|
|
Properties
| Property Name | Value |
|---|
| Product | tricarboxylate transport mitochondrial-like protein |
| Orig transcript id | gnl|cribi|Naga_100043g14.7229.mrna |
| Orig protein id | gnl|cribi|Naga_100043g14.7229 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002472.1 | supercontig | CM002472.1:167145..169437 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7527 ID=rna7527|Name=rna7527|organism=Nannochloropsis gaditana|type=mRNA|length=2777bp
GGAATCGAAGGATACGGCCAACACAATGTTCGAAATTGCCATGCCCGCCA
TCTTTAATCCGGGGTTTACTGAATAATGCCCGTCACACTGAACGTGCTTC
TTCTAACTCCAGTTGTCCGAGGTATTCAACGGTCTCAAAGCAGGCATTCG
CCCGTAGGATCACTCTTCGTCGTCAGATCAGAGCAAGTCGACCTTTACAA
GTGATAACATTTGAAAAGAAGCTGCCTTCCGCGGGACTTGGTAACAAGCG
GTGTACCTGGGTCTAGCCGTCGCTTTGGCTCCTGGCGATCAGCCGAGAGG
CGAGCAGGAGCAAGAACAAAGCAAACGTGCGATTGCAACAAGCGGCCCTA
AAAACAATAATCATGCGAACTTATCAGAGAAGGAAGAGTGTACAAATTGA
TTCTTTGCCCCCGCAAATTAGAAACATTAAACGGTTTGCAAAGGTTGCAA
GATATGGGAGTGAGCTATGGCGGTAGACTTATCCTCTTCGCACTCCTTGC
GGGAGTCACTCTTCCAACGGCTACCTGCTCAGCTTGCGATCGTCCTAGGC
CATCAACCTCGGATGTAAACCGAGCTGCCACAATTGAAAGGAGGCTTCAA
GCGCTGGAGCAATGGCGCATTGAGGTAAAGCTCACTAAACCATGAAGGCC
AGCCTCATACCTCTCGAAATCTCCAGGAGGTTGTTACTCAGCGGTCTCCG
CCTCACGATGCTATATATTCACACATACGTTTTTAAGATCGAGAAGCCGA
GACGGTTCCGCGCCTTGTGGCGTGTCTGACTTTGCATATGTCCATTTTCC
GTCTCCATCACTTGCACGAGCACACAGTTGGCGGAGCGCGAGGCTGTAGT
GCAAGCGCGGGAAGAAAATCTCGGTATGAAAGATTTAGGCGGTGTGGGTG
AAAATGGAGGAGGTCGAGGAGGTGAAGGCTTGTTGGCTCCGCTTTCAAAA
AAGAGCGTGGGGGATAGGGCGGTGGACGGGGAGAGCGAGGGGGATAGGGC
GGTGGAAGGGGCTGAAGCGGAAGTGTTGGTGTTCGAGGACACATTCGAGG
AGCTGGATATGGAGATATGGGCACATGACATCACCATGGCGGGTGGTGGA
AATTGGGAATTCCAGTACTACACGAACAATCGCAGCAACAGCTTTGTCGA
GGAAGGCGTGCTCTACCTGCAGCCAACGCTCACGGAGGAGACCATCGGGG
AGGCGAACATGATGGGTGAGAAGCCGTTTCGTTTCGACATGTGGGGCATG
TGGCCCTCTGATGCATGCACGTCCAACGCGTTCTATGGCTGCGAACGCAT
ATCCGACGCCGGGGCGCAGCTGGTCATCAACCCGGTGCAGTCAGCGCGCC
TCCGGACCACAGGCACCTTCACCTTCCAGTACGGGCGCCTGGAGGTGGAG
GCCAAGCTGCCACGAGGAGACTGGCTCTGGCCCGCCATCTGGCTGCTGCC
TGAGAAGAATGTGTATGGACAGTGGCCTGCGTCGGGGGAGATTGACGTGA
TGGAGTCGCGGGGGAACAAGCCTGGGTATGTGAAAGGCGGCTACGACTCC
TTCGGTAGCTGCATGCATTGGGGACCCTATTTCGCGCTCGACAAGTACGA
GATGACTTGCGAGAGCTTCACTTTACCGGAGGGCAAAGGTACTTTTAACG
ACGACTTTCACGTCTTCGGCATGGTGTGGAACGAGCAGGGGCTCTACACC
TACCTTGACAGAGAAGACCAGAAGGTCCTTGAGGTCAAGTTCGACCGCCC
ATTCTTCGAGCGTGGCGACTTCGCTGACGTACCGGGCACGGGCAATCCCT
GGATCGGCCGGCCGAATGCGGCTCCTTTCGACCAACCATTCTACCTGGTC
CTCAACGTGGCCGTGGGCGGACTAAGCAACTTTTTCGAGGACGGCGAGGA
CGGAAAGCCGTGGACTAATACGGGCAAGGGGGCCCCCTACCTCTTTGCCA
AAGCAAAAGATGAATGGTATCCGAGCTGGGCTGGCAGAGACTCTGCTTTG
CAGGTCAAGTCCGTCCGTGTCTGGCAGAAGCCCGGCCAGGGCAAGGCCTC
CGTCCTAGGCGAGAAACCCCGAGAAGGCGCGGGTGTGGGTGGCGCGGGCA
ATGACGCTGTCCTCGCCCCGTCGTCGGCCCCTCGCAAAGGTCACGATAGC
CATCAAAATAACGATAGCCATCAAAATAAGCCTTTGAGCGGTGTAGACAC
TTCAAAACGCAGGGGCTCGACCGGTGGCTGGATATTTGGGTCTCTCCTGG
CGCTGGTCTTGGCTGGTGCGGGCGTGGCTTACGGCGTATATCTCCGCATG
GGTGGGTTCCCAGGGACTGGTAACCGAGTGGGCGGAGGAAGGGGAGGGCA
AGCGTACACGAGCGTGGTAGGAGGGTCTGTTGCACCCTACCAAGCCACTT
CTTACTCCGATGCAACAAGGTCAACGCACCACATATGAGCTGTGCATGAA
AGTCGACGATCCATGACCGCTTGTAGCAAGGTCAAAGTTTCAACCCACGG
TCACTTGAAGCCACGTGGAAAGGAGCACTGCAATGGTAGAATGCACAGCA
CGATTCTACGTAAAAAGAAAGAATGATAATCATAAGAACAATTTCCGGTA
AACCGCACGGGAGCACTAGGTTTTCCGGGGGCTCGGAAAGTGTGGAATGG
ACGTAAAAGGCGGCATGCATCATGTCGTTGGTCACGGTGCCCTTCAAAAT
TAACTTTGAATGACATCTCTCACAACATGCGCCACACTCCTTTCAGTGTT
AATCGTGTTATATGTCTTTTCTCACCG back to topprotein sequence of rna7527 >rna7527-protein ID=rna7527-protein|Name=rna7527|organism=Nannochloropsis gaditana|type=polypeptide|length=310bp
MPLHLCLPGVWQACQLKQHYALNAFTGPLDCVRFTLRTKGPLGLYKGLTP
WLVFAFPRSAVRFSTYEFVSQRFRETVSKESQEGELQNGKLDPYLSMAAG
SIAGAVEFLTVGTPMQCIQVKMAHDAYSKVPRFHGFVSAIVGIVRAEGLL
KGLYAGLGPTVLKGAVNNCIRFSTFSELKYIYQKYKLNVADNRLTATFEN
FSTCPESDHFQAVHEAILNPLETMLLGATSGGLSAIATHPIDTVKSNMQS
LSADKYTSSWNCFLSILRNQGLPGLYQGMAPRFVRVSLEIGLHFSLYEQI
ACRIDESLFN back to topmRNA from alignment at CM002472.1:167145..169437+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7527 ID=rna7527|Name=rna7527|organism=Nannochloropsis gaditana|type=mRNA|length=2293bp|location=Sequence derived from alignment at CM002472.1:167145..169437+ (Nannochloropsis gaditana)
AAGTCCCGCGGAAGGCAGCTTCTTTTCAAATGTTATCACTTGTAAAGGTC
GACTTGCTCTGATCTGACGACGAAGAGTGATCCTACGGGCGAATGCCTGC
TTTGAGACCGTTGAATACCTCGGACAACTGGAGTTAGAAGAAGCACGTTC
AGTGTGACGGGCATTATTCAGTAAACCCCGGATTAAAGATGGCGGGCATG
GCAATTTCGAACATTGTGTTGGCCGTATCCTTCGATTCCGGGCACAAATT
AGTTATTATCCATAAAAAATTACTTGTCAATTTTCTGGTCATTTGAATGA
AGCCTCGGTCGGCACATGGAGTGGTCTCTCGTAAGGCTGGCTACTGGGAA
GCCCGTTGTATGAGCGACCTACTATATTTCTCGCACGAACTTGGTAACTT
TCACGATTCACGTGTCACAATAGAAGCTCAAATTGCCTGTCCGTCCTACC
CGTAGCTATCCATCATTCGTCTCGCTGACAGCACTCTGAAGTCAAGTTGA
TGTTAACCTTGTCAATGATGAAAGGAAGAGCGCTCTAGCATGGTACGTGA
CAAATCGGTGCAGAAGCCCCTTGTCATACTCACAGATAACGTGCTGGCAA
CATGGTGTGTGTTCCGATCTATGTTTCAATTGAAGCTTACTTATATGTCG
TTTGGCATTATAGCCAAAGAACACCACAATGACAGAGCTTTCGAACGAAT
TAGCTCATCCGAAGTCGTCCCTGTCACCTTCTCGGCCCCGACATGCCCTT
ACACCTGTGTTTGCCGGGGGTTTGGCAGGCTGTACGTACCAATGCAATCC
ATGTATGGTCATTTGAATCCATGTTCTGCGAGTTACTTTCTTTTTGACAT
AATTTTCGTTCTATCGCACATTTCTTGTTTCTGGCCATGCATAGGGATAG
AAATCTGTTTAACTTTCCCTTTCGAATTTACGAAGACTCAGGTTCGTCCT
CACCCTTCAACACTCTCTCGAAAACCTTTAAGTTTTTGTGAGTATGTCTC
CGACGTTTTTATTTCTCTATTTTATACTACTGCAGTGCCAGCTTAAACAG
CACTATGCACTCAATGCCTTTACGGGACCTTTGGACTGTGTACGCTTCAC
CCTAAGAACTAAAGGCCCTCTAGGTTTATACAAAGGTCTCACACCATGGC
TGGTATTTGCTTTCCCACGGTCCGCTGTCCGATTTTCAACCTATGAGTTC
GTTAGTCAACGATTTCGGGAAACCGTCTCGAAAGAAAGCCAAGAAGGCGA
ATTGCAGAACGGGAAACTTGATCCATATCTCAGTATGGCAGCAGGATCCA
TCGCTGGTGCAGGTACATTATGTGAGGCGACAAATATCAATGTTCTGCCA
AAGTAATATGCGCACGATAATGGTAGTCCTCATGGAATCTATTGGATTTC
TTGTTTTTACCAAAAATGCACAGTGGAATTCCTGACTGTTGGAACACCTA
TGCAATGCATCCAAGTCAAGATGGCGCATGATGCCTACTCTAAGGTTCCA
CGATTTCACGGCTTTGTTAGTGCAATAGTAGGAATCGTTCGGGCAGAAGG
TCTTTTGAAAGGGCTGTATGCAGGACTAGGTCCAACCGTGTTAAAGGGAG
CCGTGAATAATTGCATCCGATTCTCAACTTTTTCAGAACTCAAGTATATT
TACCAGAAATACAAACTAAATGTTGCAGATAACAGATTAACGGCTACGTT
TGAGAACTTCTCAACCTGCCCGGAAAGCGACCATTTTCAGGCGGTCCACG
AAGCTATTTTGAATCCACTGGAAACAATGTTGCTGGGCGCTACATCAGGA
GGACTTTCCGCAATCGCAACGCATCCTATCGACACAGTTAAATCAAACAT
GCAGTCGTTGAGTGCTGACAAGTATACATCATCTTGGAATTGTTTTCTGT
CTATCTTACGCAACCAAGGTCTTCCTGGGCTTTATCAGGGTATGGCTCCC
CGATTTGTCCGTGTTTCTCTTGAGATTGGCCTACACTTTTCGCTCTATGA
ACAAATAGCTTGTCGTATTGACGAAAGCTTGTTCAATTAAGGACTTGATG
ACGATTGCGTTCGGGTGGGAGTGGGTCTCTCTTGACAAACAAAATATGAA
ACCAACAAATTCACTCGCCTTGAGCGCTTCTGCCAGCTCCGCTGAGACAC
GGAACACATCGTCCAAGCAATAGTACTTCATAAATGCAAAGCGGTCAGAG
GGAGTAAAGCGTTTGCTAAATTATCATTCTGATTGCTGCAGTAAATGGAT
GAAGCAATTGAATATTGAGGTGCGTTCTTTTCATACgtcattt back to topCoding sequence (CDS) from alignment at CM002472.1:167145..169437+ >rna7527 ID=rna7527|Name=rna7527|organism=Nannochloropsis gaditana|type=CDS|length=2799bp|location=Sequence derived from alignment at CM002472.1:167145..169437+ (Nannochloropsis gaditana)
ATGCCCTTACACCTGTGTTTGCCGGGGGTTTGGCAGGCTTGCCAGCTTAA
ACAGCACTATGCACTCAATGCCTTTACGGGACCTTTGGACTGTGTACGCT
TCACCCTAAGAACTAAAGGCCCTCTAGGTTTATACAAAGGTCTCACACCA
TGGCTGGTATTTGCTTTCCCACGGTCCGCTGTCCGATTTTCAACCTATGA
GTTCGTTAGTCAACGATTTCGGGAAACCGTCTCGAAAGAAAGCCAAGAAG
GCGAATTGCAGAACGGGAAACTTGATCCATATCTCAGTATGGCAGCAGGA
TCCATCGCTGGTGCAGTGGAATTCCTGACTGTTGGAACACCTATGCAATG
CATCCAAGTCAAGATGGCGCATGATGCCTACTCTAAGGTTCCACGATTTC
ACGGCTTTGTTAGTGCAATAGTAGGAATCGTTCGGGCAGAAGGTCTTTTG
AAAGGGCTGTATGCAGGACTAGGTCCAACCGTGTTAAAGGGAGCCGTGAA
TAATTGCATCCGATTCTCAACTTTTTCAGAACTCAAGTATATTTACCAGA
AATACAAACTAAATGTTGCAGATAACAGATTAACGGCTACGTTTGAGAAC
TTCTCAACCTGCCCGGAAAGCGACCATTTTCAGGCGGTCCACGAAGCTAT
TTTGAATCCACTGGAAACAATGTTGCTGGGCGCTACATCAGGAGGACTTT
CCGCAATCGCAACGCATCCTATCGACACAGTTAAATCAAACATGCAGTCG
TTGAGTGCTGACAAGTATACATCATCTTGGAATTGTTTTCTGTCTATCTT
ACGCAACCAAGGTCTTCCTGGGCTTTATCAGGGTATGGCTCCCCGATTTG
TCCGTGTTTCTCTTGAGATTGGCCTACACTTTTCGCTCTATGAACAAATA
GCTTGTCGTATTGACGAAAGCTTGTTCAATTAAATGCCCTTACACCTGTG
TTTGCCGGGGGTTTGGCAGGCTTGCCAGCTTAAACAGCACTATGCACTCA
ATGCCTTTACGGGACCTTTGGACTGTGTACGCTTCACCCTAAGAACTAAA
GGCCCTCTAGGTTTATACAAAGGTCTCACACCATGGCTGGTATTTGCTTT
CCCACGGTCCGCTGTCCGATTTTCAACCTATGAGTTCGTTAGTCAACGAT
TTCGGGAAACCGTCTCGAAAGAAAGCCAAGAAGGCGAATTGCAGAACGGG
AAACTTGATCCATATCTCAGTATGGCAGCAGGATCCATCGCTGGTGCAGT
GGAATTCCTGACTGTTGGAACACCTATGCAATGCATCCAAGTCAAGATGG
CGCATGATGCCTACTCTAAGGTTCCACGATTTCACGGCTTTGTTAGTGCA
ATAGTAGGAATCGTTCGGGCAGAAGGTCTTTTGAAAGGGCTGTATGCAGG
ACTAGGTCCAACCGTGTTAAAGGGAGCCGTGAATAATTGCATCCGATTCT
CAACTTTTTCAGAACTCAAGTATATTTACCAGAAATACAAACTAAATGTT
GCAGATAACAGATTAACGGCTACGTTTGAGAACTTCTCAACCTGCCCGGA
AAGCGACCATTTTCAGGCGGTCCACGAAGCTATTTTGAATCCACTGGAAA
CAATGTTGCTGGGCGCTACATCAGGAGGACTTTCCGCAATCGCAACGCAT
CCTATCGACACAGTTAAATCAAACATGCAGTCGTTGAGTGCTGACAAGTA
TACATCATCTTGGAATTGTTTTCTGTCTATCTTACGCAACCAAGGTCTTC
CTGGGCTTTATCAGGGTATGGCTCCCCGATTTGTCCGTGTTTCTCTTGAG
ATTGGCCTACACTTTTCGCTCTATGAACAAATAGCTTGTCGTATTGACGA
AAGCTTGTTCAATTAAATGCCCTTACACCTGTGTTTGCCGGGGGTTTGGC
AGGCTTGCCAGCTTAAACAGCACTATGCACTCAATGCCTTTACGGGACCT
TTGGACTGTGTACGCTTCACCCTAAGAACTAAAGGCCCTCTAGGTTTATA
CAAAGGTCTCACACCATGGCTGGTATTTGCTTTCCCACGGTCCGCTGTCC
GATTTTCAACCTATGAGTTCGTTAGTCAACGATTTCGGGAAACCGTCTCG
AAAGAAAGCCAAGAAGGCGAATTGCAGAACGGGAAACTTGATCCATATCT
CAGTATGGCAGCAGGATCCATCGCTGGTGCAGTGGAATTCCTGACTGTTG
GAACACCTATGCAATGCATCCAAGTCAAGATGGCGCATGATGCCTACTCT
AAGGTTCCACGATTTCACGGCTTTGTTAGTGCAATAGTAGGAATCGTTCG
GGCAGAAGGTCTTTTGAAAGGGCTGTATGCAGGACTAGGTCCAACCGTGT
TAAAGGGAGCCGTGAATAATTGCATCCGATTCTCAACTTTTTCAGAACTC
AAGTATATTTACCAGAAATACAAACTAAATGTTGCAGATAACAGATTAAC
GGCTACGTTTGAGAACTTCTCAACCTGCCCGGAAAGCGACCATTTTCAGG
CGGTCCACGAAGCTATTTTGAATCCACTGGAAACAATGTTGCTGGGCGCT
ACATCAGGAGGACTTTCCGCAATCGCAACGCATCCTATCGACACAGTTAA
ATCAAACATGCAGTCGTTGAGTGCTGACAAGTATACATCATCTTGGAATT
GTTTTCTGTCTATCTTACGCAACCAAGGTCTTCCTGGGCTTTATCAGGGT
ATGGCTCCCCGATTTGTCCGTGTTTCTCTTGAGATTGGCCTACACTTTTC
GCTCTATGAACAAATAGCTTGTCGTATTGACGAAAGCTTGTTCAATTAA back to top
|