rna7541, rna7541 (mRNA) Nannochloropsis gaditana

Overview
Namerna7541
Unique Namerna7541
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1108
Alignment locationCM002472.1:196234..197344 +

Link to JBrowse

Properties
Property NameValue
ProductYbaB-like DNA-binding protein
Orig transcript idgnl|cribi|Naga_100043g30.7249.mrna
Orig protein idgnl|cribi|Naga_100043g30.7249
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:196234..197344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100043g30gene7300Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7541rna7541-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23166.1cds7523Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7541 ID=rna7541|Name=rna7541|organism=Nannochloropsis gaditana|type=mRNA|length=1108bp
GGATGCATTGCTTTCTCTCTCCACCTGCACCACCCCGGTTTACGGAGTCA
TTCGCAGTCCTCACGTCGACAAATCGTGTTTCAAAGTCACGTAAGTGACA
TCATGTCGTCATCACGCCAATTTTTATGGCTCACAAGGGAAATAGTATGG
TGCAGGGGAAAGTATCTTACTCTTACATCAACTAAGCAATCACCTTGCCA
GTGGTGCTACACTTTCCTGTGTCACATGTCTCTTTTCTCTATACCGCCAG
GATCCCCTAAGTTGACAGACACTTTTCGTCCAGCTATGCGCATTTTAATG
TTTTTGGCCTTTAGCATGGCCTCTTTCGCTTCGGCTTTTATGGTGCCCAC
AAGCGGGCGGGCCTTCACCTCGATTTCCCACCCTACAATGGCTCCATCCG
TCTCCCGCGGCGATGCCAAGGGTCGGATTTTTATGCTGTTTGGTGGTAGT
GACAAGAAAAAAAAGGAGGAAAGCGCAGCCGGCAAGTCGAGCAGCAAACT
CAACCCTTTCGATGCCATGTCTAAGATGAACGAGCTGGCCACCAAAAGTA
ATACTCTAACTAAGGATCTGGCAGGAACCATTGTCTCGGGGGAAGCCATG
GACGGAAAGGTAAAAGTCACTTTTACTGGCACCCAAGTGCCTATGGAAGT
TGAAATTGCTGAGGACGCGCTCGGTGCAGGCGCGGCCGCCCTTTCAGCGG
CTCTGACAGAAGCGATGAAGGAGGGCCATTCAAAATCCGTGCAGCTCCAG
CAATCCAAACTCACCGCCTTCTACGATGAGCTAGGTTTAGGGGCCGCAAT
GAAAGAGATGGGGAAGGGCATGGGCGGTGGACAGTAAAAATGACCAGGGG
AGTCCACAAAAAAAGGCAGCACGCAATCGGAGTAACCCAAACAAATTTCA
AATAAGGTCTGTGTGCGAGGATCGTGCTTTTACAGAAGGCTAACCATTTC
AAAAGGTCAAAGTCTGAAAAAGAAGAGACAAATTTTGCACGCCTGCTGAC
TGCAAGAAAAGATGGAAAGAGACTTAACCAACAAGTTAACTACGCAGAGC
GCTGCCCGCCTCTGCAACTGAGAGGCCTTTCAATCAAGATGTTTCTCATG
CTTCGTTC
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protein sequence of rna7541

>rna7541-protein ID=rna7541-protein|Name=rna7541|organism=Nannochloropsis gaditana|type=polypeptide|length=328bp
MRRNDCMWLVPIIVMTNTTLCSAFLLPRPSCKVLRTQVWSTVTDRSPSSV
TSSSASGTLAPVLPGMAEDELDDPNEYYEPEPVDPTVDELKALGAEELAT
VLPGSDGKTIGQWLEEDRPVFSDGSLVGEWVKEAHRLRLLPFMERAEFLK
AKSFDDLNVFRARQVAWREMLEAKGVLEPYQGMPETGVTELSPEAHAAKQ
ARAQEQYTADMINHEEALLESVDVLCRNARFEGLAADNKVRVVMNGRMEP
QEVEVLEGAPLGDARLLALAVEAAMDAAYKQSAEFYEETITTEYLAQAET
PTDVEGIVEALARKEFVIDEHVVDPTML
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mRNA from alignment at CM002472.1:196234..197344+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7541 ID=rna7541|Name=rna7541|organism=Nannochloropsis gaditana|type=mRNA|length=1111bp|location=Sequence derived from alignment at CM002472.1:196234..197344+ (Nannochloropsis gaditana)
ATGAGGAGAAATGATTGCATGTGGCTAGTGCCCATAATTGTTATGACCAA
CACTACCTTATGCTCTGCTTTCTTGCTTCCACGACCGTCATGCAAGGTTT
TACGAACTCAGGTACGTGTGGtcgagtggagggaaggtgtCGAGGCAGTA
TCTTGCTTTGCTGTTCCGCTTCTGGTTCCACTCTGCCTGGAAACATACAA
ACTCCTCATTATAAATGCATAATCTGACCAAATAGGTATGGAGCACTGTG
ACGGATAGGTCACCGTCCTCTGTGACCTCCTCGAGCGCTAGCGGGACCTT
AGCCCCTGTCCTACCGGGTATGGCGGAAGATGAACTCGATGATCCCAACG
AATACTACGAGCCTGAGCCCGTGGACCCCACTGTAGACGAGCTCAAGGCA
CTGGGtgcggaggagctggcgacGGTGCTTCCCGGCTCTGATGGGAAAAC
GATAGGGCagtggctggaggaggacagacCTGTCTTCAGCGACGGCTCAT
TGGTGGGAGAGTGGGTCAAGGAGGCACATCGCCTGCGGTTACTGCCTTTT
ATGGAACGAGCAGAATTTCTCAAGGCTAAGTCGTTCGACGATTTAAACGT
CTTTCGGGCCCGGCAGGTAGCATGGCGGGAAATGCTGGAGGCAAAGGGAG
TGCTGGAGCCGTACCAGGGCATGCCTGAGACGGGGGTCACGGAGCTGTCC
CCCGAGGCGCACGCAGCGAAGCAAGCGCGAGCCCAGGAGCAGTACACAGC
TGATATGATCAACCACGAGGAGGCCTTGCTTGAGAGCGTGGACGTGCTGT
GCCGGAACGCGCGCTTTGAGGGTCTGGCCGCGGACAACAAAGTGCGGGTG
GTGATGAATGGGCGCATGGAGccgcaggaggtggaggtgctggaaggAGC
GCCCCTCGGGGATGCCAGGCTTCTGGCATTAGCAGTGGAAGCGGCGATGG
ACGCGGCCTACAAGCAGAGCGCCGAATTTTACGAGGAAACCATAACGACG
GAGTATCTGGCCCAGGCTGAAACGCcgacggacgtggaggggatTGTTGA
GGCGCTGGCACGCAAGGAGTTTGTGATTGATGAGCACGTGGTCGATCCAA
CCATGCTTTGA
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Coding sequence (CDS) from alignment at CM002472.1:196234..197344+

>rna7541 ID=rna7541|Name=rna7541|organism=Nannochloropsis gaditana|type=CDS|length=1974bp|location=Sequence derived from alignment at CM002472.1:196234..197344+ (Nannochloropsis gaditana)
ATGAGGAGAAATGATTGCATGTGGCTAGTGCCCATAATTGTTATGACCAA
CACTACCTTATGCTCTGCTTTCTTGCTTCCACGACCGTCATGCAAGGTTT
TACGAACTCAGGTATGGAGCACTGTGACGGATAGGTCACCGTCCTCTGTG
ACCTCCTCGAGCGCTAGCGGGACCTTAGCCCCTGTCCTACCGGGTATGGC
GGAAGATGAACTCGATGATCCCAACGAATACTACGAGCCTGAGCCCGTGG
ACCCCACTGTAGACGAGCTCAAGGCACTGGGtgcggaggagctggcgacG
GTGCTTCCCGGCTCTGATGGGAAAACGATAGGGCagtggctggaggagga
cagacCTGTCTTCAGCGACGGCTCATTGGTGGGAGAGTGGGTCAAGGAGG
CACATCGCCTGCGGTTACTGCCTTTTATGGAACGAGCAGAATTTCTCAAG
GCTAAGTCGTTCGACGATTTAAACGTCTTTCGGGCCCGGCAGGTAGCATG
GCGGGAAATGCTGGAGGCAAAGGGAGTGCTGGAGCCGTACCAGGGCATGC
CTGAGACGGGGGTCACGGAGCTGTCCCCCGAGGCGCACGCAGCGAAGCAA
GCGCGAGCCCAGGAGCAGTACACAGCTGATATGATCAACCACGAGGAGGC
CTTGCTTGAGAGCGTGGACGTGCTGTGCCGGAACGCGCGCTTTGAGGGTC
TGGCCGCGGACAACAAAGTGCGGGTGGTGATGAATGGGCGCATGGAGccg
caggaggtggaggtgctggaaggAGCGCCCCTCGGGGATGCCAGGCTTCT
GGCATTAGCAGTGGAAGCGGCGATGGACGCGGCCTACAAGCAGAGCGCCG
AATTTTACGAGGAAACCATAACGACGGAGTATCTGGCCCAGGCTGAAACG
CcgacggacgtggaggggatTGTTGAGGCGCTGGCACGCAAGGAGTTTGT
GATTGATGAGCACGTGGTCGATCCAACCATGCTTTGAATGAGGAGAAATG
ATTGCATGTGGCTAGTGCCCATAATTGTTATGACCAACACTACCTTATGC
TCTGCTTTCTTGCTTCCACGACCGTCATGCAAGGTTTTACGAACTCAGGT
ATGGAGCACTGTGACGGATAGGTCACCGTCCTCTGTGACCTCCTCGAGCG
CTAGCGGGACCTTAGCCCCTGTCCTACCGGGTATGGCGGAAGATGAACTC
GATGATCCCAACGAATACTACGAGCCTGAGCCCGTGGACCCCACTGTAGA
CGAGCTCAAGGCACTGGGtgcggaggagctggcgacGGTGCTTCCCGGCT
CTGATGGGAAAACGATAGGGCagtggctggaggaggacagacCTGTCTTC
AGCGACGGCTCATTGGTGGGAGAGTGGGTCAAGGAGGCACATCGCCTGCG
GTTACTGCCTTTTATGGAACGAGCAGAATTTCTCAAGGCTAAGTCGTTCG
ACGATTTAAACGTCTTTCGGGCCCGGCAGGTAGCATGGCGGGAAATGCTG
GAGGCAAAGGGAGTGCTGGAGCCGTACCAGGGCATGCCTGAGACGGGGGT
CACGGAGCTGTCCCCCGAGGCGCACGCAGCGAAGCAAGCGCGAGCCCAGG
AGCAGTACACAGCTGATATGATCAACCACGAGGAGGCCTTGCTTGAGAGC
GTGGACGTGCTGTGCCGGAACGCGCGCTTTGAGGGTCTGGCCGCGGACAA
CAAAGTGCGGGTGGTGATGAATGGGCGCATGGAGccgcaggaggtggagg
tgctggaaggAGCGCCCCTCGGGGATGCCAGGCTTCTGGCATTAGCAGTG
GAAGCGGCGATGGACGCGGCCTACAAGCAGAGCGCCGAATTTTACGAGGA
AACCATAACGACGGAGTATCTGGCCCAGGCTGAAACGCcgacggacgtgg
aggggatTGTTGAGGCGCTGGCACGCAAGGAGTTTGTGATTGATGAGCAC
GTGGTCGATCCAACCATGCTTTGA
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Synonyms
Publications