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Properties
| Property Name | Value |
|---|
| Product | retinaldehyde binding protein 1 |
| Orig transcript id | gnl|cribi|Naga_100043g5.7255.mrna |
| Orig protein id | gnl|cribi|Naga_100043g5.7255 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002472.1 | supercontig | CM002472.1:151429..152760 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7520 ID=rna7520|Name=rna7520|organism=Nannochloropsis gaditana|type=mRNA|length=3432bp
CCGACTAAAAATAGCATCGCACATTTCGACACAGTGGTCGGGGCGATGGT
AGCAGCTGATTTCATCGAAATTTCCTCCTCCGAAGCCTCCACCTCCTCGT
CGGACGAGGGGGAGGAAGCTGAAAGGGAGGGGGCGGACTCGGCGCTCCAG
CCTCACGGGCAAAAACGGCGGGTCCGGTTGCGGCGGCCAAATCTTTCAAA
AAGTATTGAAAATATTGAAGTCAAGAAGAATGATGCCATGGCCCAAAAGT
CGAGAAAACGTTCAAGACAGCGGCCCTCTCTTTCCTCTTGCAGTAGCAGC
GACGAGGAAAAGGCGAGAAGCAATCGGCACGCGCATGATGCAGGGGAAAA
CACTGATACTTGTGCAGAAGAATGCATCAAATCAAGTGTGCGGCGGTCGA
ACTTTTCCTTATGCGGTAAGGACAGTGGTAACGACATGGAGGGGGAGGAT
GAAGAGCAAGAGGAGCAGGAGGAGGTTGATGAGCAGGCGGGGTATGAAAA
GATGGAGCCTGGTGGAAAAGGCACAAGACAAACTGTACGGCAAGGAAGGA
AACGCATTTCAGTCTCGATTAGAAGCGCGTCAAAGAGATCTCAGAGCCAC
GCGAAGAGCCCGGCGGGAGTCTCGGACGCCGGAAGCTTAGACGAGGAGGT
GGGGCCCCCGCGGCGTCGGTCCCGGACCGCCATGACAGGTGCCCCGCCCG
CCTCCTCCTCCCCCGCTGCCGATTCGACAAGCCTCTTCCCATCTTCTACC
AAGAAAGTGCCTAAAATGGAGGCGCATGCCCGCCCTAGCGGGAGTCATGT
CAACGCTTTGCGCCTCGTGTTTGGCAAAACGCCACGGCCTGCTCCAGATA
AAGCCTTCAGCACACAAGCCCCTTCCAGACCTCCACGCCATAACAAGGAG
GAGTCCACAAGAGGCAAATCAGGGGCTTTGGGTGCGGGCTCTCTGTGGAC
CGAGAAACACCGACCCCGTAAGGCAGCCGACCTCTCCATCCCGCCCAAGA
AAGTGCGCGAAGTCCAGCAATGGCTTGAGGGAGCCCTTGGTCTGGTGTGT
GAGGAAAGCGGCTTGCGTCCGGGCGCGCATAAAGGGGGGGGGCAGAAGCT
GCTGGTAGTGAGGGGGCCAGCTGGGGTGGGCAAGTCGGCTATGGTGCAGG
TCCTGGCGGAGGCGTTGGAGCTGCCAGTGCTGCGGTGGACGGAAGAGACC
CCCTGGGAGAGCCGCGAGGACGCGAAGAGAAAGAAGTGGGAGGGAGATGA
GATGGCGATGGGCGGAGGCGGGAGGCAGTACGTCTCGCAGGCGGAGGGGT
TCCGAGCCTTCGTGCGCGGCGCGGCCTATGGACCCCTGGAGATGGCGCCA
TCGGCAAAGGCTGGCCTCGATCGATCCAGGGATGCGGGTGACCCGAATGC
CTGCGGTGATTGGGCAGATCCGGGCGCAGAGGGTCGTCGCCAGGGCCCAA
AAGGAGAGCGGAAGGGGGAAGACGTGCGCCGGGCGCTGCTTGTGATGGAG
GAGGTACCTTACCATGCGACTGGGCGGGCCGCCGCCCATTTCCAAGCGGC
TCTCGCGAGCTTCCTGGCCGCGTCGGTACATCCTGCGGTGGTTATCTTCA
CGGAGGAGCACGAGGACAGGGCGGGCTCGGGCGCCCTGGAGCGCTTGCTG
ACCAGGCCATTGCTGCATGCGAAGGGCGTGCGCCAGATCCACATAAACCC
CGCCACCGACGCCAACATGCGCAGGATCCTGACCCACATCGCCTCAGCCG
AGGGCCTGGGCCCGTCCAGGTCCGAGGTGGAGGCTATCGTTGCCTGCAGC
CGGGGAGACCTCCGGCATGCCATCCTCACCCTCCAGCTGCAGCTTCAAGG
GAGCCGGGCTGCCCCTAACGCTCCCCCACGGGCCCTGGCCAGGTCCGACG
CTTCAGCTTCCTCCTCGCACCTGTTGCGACAATGCACGGGGGGGCGAAAG
GGGGAAGGGGGCCGAGGGGGGGAGGACAAGGGGGGAGAGGGAAGGGGAGG
AAGGAGAGTGGGGAGAAGGAGGGAGGGAGAGGAGGCGGAGAGGAAGGACA
CGTACATGTCCAGTTTCCACGCACTCGGCAAGGTCTTGCACGCGAAACGC
TTGCCGGAGTCGGATGAGTCCCGGAAAGGGGAGGGCGATCCGCGCGGAAG
ACTATCTTTCGTGCCCGAGGAAGTGCTCAAGAGGTGCGAGATGGAGGCGG
AGGGACTCTCCGCTTTCGTCCAGACCCACGCCCTCGCCCTTTTCGGAGAC
GTGGAGGAGCTGGCGGAGGCGATGGCATTCTTTGCCGACGCAGACGTGCT
GCTGGCGCGTGTTTACAGCACGGCATTCCATCGAGACCGGACTGACGCGA
CATTCCCTGAGGAATACGTCCTCTCGATCCTCGGACGCACGGTGGCTCAC
AGCAACCGCCACCCTGCGGGAGGACAGGGCACAGGCTTTCGCGGGATGAC
CGCACCTCGCTACTTCGAGGTCTTGCGGCAGCGGCGAGAGACAGGACGGA
GACTAGGCTTGCTCTGTCAAGATTATGTGGGGAAGGTGGCCAGGGCGGGA
AGGGCAAGCTCAATACGAATGACAGTGGGGGAGATGGTGGATGAGATGGT
GCCCTTCGCAAAGCAAATAGGTATGCCACAGGACGTGAGGGAGGGAATCG
GGGTGTCAATGTATGAGGGGTGGGGGGAGGGGAAGTTGGAGGATTGAGCA
TAGATCGAAGAGGGAGGGAGGACGGAGAATCGTCGTCATGCGAAGCGTCC
TTAGCCAGCGCCTTGAGTTTCCTCCGCCTCTTCAACCAGCGCCTTTGCCC
CTTTGAGCCCGTGGACGGGCCAGACGGAGATGGAGAAGAGCGCCTCGGTG
CCCAGCCTTCGGACTTGGACGTGGACGACATACAGGAGTGAGGGCAAAAG
GAGAGGGGCTTCCTTCTCGCAGTGGGTGCTATTGACTAGGCCTGAGCAAT
GGCGTGCTGGCCCTTGGATCTGGGGAAAGCGAGGGGAAGGACTATTTGTT
GCGACCAATTTTGTAAAATGTCGATGGGAAAGGTGGCCAGGGTCATTAAC
AGTCTGACTATCAGACAGACGTCAAACCCACTTGCTGAAAAAGGCGGGTT
GTCCCTTGTAAACAAAATCGAAACACACGAAACTCGGGGGGTAGACGCTC
CATCATTGGCGCTCAGCTTTCTTCGAGGTAACATGGACTTTCAAACAGGC
TGACATTGGTATCGACATTTCCACAAACGAGCTATTTATGCCTGCTGGGA
CCCACTCGTGGATTTTAGATGCGCATGAGCATGCATTCACTTGCCAGCGT
CTAGGCCCTTCTTTCTGTACAATTCGCCACTTGCTGGGCAACCCCACCAA
CTACTTCGCTTTCTTTTCCGCAAAATTGCCCCACGACCACACAGGATCGG
TCCCTCCCTTCCCCCCCGCCTCCTCCGCCACC back to topprotein sequence of rna7520 >rna7520-protein ID=rna7520-protein|Name=rna7520|organism=Nannochloropsis gaditana|type=polypeptide|length=412bp
MGKPTSPPTAPVPPDKSLPISPCKGLVIPSVPSALLHLSSPTSRDAKTSN
SYEGTQGVKGLEHRQHPKPSDEFPSLSSANSGTPLSHANSSFDDDVQPLP
HLSDAEADALVGRMRSDLRGDERCLETDACHITSAPLPDGFLLQCLRSRS
GVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKE
GRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNM
AHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRL
VVAMLGKKLRKRVRVLPHQEALQEDIDAEQLPPCLGGRLEGFDWAQWLVG
LPSKWRIVQKEGPRRWQVNACSCASKIHEWVPAGINSSFVEMSIPMSACL
KVHVTSKKAERQ back to topmRNA from alignment at CM002472.1:151429..152760- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7520 ID=rna7520|Name=rna7520|organism=Nannochloropsis gaditana|type=mRNA|length=1332bp|location=Sequence derived from alignment at CM002472.1:151429..152760- (Nannochloropsis gaditana)
ATGGGAAAACCCACGTCGCCCCCAACAGCGCCTGTCCCTCCGGATAAAAG
TTTGCCCATATCACCATGCAAAGGACTTGTGATTCCTTCCGTGCCTTCTG
CGCTCTTGCACTTGTCTTCTCCTACGTCACGGGACGCTAAGACGAGCAAC
AGTTACGAGGGGACCCAAGGAGTGAAAGGATTGGAACACCGTCAACATCC
AAAGCCGTCGGACGAATTTCCATCACTTTCTTCAGCAAACAGTGGAACCC
CTTTAAGCCATGCCAATTCCTCCTTTGATGATGACGTGCAACCACTTCCT
CACTTATCGGACGCGGAGGCCGACGCTCTTGTTGGGCGTATGCGCTCCGA
TTTGCGGGGAGACGAACGTTGTCTAGAAACAGATGCGTGCCATATCACCT
CTGCGCCACTTCCTGATGGGTTTCTTTTGCAATGCCTTCGGTCCCGTTCA
GGAGTGTACGACGAAGCTTTGATGGTGGCCCGGAACTTCCTCGCGTTCCG
ACGGGGGGCTGGATGGCCGCTTCGCCTCACAGCTCGCGACGTCAGTGGTG
GACCCTTGGAGTCAGGGGCGCATTGGATTTTGCCGGGTAAGGACAAGGAG
GGCCGCGGGCTTTTTGTCTTCAACGTTGGTCGCATTGACACTCGCTTGGG
AAGTCTGGAGCGGTACCAGCAGATGGGAGCGTACCTGGTGGAGCGCCTGA
CCCGAGAGGAGGAGGTGCAGCGGACGGGCCTGGTGATGGTAGTGAACATG
GCGCACGTGCCCTTGGGCCTATACCGGTCCTTAATCTCTCTTACTGACGC
CAAACGGGGGGTGCGCATGTGGCAAGACGCCTTCCCCAGTAAGCTCAAAC
GGATTTACGTGGTGGGGGGGTCAAGGTGGCTGCTGCAGGCGGTGCGCCTG
GTCGTGGCCATGCTCGGCAAGAAACTTCGAAAGCGCGTCCGTGTCCTGCC
TCACCAAGAGGCTTTGCAGGAAGATATCGACGCCGAGCAGCTCCCTCCAT
GCCTCGGCGGCCGCTTGGAGGGCTTCGACTGGGCGCAATGGGTGGCCACG
GTGGTGGCGGAGGAGGCGGGGGGGAAGGGAGGGACCGATCCTGTGTGGTC
GTGGGGCAATTTTGCGGAAAAGAAAGCGAAGTAGTTGGTGGGGTTGCCCA
GCAAGTGGCGAATTGTACAGAAAGAAGGGCCTAGACGCTGGCAAGTGAAT
GCATGCTCATGCGCATCTAAAATCCACGAGTGGGTCCCAGCAGGCATAAA
TAGCTCGTTTGTGGAAATGTCGATACCAATGTCAGCCTGTTTGAAAGTCC
ATGTTACCTCGAAGAAAGCTGAGCGCCAATGA back to topCoding sequence (CDS) from alignment at CM002472.1:151429..152760- >rna7520 ID=rna7520|Name=rna7520|organism=Nannochloropsis gaditana|type=CDS|length=2478bp|location=Sequence derived from alignment at CM002472.1:151429..152760- (Nannochloropsis gaditana)
TTGGTGGGGTTGCCCAGCAAGTGGCGAATTGTACAGAAAGAAGGGCCTAG
ACGCTGGCAAGTGAATGCATGCTCATGCGCATCTAAAATCCACGAGTGGG
TCCCAGCAGGCATAAATAGCTCGTTTGTGGAAATGTCGATACCAATGTCA
GCCTGTTTGAAAGTCCATGTTACCTCGAAGAAAGCTGAGCGCCAATGAAT
GGGAAAACCCACGTCGCCCCCAACAGCGCCTGTCCCTCCGGATAAAAGTT
TGCCCATATCACCATGCAAAGGACTTGTGATTCCTTCCGTGCCTTCTGCG
CTCTTGCACTTGTCTTCTCCTACGTCACGGGACGCTAAGACGAGCAACAG
TTACGAGGGGACCCAAGGAGTGAAAGGATTGGAACACCGTCAACATCCAA
AGCCGTCGGACGAATTTCCATCACTTTCTTCAGCAAACAGTGGAACCCCT
TTAAGCCATGCCAATTCCTCCTTTGATGATGACGTGCAACCACTTCCTCA
CTTATCGGACGCGGAGGCCGACGCTCTTGTTGGGCGTATGCGCTCCGATT
TGCGGGGAGACGAACGTTGTCTAGAAACAGATGCGTGCCATATCACCTCT
GCGCCACTTCCTGATGGGTTTCTTTTGCAATGCCTTCGGTCCCGTTCAGG
AGTGTACGACGAAGCTTTGATGGTGGCCCGGAACTTCCTCGCGTTCCGAC
GGGGGGCTGGATGGCCGCTTCGCCTCACAGCTCGCGACGTCAGTGGTGGA
CCCTTGGAGTCAGGGGCGCATTGGATTTTGCCGGGTAAGGACAAGGAGGG
CCGCGGGCTTTTTGTCTTCAACGTTGGTCGCATTGACACTCGCTTGGGAA
GTCTGGAGCGGTACCAGCAGATGGGAGCGTACCTGGTGGAGCGCCTGACC
CGAGAGGAGGAGGTGCAGCGGACGGGCCTGGTGATGGTAGTGAACATGGC
GCACGTGCCCTTGGGCCTATACCGGTCCTTAATCTCTCTTACTGACGCCA
AACGGGGGGTGCGCATGTGGCAAGACGCCTTCCCCAGTAAGCTCAAACGG
ATTTACGTGGTGGGGGGGTCAAGGTGGCTGCTGCAGGCGGTGCGCCTGGT
CGTGGCCATGCTCGGCAAGAAACTTCGAAAGCGCGTCCGTGTCCTGCCTC
ACCAAGAGGCTTTGCAGGAAGATATCGACGCCGAGCAGCTCCCTCCATGC
CTCGGCGGCCGCTTGGAGGGCTTCGACTGGGCGCAATGGTTGGTGGGGTT
GCCCAGCAAGTGGCGAATTGTACAGAAAGAAGGGCCTAGACGCTGGCAAG
TGAATGCATGCTCATGCGCATCTAAAATCCACGAGTGGGTCCCAGCAGGC
ATAAATAGCTCGTTTGTGGAAATGTCGATACCAATGTCAGCCTGTTTGAA
AGTCCATGTTACCTCGAAGAAAGCTGAGCGCCAATGAATGGGAAAACCCA
CGTCGCCCCCAACAGCGCCTGTCCCTCCGGATAAAAGTTTGCCCATATCA
CCATGCAAAGGACTTGTGATTCCTTCCGTGCCTTCTGCGCTCTTGCACTT
GTCTTCTCCTACGTCACGGGACGCTAAGACGAGCAACAGTTACGAGGGGA
CCCAAGGAGTGAAAGGATTGGAACACCGTCAACATCCAAAGCCGTCGGAC
GAATTTCCATCACTTTCTTCAGCAAACAGTGGAACCCCTTTAAGCCATGC
CAATTCCTCCTTTGATGATGACGTGCAACCACTTCCTCACTTATCGGACG
CGGAGGCCGACGCTCTTGTTGGGCGTATGCGCTCCGATTTGCGGGGAGAC
GAACGTTGTCTAGAAACAGATGCGTGCCATATCACCTCTGCGCCACTTCC
TGATGGGTTTCTTTTGCAATGCCTTCGGTCCCGTTCAGGAGTGTACGACG
AAGCTTTGATGGTGGCCCGGAACTTCCTCGCGTTCCGACGGGGGGCTGGA
TGGCCGCTTCGCCTCACAGCTCGCGACGTCAGTGGTGGACCCTTGGAGTC
AGGGGCGCATTGGATTTTGCCGGGTAAGGACAAGGAGGGCCGCGGGCTTT
TTGTCTTCAACGTTGGTCGCATTGACACTCGCTTGGGAAGTCTGGAGCGG
TACCAGCAGATGGGAGCGTACCTGGTGGAGCGCCTGACCCGAGAGGAGGA
GGTGCAGCGGACGGGCCTGGTGATGGTAGTGAACATGGCGCACGTGCCCT
TGGGCCTATACCGGTCCTTAATCTCTCTTACTGACGCCAAACGGGGGGTG
CGCATGTGGCAAGACGCCTTCCCCAGTAAGCTCAAACGGATTTACGTGGT
GGGGGGGTCAAGGTGGCTGCTGCAGGCGGTGCGCCTGGTCGTGGCCATGC
TCGGCAAGAAACTTCGAAAGCGCGTCCGTGTCCTGCCTCACCAAGAGGCT
TTGCAGGAAGATATCGACGCCGAGCAGCTCCCTCCATGCCTCGGCGGCCG
CTTGGAGGGCTTCGACTGGGCGCAATGG back to top
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