rna7523, rna7523 (mRNA) Nannochloropsis gaditana

Overview
Namerna7523
Unique Namerna7523
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2300
Alignment locationCM002472.1:158791..159545 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100043g9.7254.mrna
Orig protein idgnl|cribi|Naga_100043g9.7254
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:158791..159545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100043g9gene7283Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7523rna7523-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23171.1cds7505Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7523 ID=rna7523|Name=rna7523|organism=Nannochloropsis gaditana|type=mRNA|length=2300bp
CGGCTTTCGCCCTTCCTAGCTCTCGCTCGTTCTCCCCTCCGAGTCCTTGA
AGATATATGACCGGATGGCAAAGGCCGTGAGAACAGTACCATCAATGGAG
TTTGAAAAGCCGTCAATGTCTACAGAAAAGCGGCGCGTCGTACGTCTTGA
TTTAGGCGGTGAATAGAGTTGTGTGGTTACACTGGACTGGAACTTTGTAT
CACGACTTATCTGTCCGTGTTTTCCTCCCCTCCTTGCTTCATCTCTGTTC
CTGCAAGAGGCGGTGTTCTCGTTGGACTACGCATTTTGGGGGGGTCTGGT
TCAAAATTTGTAGCCTTACAAACGGCAAAAGAGGAAGACGACTTTATTGG
AGCGCTGGCAAGAGAATCGAATCTGGGATCTGCAACACGATTATGAGCAA
CGGCGAAGGCAGTGACAGAGGAGGCGGGGCGCCCGCATCGGAGTCCATGG
AAGAATCCGCGTCTCCGGGCGTATCCGCACCCGCTAGTCCGGATTCAATG
ATGTATACTTCTAACAAGATCAATGAGCGTGGCCTTCTTTTCGCGGGCGA
CCCCGACAGAGATGTCTTGACGAGTGCGGCGGCGACGGTAGCGGCGGCAA
GTGAAGCAGCGACGATGAACGGGGAGGTGTTGAGGAGGGTAATCGGGGAC
CTGAAGGAGCTGGAGGGGGAGGCCGCCAGCAGCTCGGTCAAGGCGGGAAT
CGCGGACCAGCGCCGGCAACTAACGGCTTTATTGCGGGCTAGCGTGCAGA
AGCGCTGGCGCAAGGCCGTGACGGGCGACGAGATGAAGCGCGTGCGGGAC
CACATCCGAGAACCCCCCGTGGCCCGGCGCCTGGATAAGCTCGCCTTCAC
CTTCGGCGTGCTCAACCTGACAGTGAGCGAGTTTATGCTCATCAAGTTCC
CTCACGTCTTCTGGGCCTGGTACATGGCTGTGATTCCAGTGCTGGTCTTC
TTCCGCATCCCGCACTACCGCTCTCTCAAGTGGGGATTCTTCCTCCTCGA
CTTCTGCTATTTTGTCCAAGTCCTATGCATACTTCAGCTCTACGCTTTCC
CATCCAACTGCAACCTGCTCAAGTCCATTTTCTTGCTCGCGAATGGGCCG
CTGGCTTTCGCGGTTCCTGTGTGGCGCAACAGTCTGGTCTTCCATGACTT
GGAGAAGATCACCAGCCTCTACATCCACGTTTACCCGGGCCTCCTCCTTT
ATGCACTCAGATGGTACCCCTCCTCACCATCAGCAGCTGCGACGCTGGAC
GCCTGCGGGTCAATGGATGTCAAGGACCTCCTCCCCGCGGCCGTCGTGTA
CTTGGCTTGGCAAATCATGTACTACGTGAAAATCGAAATTCTGGACAGGG
CCCGTTTAGAAGCCGACCCGGAGCTGCAGACAAGCTTGCGCTGGCTGGCG
AAGGACCATAAGAACGCCCTGCACCGCCTGGTGCTCCGCCTGACCCGAGC
CACGGGTGTGCTCGCTCCCGACGAGCGCTTTGACCACCGAACGCTCAAGA
CCAAGTCGATCTTCATCCTTACACAGTTCATCTACACTTTACTGACGTGT
CTACCTGCCCTTGTCATCTATCATTCCTTCCAATTGCATGTCGCCTACGG
GCTGGGCATGTTCACGGTCGCCGTCTTCAACGGGGCTAATTATTACATCG
ACGTCTTCTCGGTGCGCTACCAGTCGAAGTACCCACGGGAGCGGCCGTTC
GGCCTTGGGAAGGTCCCCGTGCTGAGGACCACAGCCGAAGGGTCGGGAGA
CTCAGCAGGAGACAGGGAAGCCACAGGGAAGAGTAAGGCGTCCTAAAGGT
GGTGAGCTTCTAGAATGTATATTACGGTCGGAGTTGCCGACTTGGTCAAA
ATGTGTGCAGGCATCTTCTATGCTCCTTGCCCCCACTCTTCCCATAAGCT
GGCGGAGGTATATTTTTTAAAATCACACGGACAAGCGTGCAGTCTAGGAA
TTTGAAGGAGGCATCAGTGATGGAGGTGTTCGACATTCAATGAGCTCTTC
AATACTCTTCTATGTAAAAGAAATAAGATTCACAACGTGGTTGGACATTG
AAAGCTATCTGGTTCCCTTGGAAGTAAGTGCACATGGTTGTTTCACTCTT
GTCAACAACGGTGCACAACGCTGCCGCGGTAGAAACGCAAAACCATGTCA
TCAAGGATCAACCTCATTGCGATGTGATTTTATATAAAAATGAGGAAACT
GGCTTTTTCTTTTGCCACTATCGCCCGTTCTCTTTCTCGCGGCTATAAGA
AAAGATTTGATGCGCTGTGCCAGTCAGGGCAAGAGTCAGATGATTAAATT
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protein sequence of rna7523

>rna7523-protein ID=rna7523-protein|Name=rna7523|organism=Nannochloropsis gaditana|type=polypeptide|length=158bp
MLLPCSSTKCGLSWSSSETNPSGSSTSVTLRPRSIPPSALPSPSSSSSFC
PVSSSTSVDPSLSSGQQFLDAPATSSCCDGVCRVRSHEFVGCCQGRDLKR
STFYHKVSPRVVDGRAHAVDERKQHMEVPRKRVEELSEEEDAKHFHEYEL
KNAVLPGG
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mRNA from alignment at CM002472.1:158791..159545+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7523 ID=rna7523|Name=rna7523|organism=Nannochloropsis gaditana|type=mRNA|length=755bp|location=Sequence derived from alignment at CM002472.1:158791..159545+ (Nannochloropsis gaditana)
ATGTTACTACCATGCTCGAGCACCAAGTGTGGTCTGAGCTGGTCCTCATC
GGAAACAAACCCCTCTGGCTCCAGCACCTCGGTCACCCTGAGACCGCGAT
CCATCCCACCGTCCGCGctgccctccccatcctcctcctcctcattctgc
cctgtctcctcctcaacaTCAGTCGACCCCTCTCTTTCGTCAGGCCAGCA
ATTCCTTGACGCCCctgcaacctcctcctgttgGTGCTTCCCGCGTCGAA
GGCGCGGGGACTGCTGGTGGTCAAGAGGCTTGGAGATGGAATGGTGATGG
GTGTAGAGGGTGCCGAAGATCGAGTCGAGGAATTCGAGCTCAGAGAAATT
GTAGTCAATTCGAAGGTGATGGTCCCAATGATACCTGGTGAAGTGACGGC
GTGTGTCGTGTGAGGAGTCATGAGTTTGTCGGGTGCTGCCAAGGACGGGA
TTTGAAGAGGTCAACCTTCTATCATAAAGTCTCACCGTCATGAGCTTTCG
AGCAACAACTTTCTTGACTTCTATTCCCTGAGCTCACCCTCCTGATCAGG
CCGGGGGCGACCCTCCTTACCTGCCGTCGACGATGGTCCCCGGGATGTAG
AAAGCCGAGTGGTCGATGGCCGCGCCCACGCCGTTGATGAACGCAAACAG
CACATGGAAGTGCCAAGGAAGAGGGTTGAAGAGCtgagcgaagaggaaga
cgccaAACACTTCCATGAGTACGAACTCAAGAATGCTGTCCTGCCAGGCG
GATAG
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Coding sequence (CDS) from alignment at CM002472.1:158791..159545+

>rna7523 ID=rna7523|Name=rna7523|organism=Nannochloropsis gaditana|type=CDS|length=1431bp|location=Sequence derived from alignment at CM002472.1:158791..159545+ (Nannochloropsis gaditana)
ATGTTACTACCATGCTCGAGCACCAAGTGTGGTCTGAGCTGGTCCTCATC
GGAAACAAACCCCTCTGGCTCCAGCACCTCGGTCACCCTGAGACCGCGAT
CCATCCCACCGTCCGCGctgccctccccatcctcctcctcctcattctgc
cctgtctcctcctcaacaTCAGTCGACCCCTCTCTTTCGTCAGGCCAGCA
ATTCCTTGACGCCCctgcaacctcctcctgttgTGACGGCGTGTGTCGTG
TGAGGAGTCATGAGTTTGTCGGGTGCTGCCAAGGACGGGATTTGAAGAGG
TCAACCTTCTATCATAAAGTCTCACCCCGAGTGGTCGATGGCCGCGCCCA
CGCCGTTGATGAACGCAAACAGCACATGGAAGTGCCAAGGAAGAGGGTTG
AAGAGCtgagcgaagaggaagacgccaAACACTTCCATGAGTACGAACTC
AAGAATGCTGTCCTGCCAGGCGGATAGATGTTACTACCATGCTCGAGCAC
CAAGTGTGGTCTGAGCTGGTCCTCATCGGAAACAAACCCCTCTGGCTCCA
GCACCTCGGTCACCCTGAGACCGCGATCCATCCCACCGTCCGCGctgccc
tccccatcctcctcctcctcattctgccctgtctcctcctcaacaTCAGT
CGACCCCTCTCTTTCGTCAGGCCAGCAATTCCTTGACGCCCctgcaacct
cctcctgttgTGACGGCGTGTGTCGTGTGAGGAGTCATGAGTTTGTCGGG
TGCTGCCAAGGACGGGATTTGAAGAGGTCAACCTTCTATCATAAAGTCTC
ACCCCGAGTGGTCGATGGCCGCGCCCACGCCGTTGATGAACGCAAACAGC
ACATGGAAGTGCCAAGGAAGAGGGTTGAAGAGCtgagcgaagaggaagac
gccaAACACTTCCATGAGTACGAACTCAAGAATGCTGTCCTGCCAGGCGG
ATAGATGTTACTACCATGCTCGAGCACCAAGTGTGGTCTGAGCTGGTCCT
CATCGGAAACAAACCCCTCTGGCTCCAGCACCTCGGTCACCCTGAGACCG
CGATCCATCCCACCGTCCGCGctgccctccccatcctcctcctcctcatt
ctgccctgtctcctcctcaacaTCAGTCGACCCCTCTCTTTCGTCAGGCC
AGCAATTCCTTGACGCCCctgcaacctcctcctgttgTGACGGCGTGTGT
CGTGTGAGGAGTCATGAGTTTGTCGGGTGCTGCCAAGGACGGGATTTGAA
GAGGTCAACCTTCTATCATAAAGTCTCACCCCGAGTGGTCGATGGCCGCG
CCCACGCCGTTGATGAACGCAAACAGCACATGGAAGTGCCAAGGAAGAGG
GTTGAAGAGCtgagcgaagaggaagacgccaAACACTTCCATGAGTACGA
ACTCAAGAATGCTGTCCTGCCAGGCGGATAG
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Synonyms
Publications