ref|XP_009036174.1|1.676e-8646.87hypothetical protein AURANDRAFT_53467 [Aureococcus... [more]
gi|330040254|ref|XP_003239821.1|5.267e-8248.15RNA-polymerase sigma factor [Cryptomonas parameciu... [more]
gi|162605994|ref|XP_001713512.1|9.529e-8247.81RNA-polymerase sigma factor [Guillardia theta] >gi... [more]
gi|19910022|dbj|BAB87262.1|2.676e-8147.81RNA polymerase sigma factor [Guillardia theta][more]
gi|399950016|gb|AFP65672.1|2.706e-8147.81RNA-polymerase sigma factor [Chroomonas mesostigma... [more]
gi|299472559|emb|CBN79861.1|2.818e-8146.71chloroplast RNA-polymerase sigma factor precursor ... [more]
gi|160331013|ref|XP_001712214.1|3.835e-8147.81rpoD [Hemiselmis andersenii] >gi|159765661|gb|ABW9... [more]
gi|223998999|ref|XP_002289172.1|2.809e-8045.36RNA polymerase, partial [Thalassiosira pseudonana ... [more]
gi|1210528642|dbj|GAX12839.1|3.092e-8044.55RNA polymerase primary sigma factor [Fistulifera s... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7551rna7551Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications