EWM23166.1, cds7523 (CDS) Nannochloropsis gaditana

Overview
NameEWM23166.1
Unique Namecds7523
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:196234..196344 +
Alignment locationCM002472.1:196469..197344 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23166.1
ProductYbaB-like DNA-binding protein
Orig transcript idgnl|cribi|Naga_100043g30.7249.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:196234..196344 +
CM002472.1supercontigCM002472.1:196469..197344 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR004401YbaB
Homology
[Close]
BLAST of EWM23166.1 vs. NCBI_GenBank
Match: gi|585104047|gb|EWM23166.1| (YbaB-like DNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 670.233 bits (1728), Expect = 0.000e+0
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 0 
Query:    1 MRRNDCMWLVPIIVMTNTTLCSAFLLPRPSCKVLRTQVWSTVTDRSPSSVTSSSASGTLAPVLPGMAEDELDDPNEYYEPEPVDPTVDELKALGAEELATVLPGSDGKTIGQWLEEDRPVFSDGSLVGEWVKEAHRLRLLPFMERAEFLKAKSFDDLNVFRARQVAWREMLEAKGVLEPYQGMPETGVTELSPEAHAAKQARAQEQYTADMINHEEALLESVDVLCRNARFEGLAADNKVRVVMNGRMEPQEVEVLEGAPLGDARLLALAVEAAMDAAYKQSAEFYEETITTEYLAQAETPTDVEGIVEALARKEFVIDEHVVDPTML 328
            MRRNDCMWLVPIIVMTNTTLCSAFLLPRPSCKVLRTQVWSTVTDRSPSSVTSSSASGTLAPVLPGMAEDELDDPNEYYEPEPVDPTVDELKALGAEELATVLPGSDGKTIGQWLEEDRPVFSDGSLVGEWVKEAHRLRLLPFMERAEFLKAKSFDDLNVFRARQVAWREMLEAKGVLEPYQGMPETGVTELSPEAHAAKQARAQEQYTADMINHEEALLESVDVLCRNARFEGLAADNKVRVVMNGRMEPQEVEVLEGAPLGDARLLALAVEAAMDAAYKQSAEFYEETITTEYLAQAETPTDVEGIVEALARKEFVIDEHVVDPTML
Sbjct:    1 MRRNDCMWLVPIIVMTNTTLCSAFLLPRPSCKVLRTQVWSTVTDRSPSSVTSSSASGTLAPVLPGMAEDELDDPNEYYEPEPVDPTVDELKALGAEELATVLPGSDGKTIGQWLEEDRPVFSDGSLVGEWVKEAHRLRLLPFMERAEFLKAKSFDDLNVFRARQVAWREMLEAKGVLEPYQGMPETGVTELSPEAHAAKQARAQEQYTADMINHEEALLESVDVLCRNARFEGLAADNKVRVVMNGRMEPQEVEVLEGAPLGDARLLALAVEAAMDAAYKQSAEFYEETITTEYLAQAETPTDVEGIVEALARKEFVIDEHVVDPTML 328
The following BLAST results are available for this feature:
BLAST of EWM23166.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585104047|gb|EWM23166.1|0.000e+0100.00YbaB-like DNA-binding protein [Nannochloropsis gad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7541rna7541Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications