EWM23172.1, cds7502 (CDS) Nannochloropsis gaditana

Overview
NameEWM23172.1
Unique Namecds7502
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:151720..152760 -
Alignment locationCM002472.1:151429..151626 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23172.1
Productretinaldehyde binding protein 1
Orig transcript idgnl|cribi|Naga_100043g5.7255.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:151720..152760 -
CM002472.1supercontigCM002472.1:151429..151626 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR001251CRAL-TRIO_dom
IPR001071CRAL-bd_toc_tran
Homology
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|585104053|gb|EWM23172.1| (retinaldehyde binding protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 841.262 bits (2172), Expect = 0.000e+0
Identity = 412/412 (100.00%), Postives = 412/412 (100.00%), Query Frame = 0
Query:    1 MGKPTSPPTAPVPPDKSLPISPCKGLVIPSVPSALLHLSSPTSRDAKTSNSYEGTQGVKGLEHRQHPKPSDEFPSLSSANSGTPLSHANSSFDDDVQPLPHLSDAEADALVGRMRSDLRGDERCLETDACHITSAPLPDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEALQEDIDAEQLPPCLGGRLEGFDWAQWLVGLPSKWRIVQKEGPRRWQVNACSCASKIHEWVPAGINSSFVEMSIPMSACLKVHVTSKKAERQ 412
            MGKPTSPPTAPVPPDKSLPISPCKGLVIPSVPSALLHLSSPTSRDAKTSNSYEGTQGVKGLEHRQHPKPSDEFPSLSSANSGTPLSHANSSFDDDVQPLPHLSDAEADALVGRMRSDLRGDERCLETDACHITSAPLPDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEALQEDIDAEQLPPCLGGRLEGFDWAQWLVGLPSKWRIVQKEGPRRWQVNACSCASKIHEWVPAGINSSFVEMSIPMSACLKVHVTSKKAERQ
Sbjct:    1 MGKPTSPPTAPVPPDKSLPISPCKGLVIPSVPSALLHLSSPTSRDAKTSNSYEGTQGVKGLEHRQHPKPSDEFPSLSSANSGTPLSHANSSFDDDVQPLPHLSDAEADALVGRMRSDLRGDERCLETDACHITSAPLPDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEALQEDIDAEQLPPCLGGRLEGFDWAQWLVGLPSKWRIVQKEGPRRWQVNACSCASKIHEWVPAGINSSFVEMSIPMSACLKVHVTSKKAERQ 412          
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|873242078|emb|CEL92011.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 145.591 bits (366), Expect = 4.163e-37
Identity = 86/224 (38.39%), Postives = 123/224 (54.91%), Query Frame = 0
Query:  137 LPDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFN---VGRIDTRLG-----SLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQ--EALQED------IDAEQLPPCLGGRLEGFDW 344
            L D FL +CL  R     EA  VARNF  FR  AGWP R+   +     L SG HWILP +D +GR + V+N   +  I+ R+      S+E  Q+MG +L+E LT +    + G+ +V ++  + LGL R   +L D KRGV MW+++FP KL+R+YV+  S  +   V  V+ +L KK+R RV  +     +  Q D      +  + +PP LGG L  FDW
Sbjct:   46 LSDSFLRKCLMCRDWHQQEAATVARNFSRFRDSAGWPYRIECTEDVKAALLSGLHWILPTRDIDGRPMLVYNGKVLDSINARITPQQRISIESLQKMGCFLMELLTDDPACHQHGVALVFDVGGITLGLLRHF-TLADIKRGVMMWKESFPCKLRRVYVLRASPVISSIVHFVLGLLAKKIRDRVHFVKTDSPDDNQSDEPFWLFVRKDSVPPSLGGTLR-FDW 267          
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|299116985|emb|CBN75089.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 106.686 bits (265), Expect = 3.423e-21
Identity = 70/218 (32.11%), Postives = 113/218 (51.83%), Query Frame = 0
Query:  141 FLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEA-----LQEDIDAEQLPPCLG--GRLEGFD--WAQWLV 349
             L QCL   +     A+ V   F  FR   GW L L+A ++   PL S  H +   +D+ GRG+  F+ G++D        Y +M  Y+++ + ++EE+Q  GLV++V+   V  GL R   +L D KRG+RM   AFP+K+K I ++  +R +  A+++ + +L  K+R RV  +  + A      +E  D   +P  LG  G   G    W +W+V
Sbjct:  611 LLHQCLEYANYDMAGAIKVCSTFCKFRLQEGWDLVLSAPELET-PLRSRVHTLTTNRDRTGRGVLTFSPGKLDMDKAPPAAYHKMLCYVLQEVIKDEELQTKGLVLLVDARGVGFGLLRRF-TLADYKRGLRMLGGAFPAKVKAIRILHLNRVIGMALKIAMPLLSAKMRARVEFVTDERASDGSFTKELADPSSIPVELGIKGTWTGSRDFWDEWVV 826          
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|1129213353|gb|OLQ14269.1| (Alpha-tocopherol transfer protein [Symbiodinium microadriaticum])

HSP 1 Score: 94.7449 bits (234), Expect = 4.657e-19
Identity = 57/182 (31.32%), Postives = 97/182 (53.30%), Query Frame = 0
Query:  172 WPLRLTARDVSGGPLESGAHWILPGK------DKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEA--LQED-IDAEQLPPCLGGRLEGFDW 344
            W + + A +VS   L++G HW+LPGK      ++      VFN+ ++D     +E YQ++  +L+ER T   +VQ  G+ ++++   V      S++ L D KRG+  W  AFP +L+RI+++     +     LV   L  K+R R+  +  ++   ++ED +D   LP  LGG  + FDW
Sbjct:    6 WAMSIPASEVSRA-LKTGLHWLLPGKKDSKDPNEFAAACLVFNMAKLDPEACPIEEYQKLSLFLIERATDTLDVQTRGVALIIDFRGVQFTKLWSVLRLEDIKRGLGCWVGAFPCRLRRIWILDAPLPVRALTSLVKKFLTPKVRNRIDFVAPKDLQRIREDFVDCIVLPESLGGT-DPFDW 185          
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|551656755|ref|XP_005831150.1| (hypothetical protein GUITHDRAFT_153080 [Guillardia theta CCMP2712] >gi|428175279|gb|EKX44170.1| hypothetical protein GUITHDRAFT_153080 [Guillardia theta CCMP2712])

HSP 1 Score: 89.7373 bits (221), Expect = 5.908e-18
Identity = 45/125 (36.00%), Postives = 76/125 (60.80%), Query Frame = 0
Query:  225 MGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQ-EALQEDIDAEQLPPCLGGRLEGFDWAQWL 348
            MG++L+++   +E + + G+V V+++  V L +  +   + D KRG+ MW+DAFP KLK+IY+V     L   V +  ++L  K+R+RV ++    + L  DID+ +LPP LGG  E  DW  ++
Sbjct:    1 MGSFLMQKAIEKENIVKNGIVCVLDLQGVDLSI-TTKFGIADVKRGILMWKDAFPCKLKKIYLVNMGIILSTIVAMAKSILSSKIRERVVLVDKTFQQLHADIDSSRLPPSLGGNFE-LDWESYI 123          
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|954559126|ref|XP_014603285.1| (PREDICTED: clavesin-1-like [Polistes canadensis])

HSP 1 Score: 85.5001 bits (210), Expect = 6.245e-15
Identity = 69/248 (27.82%), Postives = 118/248 (47.58%), Query Frame = 0
Query:  102 LSDAEADALVGRMRSDLRGDERCLETDACHITSAPL------PDGFLLQCLRSRSGVYDEALMVARNFLAFRRGA-GWPLRLTARD-VSGGPLESGAHWILP--GKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEALQEDIDAEQLPPCLGGRL 339
            LS+         +R D    E+ LE     I   PL         FLL+ LR++      A  +   +L  R+    W   +   D ++   L++G  +ILP   +DK GR + +FN  RID+     E+  +  + ++E L  +EE Q  G   ++N + + +G + S+ SL D ++ +   Q+  P + KR Y+V    + ++   L +A L +KL+KR  +    E L++DID + LP   GG +
Sbjct:   12 LSEETKKIAKDELREDETIREQLLEQFRDWIKKHPLIKYCKTDSAFLLRFLRTKKFSLPLAQKLLERYLTIRQLYPTWFQNIVIDDQITNSVLDTG--YILPLFKRDKYGRQVILFNSERIDSYKYKSEQLVKAHSLVMEALLDDEENQVRGFTYIINESGINMG-HISMWSLIDVRKLLNCVQNGMPMRHKRTYIVNIPSYAVKFFELCIAYLNEKLKKRCSIHTSIEELKDDIDIKSLPVEYGGEV 256          
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|1042252457|ref|XP_017333034.1| (PREDICTED: retinaldehyde-binding protein 1 isoform X1 [Ictalurus punctatus])

HSP 1 Score: 84.7297 bits (208), Expect = 1.065e-14
Identity = 54/202 (26.73%), Postives = 95/202 (47.03%), Query Frame = 0
Query:  138 PDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQ-EALQEDIDAEQLPPCLGGR 338
            PD  LL+ +R+R    D A  + + ++ FRR           +     +E+G   IL  +DK+GR + +FN+   D    + +   +    ++E+L   EE Q  G V++ N     +  + + I  T+ K+ V M QD+FP++ K ++V+    +      +  + +  KL +RV V     +A   D  AE LPP   G+
Sbjct:   91 PDSLLLRFIRARKFDVDRAYELMKGYVRFRRDYPELFENLTPEAVRSTIEAGYPQILSTRDKDGRVVLLFNIENWDLEEVTFDETLRAYCVILEKLLENEETQINGFVLIENFKGFTMQ-HAAGIKHTELKKMVDMLQDSFPARFKAVHVIHQPWYFTTTYNVAKSFMKSKLLERVFVHGDDLDAFFRDFSAEILPPDFNGK 291          
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|1049232864|ref|XP_017554976.1| (PREDICTED: retinaldehyde-binding protein 1 [Pygocentrus nattereri])

HSP 1 Score: 83.9593 bits (206), Expect = 4.001e-14
Identity = 56/202 (27.72%), Postives = 95/202 (47.03%), Query Frame = 0
Query:  138 PDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQ-EALQEDIDAEQLPPCLGGR 338
            PD  LL+ +R+R      A  + + ++ FRR           +     +E+G   IL  +DK GR + +FN+   D    + +   +    ++E+L   EE Q  G V++ N     +  + S I  T+ K+ V M QD+FP++ K ++V+    +      +V   +  KL +RV V   + +A   D DAE LPP   G+
Sbjct:  144 PDSLLLRFIRARKFDVARAHELMKGYVRFRRDYPELFENMTPEAVRSTIEAGYPRILSTRDKYGRVVLLFNIENWDLEEVTFDETLRAYCVILEKLLENEETQINGFVLIENFKGFTMQ-HASGIKHTELKKMVDMLQDSFPARFKAVHVIHQPWYFTTTYNVVKPFMKSKLLERVFVHGDELDAYFRDFDAEILPPDFDGK 344          
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|530606506|ref|XP_005294953.1| (PREDICTED: retinaldehyde-binding protein 1 [Chrysemys picta bellii])

HSP 1 Score: 81.6481 bits (200), Expect = 1.187e-13
Identity = 57/220 (25.91%), Postives = 101/220 (45.91%), Query Frame = 0
Query:  128 DACHITSAPLP---DGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQ-EALQEDIDAEQLPPCLGGRLEGFD 343
            D C   +  +    D F L+ +R+R    + A  + + ++ FR+           +     +E+G   IL  +DK GR + +FN+   D    + +   +    ++E+L   EE Q  GL ++ N     +    S I  ++ K+ V M QD+FP++ K +Y +    +      +V   L  KL +RV V   + E+  ++IDA+ LP   GG L  +D
Sbjct:   79 DVCKAVAEKVKGKDDSFFLRFIRARKFDVNRAYELLKGYVNFRQQYPELFDNLTPEAVRSTIEAGYPGILASRDKYGRVVMLFNIENWDYEEITFDEILRAYCVILEKLLENEETQINGLCIIENFKGFTMQ-QASGIKPSELKKMVDMLQDSFPARFKAVYFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGEELESFYQEIDADILPADFGGNLPKYD 297          
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|642099000|emb|CDQ77778.1| (unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 82.0333 bits (201), Expect = 1.694e-13
Identity = 56/204 (27.45%), Postives = 94/204 (46.08%), Query Frame = 0
Query:  138 PDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEALQ---EDIDAEQLPPCLGGR 338
            PD  LL+ +R+R      A  + + ++ FRR           +     +E+G   +LP +DK GR + +FN+   D    + +   +    ++E+L   EE Q  G V++ N     +  + S I  T+ K+ V M QD+FP++ K I+V     +      +V   +  KL +RV V  H + L     D DA+ LP    G+
Sbjct:  157 PDSLLLRFIRARKFDVARAHELLKGYVRFRRDYPELFENLTPEAVRSTIEAGYPVVLPSRDKYGRVVLLFNIENWDLEEVTFDETLRAYCVILEKLLENEETQINGFVLIENFKGFTMQ-HASGIKPTELKKMVDMMQDSFPARFKAIHVTHQPWYFTTTYNVVKPFMKSKLLERVFV--HGDELDGYLNDFDADILPADFDGK 357          
The following BLAST results are available for this feature:
BLAST of EWM23172.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104053|gb|EWM23172.1|0.000e+0100.00retinaldehyde binding protein 1 [Nannochloropsis g... [more]
gi|873242078|emb|CEL92011.1|4.163e-3738.39unnamed protein product [Vitrella brassicaformis C... [more]
gi|299116985|emb|CBN75089.1|3.423e-2132.11conserved unknown protein [Ectocarpus siliculosus][more]
gi|1129213353|gb|OLQ14269.1|4.657e-1931.32Alpha-tocopherol transfer protein [Symbiodinium mi... [more]
gi|551656755|ref|XP_005831150.1|5.908e-1836.00hypothetical protein GUITHDRAFT_153080 [Guillardia... [more]
gi|954559126|ref|XP_014603285.1|6.245e-1527.82PREDICTED: clavesin-1-like [Polistes canadensis][more]
gi|1042252457|ref|XP_017333034.1|1.065e-1426.73PREDICTED: retinaldehyde-binding protein 1 isoform... [more]
gi|1049232864|ref|XP_017554976.1|4.001e-1427.72PREDICTED: retinaldehyde-binding protein 1 [Pygoce... [more]
gi|530606506|ref|XP_005294953.1|1.187e-1325.91PREDICTED: retinaldehyde-binding protein 1 [Chryse... [more]
gi|642099000|emb|CDQ77778.1|1.694e-1327.45unnamed protein product [Oncorhynchus mykiss][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7520rna7520Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications