EWM23172.1, cds7502 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|585104053|gb|EWM23172.1| (retinaldehyde binding protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 841.262 bits (2172), Expect = 0.000e+0 Identity = 412/412 (100.00%), Postives = 412/412 (100.00%), Query Frame = 0 Query: 1 MGKPTSPPTAPVPPDKSLPISPCKGLVIPSVPSALLHLSSPTSRDAKTSNSYEGTQGVKGLEHRQHPKPSDEFPSLSSANSGTPLSHANSSFDDDVQPLPHLSDAEADALVGRMRSDLRGDERCLETDACHITSAPLPDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEALQEDIDAEQLPPCLGGRLEGFDWAQWLVGLPSKWRIVQKEGPRRWQVNACSCASKIHEWVPAGINSSFVEMSIPMSACLKVHVTSKKAERQ 412 MGKPTSPPTAPVPPDKSLPISPCKGLVIPSVPSALLHLSSPTSRDAKTSNSYEGTQGVKGLEHRQHPKPSDEFPSLSSANSGTPLSHANSSFDDDVQPLPHLSDAEADALVGRMRSDLRGDERCLETDACHITSAPLPDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEALQEDIDAEQLPPCLGGRLEGFDWAQWLVGLPSKWRIVQKEGPRRWQVNACSCASKIHEWVPAGINSSFVEMSIPMSACLKVHVTSKKAERQ Sbjct: 1 MGKPTSPPTAPVPPDKSLPISPCKGLVIPSVPSALLHLSSPTSRDAKTSNSYEGTQGVKGLEHRQHPKPSDEFPSLSSANSGTPLSHANSSFDDDVQPLPHLSDAEADALVGRMRSDLRGDERCLETDACHITSAPLPDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEALQEDIDAEQLPPCLGGRLEGFDWAQWLVGLPSKWRIVQKEGPRRWQVNACSCASKIHEWVPAGINSSFVEMSIPMSACLKVHVTSKKAERQ 412
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|873242078|emb|CEL92011.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 145.591 bits (366), Expect = 4.163e-37 Identity = 86/224 (38.39%), Postives = 123/224 (54.91%), Query Frame = 0 Query: 137 LPDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFN---VGRIDTRLG-----SLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQ--EALQED------IDAEQLPPCLGGRLEGFDW 344 L D FL +CL R EA VARNF FR AGWP R+ + L SG HWILP +D +GR + V+N + I+ R+ S+E Q+MG +L+E LT + + G+ +V ++ + LGL R +L D KRGV MW+++FP KL+R+YV+ S + V V+ +L KK+R RV + + Q D + + +PP LGG L FDW Sbjct: 46 LSDSFLRKCLMCRDWHQQEAATVARNFSRFRDSAGWPYRIECTEDVKAALLSGLHWILPTRDIDGRPMLVYNGKVLDSINARITPQQRISIESLQKMGCFLMELLTDDPACHQHGVALVFDVGGITLGLLRHF-TLADIKRGVMMWKESFPCKLRRVYVLRASPVISSIVHFVLGLLAKKIRDRVHFVKTDSPDDNQSDEPFWLFVRKDSVPPSLGGTLR-FDW 267
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|299116985|emb|CBN75089.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 106.686 bits (265), Expect = 3.423e-21 Identity = 70/218 (32.11%), Postives = 113/218 (51.83%), Query Frame = 0 Query: 141 FLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEA-----LQEDIDAEQLPPCLG--GRLEGFD--WAQWLV 349 L QCL + A+ V F FR GW L L+A ++ PL S H + +D+ GRG+ F+ G++D Y +M Y+++ + ++EE+Q GLV++V+ V GL R +L D KRG+RM AFP+K+K I ++ +R + A+++ + +L K+R RV + + A +E D +P LG G G W +W+V Sbjct: 611 LLHQCLEYANYDMAGAIKVCSTFCKFRLQEGWDLVLSAPELET-PLRSRVHTLTTNRDRTGRGVLTFSPGKLDMDKAPPAAYHKMLCYVLQEVIKDEELQTKGLVLLVDARGVGFGLLRRF-TLADYKRGLRMLGGAFPAKVKAIRILHLNRVIGMALKIAMPLLSAKMRARVEFVTDERASDGSFTKELADPSSIPVELGIKGTWTGSRDFWDEWVV 826
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|1129213353|gb|OLQ14269.1| (Alpha-tocopherol transfer protein [Symbiodinium microadriaticum]) HSP 1 Score: 94.7449 bits (234), Expect = 4.657e-19 Identity = 57/182 (31.32%), Postives = 97/182 (53.30%), Query Frame = 0 Query: 172 WPLRLTARDVSGGPLESGAHWILPGK------DKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEA--LQED-IDAEQLPPCLGGRLEGFDW 344 W + + A +VS L++G HW+LPGK ++ VFN+ ++D +E YQ++ +L+ER T +VQ G+ ++++ V S++ L D KRG+ W AFP +L+RI+++ + LV L K+R R+ + ++ ++ED +D LP LGG + FDW Sbjct: 6 WAMSIPASEVSRA-LKTGLHWLLPGKKDSKDPNEFAAACLVFNMAKLDPEACPIEEYQKLSLFLIERATDTLDVQTRGVALIIDFRGVQFTKLWSVLRLEDIKRGLGCWVGAFPCRLRRIWILDAPLPVRALTSLVKKFLTPKVRNRIDFVAPKDLQRIREDFVDCIVLPESLGGT-DPFDW 185
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|551656755|ref|XP_005831150.1| (hypothetical protein GUITHDRAFT_153080 [Guillardia theta CCMP2712] >gi|428175279|gb|EKX44170.1| hypothetical protein GUITHDRAFT_153080 [Guillardia theta CCMP2712]) HSP 1 Score: 89.7373 bits (221), Expect = 5.908e-18 Identity = 45/125 (36.00%), Postives = 76/125 (60.80%), Query Frame = 0 Query: 225 MGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQ-EALQEDIDAEQLPPCLGGRLEGFDWAQWL 348 MG++L+++ +E + + G+V V+++ V L + + + D KRG+ MW+DAFP KLK+IY+V L V + ++L K+R+RV ++ + L DID+ +LPP LGG E DW ++ Sbjct: 1 MGSFLMQKAIEKENIVKNGIVCVLDLQGVDLSI-TTKFGIADVKRGILMWKDAFPCKLKKIYLVNMGIILSTIVAMAKSILSSKIRERVVLVDKTFQQLHADIDSSRLPPSLGGNFE-LDWESYI 123
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|954559126|ref|XP_014603285.1| (PREDICTED: clavesin-1-like [Polistes canadensis]) HSP 1 Score: 85.5001 bits (210), Expect = 6.245e-15 Identity = 69/248 (27.82%), Postives = 118/248 (47.58%), Query Frame = 0 Query: 102 LSDAEADALVGRMRSDLRGDERCLETDACHITSAPL------PDGFLLQCLRSRSGVYDEALMVARNFLAFRRGA-GWPLRLTARD-VSGGPLESGAHWILP--GKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEALQEDIDAEQLPPCLGGRL 339 LS+ +R D E+ LE I PL FLL+ LR++ A + +L R+ W + D ++ L++G +ILP +DK GR + +FN RID+ E+ + + ++E L +EE Q G ++N + + +G + S+ SL D ++ + Q+ P + KR Y+V + ++ L +A L +KL+KR + E L++DID + LP GG + Sbjct: 12 LSEETKKIAKDELREDETIREQLLEQFRDWIKKHPLIKYCKTDSAFLLRFLRTKKFSLPLAQKLLERYLTIRQLYPTWFQNIVIDDQITNSVLDTG--YILPLFKRDKYGRQVILFNSERIDSYKYKSEQLVKAHSLVMEALLDDEENQVRGFTYIINESGINMG-HISMWSLIDVRKLLNCVQNGMPMRHKRTYIVNIPSYAVKFFELCIAYLNEKLKKRCSIHTSIEELKDDIDIKSLPVEYGGEV 256
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|1042252457|ref|XP_017333034.1| (PREDICTED: retinaldehyde-binding protein 1 isoform X1 [Ictalurus punctatus]) HSP 1 Score: 84.7297 bits (208), Expect = 1.065e-14 Identity = 54/202 (26.73%), Postives = 95/202 (47.03%), Query Frame = 0 Query: 138 PDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQ-EALQEDIDAEQLPPCLGGR 338 PD LL+ +R+R D A + + ++ FRR + +E+G IL +DK+GR + +FN+ D + + + ++E+L EE Q G V++ N + + + I T+ K+ V M QD+FP++ K ++V+ + + + + KL +RV V +A D AE LPP G+ Sbjct: 91 PDSLLLRFIRARKFDVDRAYELMKGYVRFRRDYPELFENLTPEAVRSTIEAGYPQILSTRDKDGRVVLLFNIENWDLEEVTFDETLRAYCVILEKLLENEETQINGFVLIENFKGFTMQ-HAAGIKHTELKKMVDMLQDSFPARFKAVHVIHQPWYFTTTYNVAKSFMKSKLLERVFVHGDDLDAFFRDFSAEILPPDFNGK 291
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|1049232864|ref|XP_017554976.1| (PREDICTED: retinaldehyde-binding protein 1 [Pygocentrus nattereri]) HSP 1 Score: 83.9593 bits (206), Expect = 4.001e-14 Identity = 56/202 (27.72%), Postives = 95/202 (47.03%), Query Frame = 0 Query: 138 PDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQ-EALQEDIDAEQLPPCLGGR 338 PD LL+ +R+R A + + ++ FRR + +E+G IL +DK GR + +FN+ D + + + ++E+L EE Q G V++ N + + S I T+ K+ V M QD+FP++ K ++V+ + +V + KL +RV V + +A D DAE LPP G+ Sbjct: 144 PDSLLLRFIRARKFDVARAHELMKGYVRFRRDYPELFENMTPEAVRSTIEAGYPRILSTRDKYGRVVLLFNIENWDLEEVTFDETLRAYCVILEKLLENEETQINGFVLIENFKGFTMQ-HASGIKHTELKKMVDMLQDSFPARFKAVHVIHQPWYFTTTYNVVKPFMKSKLLERVFVHGDELDAYFRDFDAEILPPDFDGK 344
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|530606506|ref|XP_005294953.1| (PREDICTED: retinaldehyde-binding protein 1 [Chrysemys picta bellii]) HSP 1 Score: 81.6481 bits (200), Expect = 1.187e-13 Identity = 57/220 (25.91%), Postives = 101/220 (45.91%), Query Frame = 0 Query: 128 DACHITSAPLP---DGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQ-EALQEDIDAEQLPPCLGGRLEGFD 343 D C + + D F L+ +R+R + A + + ++ FR+ + +E+G IL +DK GR + +FN+ D + + + ++E+L EE Q GL ++ N + S I ++ K+ V M QD+FP++ K +Y + + +V L KL +RV V + E+ ++IDA+ LP GG L +D Sbjct: 79 DVCKAVAEKVKGKDDSFFLRFIRARKFDVNRAYELLKGYVNFRQQYPELFDNLTPEAVRSTIEAGYPGILASRDKYGRVVMLFNIENWDYEEITFDEILRAYCVILEKLLENEETQINGLCIIENFKGFTMQ-QASGIKPSELKKMVDMLQDSFPARFKAVYFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGEELESFYQEIDADILPADFGGNLPKYD 297
BLAST of EWM23172.1 vs. NCBI_GenBank
Match: gi|642099000|emb|CDQ77778.1| (unnamed protein product [Oncorhynchus mykiss]) HSP 1 Score: 82.0333 bits (201), Expect = 1.694e-13 Identity = 56/204 (27.45%), Postives = 94/204 (46.08%), Query Frame = 0 Query: 138 PDGFLLQCLRSRSGVYDEALMVARNFLAFRRGAGWPLRLTARDVSGGPLESGAHWILPGKDKEGRGLFVFNVGRIDTRLGSLERYQQMGAYLVERLTREEEVQRTGLVMVVNMAHVPLGLYRSLISLTDAKRGVRMWQDAFPSKLKRIYVVGGSRWLLQAVRLVVAMLGKKLRKRVRVLPHQEALQ---EDIDAEQLPPCLGGR 338 PD LL+ +R+R A + + ++ FRR + +E+G +LP +DK GR + +FN+ D + + + ++E+L EE Q G V++ N + + S I T+ K+ V M QD+FP++ K I+V + +V + KL +RV V H + L D DA+ LP G+ Sbjct: 157 PDSLLLRFIRARKFDVARAHELLKGYVRFRRDYPELFENLTPEAVRSTIEAGYPVVLPSRDKYGRVVLLFNIENWDLEEVTFDETLRAYCVILEKLLENEETQINGFVLIENFKGFTMQ-HASGIKPTELKKMVDMMQDSFPARFKAIHVTHQPWYFTTTYNVVKPFMKSKLLERVFV--HGDELDGYLNDFDADILPADFDGK 357 The following BLAST results are available for this feature:
BLAST of EWM23172.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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