rna7513, rna7513 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7513
Unique Name	rna7513
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	970
Alignment location	CM002472.1:133910..135979 -

Link to JBrowse

Properties


Property Name	Value
Product	apurinic endonuclease-redox protein
Orig transcript id	gnl\|cribi\|Naga_100484g4.2346.mrna
Orig protein id	gnl\|cribi\|Naga_100484g4.2346
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:133910..135979 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100484g4	gene7273	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7513	rna7513-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23176.1	cds7495	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:133910..135979-
coding sequence from alignment at CM002472.1:133910..135979-

mRNA sequence

>rna7513 ID=rna7513|Name=rna7513|organism=Nannochloropsis gaditana|type=mRNA|length=970bp
AGAGGAGTACCCCTTCAGCATTCGAGGACCAGACATACTCTACTCACTCT
TACCACGGCCATCGCCGGCACACAACACATTTCCATTGTCATGCTGCTTT
CTAGGCATCAAAATGTACAATCGTCAAGTCATTTTTGCCTTATCCCAGCT
GCCGCGCCGGCAGATCTTCCTCCTCATCTGCCTCATCTCATCGGCCCTGG
CCTTCGTAGGGCCTGCGACCGTGGTCCTACACAATCAATCTCCACATTTG
CAAGGGCGGGATGGCATTCACGATGCTACGGCAGCCACGTCGACGCCTCC
AAGGAAAGGAGCACCGCGCATGTCGGCTTATTCAGAGCCTGTCCCGCAGG
CCACAGACCCGCCTTTCCGCATCGGCCACGGTTTTGACATCCATAGACTG
GAAGCGGGGCTGCCATTGGTGATAGGGGGCGTCAAAATCGAGTTTGATAA
AGGGTCGGCCGCGCACTCGGACGGAGATGCCTTGTACCACTCGGTGACGG
ACGCGATTCTGGGAGCCATCGGCCTGCCCGACATCGGACAACTCTTCCCG
GACACCGACCCGAAATGGAAGGGGGCAGACTCGGCGCAGTTCATGAGGGA
GGCGCGCCGGCTAATGACGCTGAGAGGCTACCGCATCGGGAATGTGGACG
TGACCTTGATCTTGCAGAAGCCCAAGGTGAAGGACATCAAACCGCAGATG
AAGGCGAATCTGGTGGAGCTGCTAGGGACCGAGGAGAGCCGCGTGAACAT
CAAGGCGCGCACACACGAGCACGTGGACAGCGTGGGCGAGTCTAGGAGCT
GGGTGGTGCACGTGGTCATACTCTTGGAGAAGGTCTGAAGGGCAAGGAAA
GGGTTCAGCGTGCCGGGGGTGACGGTGCTTTGTTTTCTTTGGACACATTA
GCACCTTATAATCCATACCAAAGGCACACACCGTCAAAACCCTCGCTTTC
CGCCTCCTCCTTGCTTTCCC

protein sequence of rna7513

>rna7513-protein ID=rna7513-protein|Name=rna7513|organism=Nannochloropsis gaditana|type=polypeptide|length=565bp
MLLALLTLPVQLAFMLNSPTIIHVFGLNTCVNLVSGLCFLPGPLSRGCSS
KALMTSRHSSSRFRESFGEFSSTVRTQKWKSSRSISTRTSTSVFSSSGAS
LHMSPSEPEGARDPLKKRGRPAKGPKPSAQDAAMVAGAESSARRVPLHGD
QTRKEVASVGRGREPRSRKAAASPEAMNGTDPSSSTLSPPKKARKGRSRK
GDDAVSQGTAVSTERLKDAAAPTSAGSSAVPKSKRPPLQRATIPRGLTPR
LEDGPPVSSSSSSSSSRPRRRLRLLSWNVAGLRGLLKKGETAAEAFRSLL
LRERPDVLCLQETKLQEEHVAEVAAALRELHLPTFEGNWHCSTAKKGYSG
TSVLVSESAGLAVGPGGVTCGMEGEGDGEGEGRVISVDLGAFTLVNVYTP
NSGEGLRRLAFRTQAWDRAFERHLEALQGAGDGNRAVLCCGDLNVAHLDA
DFYNPGEARMAKAAGTTPEERASFGRLLEGAGMVDSFRHYHPDVTGCYSY
WSMRAGNRPYNRGMRLDYFLASKNMLRGGDEGGGVPRLLDSFILDQDPAV
SKLSDHAPVGVLLEV

mRNA from alignment at CM002472.1:133910..135979-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7513 ID=rna7513|Name=rna7513|organism=Nannochloropsis gaditana|type=mRNA|length=2070bp|location=Sequence derived from alignment at CM002472.1:133910..135979- (Nannochloropsis gaditana)
TTGAAACAGAGGACTGCAACTGGATTGCAACACGGAGGTACTACCGGGGA
GGGGGGGAAATTGCGAAACTAGAAGTAAAAGGTAGTCTTTGCAGACAGCA
TCAGGCCTCGGTACCTCTCCATGCTCCTTGCCCTCCTGACTCTGCCTGTC
CAGCTTGCCTTCATGCTAAACAGCCCCACTATCATCCACGTCTTTGGTCT
AAACACCTGCGTGAATTTGGTATCTGGTTTGTGCTTTTTGCCAGGCCCCT
TGAGCAGAGGCTGTAGCTCAAAAGCTCTCATGACCTCACGGCATTCCTCA
TCTCGTTTTCGGGAGTCTTTTGGTGAATTTTCATCCACTGTACGTACACA
AAAATGGAAAAGCAGTAGATCAATAAGCACCAGGACTTCCACAAGCGTTT
TCTCGGTAAGTTGTGGACATGGGGGGGGCTCGCGGGCTTGGTCGAGGGGC
ACCACCTCAGGCGCCTAGCACCGTCAGGACAGCACTCAGTGATGCGACCG
GCAAAGCTTGCCGCGTCGGTAAGATGTTTGTCATGAGTGCGCACGTGCTG
ATATTGGGCCTCGCAAACTTGCACAGAGTTCCGGCGCCTCCCTCCACATG
TCTCCCTCGGAGCCGGAGGGGGCCCGTGACCCGTTGAAGAAGCGGGGAAG
GCCGGCCAAGGGCCCAAAGCCGTCGGCTCAAGACGCCGCGATGGTCGCGG
GGGCAGAGTCAAGTGCGCGTCGAGTGCCTCTCCATGGGGATCAAACGAGG
AAAGAGGTGGCTTCGGTGGGAAGAGGCAGGGAGCCACGCTCACGAAAGGC
AGCTGCGAGCCCGGAGGCGATGAATGGCACCGATCCCTCCTCTTCCACCC
TCTCCCCTCCTAAAAAAGCGCGGAAAGGACGCTCGAGAAAAGGGGACGAT
GCCGTCTCGCAAGGCACGGCTGTATCGACGGAAAGATTGAAGGACGCGGC
CGCTCCTACTTCCGCCGGCAGCTCCGCCGTCCCCAAGAGCAAACGCCCCC
CCCTTCAACGGGCAACCATCCCCCGAGGCCTCACTCCGCGACTAGAGGAC
GGCCCGCCCGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCCGTCCCAGGCG
TCGCCTCCGCCTCCTCTCCTGGAACGTGGCCGGCCTCCGCGGCTTGTTGA
AGAAAGGCGAGACCGCCGCCGAGGCCTTCCGCTCCCTCCTCCTCCGCGAG
CGCCCCGACGTGCTCTGCCTCCAGGAGACCAAGCTGCAGGAGGAGCACGT
GGCCGAGGTGGCGGCCGCGCTCCGGGAGCTGCACCTGCCCACGTTCGAGG
GGAACTGGCACTGCTCCACCGCCAAGAAGGGCTACTCGGGCACCTCCGTG
CTGGTCTCGGAGTCGGCGGGGCTGGCGGTGGGGCCGGGGGGGGTGACGTG
CGGCATGGAGGGGGAGGGAGACGGCGAGGGCGAGGGGCGGGTCATCTCGG
TGGACTTGGGCGCCTTCACGCTCGTGAATGTCTACACACCCAACAGCGGG
GAGGGCTTACGGCGCCTGGCGTTTCGGACCCAGGCGTGGGATCGGGCGTT
CGAGCGGCATTTGGAGGCCTTGCAAGGGGCAGGCGACGGGAACCGGGCCG
TGCTCTGCTGCGGCGACTTGAACGTGGCGCATCTCGACGCGGACTTCTAC
AATCCGGGGGAGGCGCGCATGGCCAAAGCGGCGGGGACGACGCCGGAGGA
GCGGGCCTCGTTCGGGCGGCTCCTGGAAGGCGCGGGCATGGTCGACTCCT
TTCGGCACTACCACCCCGACGTGACCGGTTGCTACTCCTACTGGTCCATG
CGCGCAGGGAACCGGCCCTACAACCGAGGCATGCGCCTTGATTACTTTCT
GGCGAGTAAAAACATGCTGCGGGGAGGGGATGAGGGTGGAGGGGTGCCGC
GGCTGCTCGATTCTTTTATATTGGATCAGGACCCTGCCGTATCCAAGTTG
AGTGACCATGCCCCTGTGGGCGTGCTGCTGGAAGTGTGAAGCGCGCACGT
CGGGGTCCTGACACTCTCAGAATGCAAAATGCAAAGCATAACCAAACAAA
TTGTACAATCATACGCAACG

Coding sequence (CDS) from alignment at CM002472.1:133910..135979-

>rna7513 ID=rna7513|Name=rna7513|organism=Nannochloropsis gaditana|type=CDS|length=3396bp|location=Sequence derived from alignment at CM002472.1:133910..135979- (Nannochloropsis gaditana)
AGTTCCGGCGCCTCCCTCCACATGTCTCCCTCGGAGCCGGAGGGGGCCCG
TGACCCGTTGAAGAAGCGGGGAAGGCCGGCCAAGGGCCCAAAGCCGTCGG
CTCAAGACGCCGCGATGGTCGCGGGGGCAGAGTCAAGTGCGCGTCGAGTG
CCTCTCCATGGGGATCAAACGAGGAAAGAGGTGGCTTCGGTGGGAAGAGG
CAGGGAGCCACGCTCACGAAAGGCAGCTGCGAGCCCGGAGGCGATGAATG
GCACCGATCCCTCCTCTTCCACCCTCTCCCCTCCTAAAAAAGCGCGGAAA
GGACGCTCGAGAAAAGGGGACGATGCCGTCTCGCAAGGCACGGCTGTATC
GACGGAAAGATTGAAGGACGCGGCCGCTCCTACTTCCGCCGGCAGCTCCG
CCGTCCCCAAGAGCAAACGCCCCCCCCTTCAACGGGCAACCATCCCCCGA
GGCCTCACTCCGCGACTAGAGGACGGCCCGCCCGTCTCCTCCTCCTCCTC
CTCCTCCTCCTCCCGTCCCAGGCGTCGCCTCCGCCTCCTCTCCTGGAACG
TGGCCGGCCTCCGCGGCTTGTTGAAGAAAGGCGAGACCGCCGCCGAGGCC
TTCCGCTCCCTCCTCCTCCGCGAGCGCCCCGACGTGCTCTGCCTCCAGGA
GACCAAGCTGCAGGAGGAGCACGTGGCCGAGGTGGCGGCCGCGCTCCGGG
AGCTGCACCTGCCCACGTTCGAGGGGAACTGGCACTGCTCCACCGCCAAG
AAGGGCTACTCGGGCACCTCCGTGCTGGTCTCGGAGTCGGCGGGGCTGGC
GGTGGGGCCGGGGGGGGTGACGTGCGGCATGGAGGGGGAGGGAGACGGCG
AGGGCGAGGGGCGGGTCATCTCGGTGGACTTGGGCGCCTTCACGCTCGTG
AATGTCTACACACCCAACAGCGGGGAGGGCTTACGGCGCCTGGCGTTTCG
GACCCAGGCGTGGGATCGGGCGTTCGAGCGGCATTTGGAGGCCTTGCAAG
GGGCAGGCGACGGGAACCGGGCCGTGCTCTGCTGCGGCGACTTGAACGTG
GCGCATCTCGACGCGGACTTCTACAATCCGGGGGAGGCGCGCATGGCCAA
AGCGGCGGGGACGACGCCGGAGGAGCGGGCCTCGTTCGGGCGGCTCCTGG
AAGGCGCGGGCATGGTCGACTCCTTTCGGCACTACCACCCCGACGTGACC
GGTTGCTACTCCTACTGGTCCATGCGCGCAGGGAACCGGCCCTACAACCG
AGGCATGCGCCTTGATTACTTTCTGGCGAGTAAAAACATGCTGCGGGGAG
GGGATGAGGGTGGAGGGGTGCCGCGGCTGCTCGATTCTTTTATATTGGAT
CAGGACCCTGCCGTATCCAAGTTGAGTGACCATGCCCCTGTGGGCGTGCT
GCTGGAAGTGTGAATGCTCCTTGCCCTCCTGACTCTGCCTGTCCAGCTTG
CCTTCATGCTAAACAGCCCCACTATCATCCACGTCTTTGGTCTAAACACC
TGCGTGAATTTGGTATCTGGTTTGTGCTTTTTGCCAGGCCCCTTGAGCAG
AGGCTGTAGCTCAAAAGCTCTCATGACCTCACGGCATTCCTCATCTCGTT
TTCGGGAGTCTTTTGGTGAATTTTCATCCACTGTACGTACACAAAAATGG
AAAAGCAGTAGATCAATAAGCACCAGGACTTCCACAAGCGTTTTCTCGAG
TTCCGGCGCCTCCCTCCACATGTCTCCCTCGGAGCCGGAGGGGGCCCGTG
ACCCGTTGAAGAAGCGGGGAAGGCCGGCCAAGGGCCCAAAGCCGTCGGCT
CAAGACGCCGCGATGGTCGCGGGGGCAGAGTCAAGTGCGCGTCGAGTGCC
TCTCCATGGGGATCAAACGAGGAAAGAGGTGGCTTCGGTGGGAAGAGGCA
GGGAGCCACGCTCACGAAAGGCAGCTGCGAGCCCGGAGGCGATGAATGGC
ACCGATCCCTCCTCTTCCACCCTCTCCCCTCCTAAAAAAGCGCGGAAAGG
ACGCTCGAGAAAAGGGGACGATGCCGTCTCGCAAGGCACGGCTGTATCGA
CGGAAAGATTGAAGGACGCGGCCGCTCCTACTTCCGCCGGCAGCTCCGCC
GTCCCCAAGAGCAAACGCCCCCCCCTTCAACGGGCAACCATCCCCCGAGG
CCTCACTCCGCGACTAGAGGACGGCCCGCCCGTCTCCTCCTCCTCCTCCT
CCTCCTCCTCCCGTCCCAGGCGTCGCCTCCGCCTCCTCTCCTGGAACGTG
GCCGGCCTCCGCGGCTTGTTGAAGAAAGGCGAGACCGCCGCCGAGGCCTT
CCGCTCCCTCCTCCTCCGCGAGCGCCCCGACGTGCTCTGCCTCCAGGAGA
CCAAGCTGCAGGAGGAGCACGTGGCCGAGGTGGCGGCCGCGCTCCGGGAG
CTGCACCTGCCCACGTTCGAGGGGAACTGGCACTGCTCCACCGCCAAGAA
GGGCTACTCGGGCACCTCCGTGCTGGTCTCGGAGTCGGCGGGGCTGGCGG
TGGGGCCGGGGGGGGTGACGTGCGGCATGGAGGGGGAGGGAGACGGCGAG
GGCGAGGGGCGGGTCATCTCGGTGGACTTGGGCGCCTTCACGCTCGTGAA
TGTCTACACACCCAACAGCGGGGAGGGCTTACGGCGCCTGGCGTTTCGGA
CCCAGGCGTGGGATCGGGCGTTCGAGCGGCATTTGGAGGCCTTGCAAGGG
GCAGGCGACGGGAACCGGGCCGTGCTCTGCTGCGGCGACTTGAACGTGGC
GCATCTCGACGCGGACTTCTACAATCCGGGGGAGGCGCGCATGGCCAAAG
CGGCGGGGACGACGCCGGAGGAGCGGGCCTCGTTCGGGCGGCTCCTGGAA
GGCGCGGGCATGGTCGACTCCTTTCGGCACTACCACCCCGACGTGACCGG
TTGCTACTCCTACTGGTCCATGCGCGCAGGGAACCGGCCCTACAACCGAG
GCATGCGCCTTGATTACTTTCTGGCGAGTAAAAACATGCTGCGGGGAGGG
GATGAGGGTGGAGGGGTGCCGCGGCTGCTCGATTCTTTTATATTGGATCA
GGACCCTGCCGTATCCAAGTTGAGTGACCATGCCCCTGTGGGCGTGCTGC
TGGAAGTGTGAATGCTCCTTGCCCTCCTGACTCTGCCTGTCCAGCTTGCC
TTCATGCTAAACAGCCCCACTATCATCCACGTCTTTGGTCTAAACACCTG
CGTGAATTTGGTATCTGGTTTGTGCTTTTTGCCAGGCCCCTTGAGCAGAG
GCTGTAGCTCAAAAGCTCTCATGACCTCACGGCATTCCTCATCTCGTTTT
CGGGAGTCTTTTGGTGAATTTTCATCCACTGTACGTACACAAAAATGGAA
AAGCAGTAGATCAATAAGCACCAGGACTTCCACAAGCGTTTTCTCG

Synonyms

Publications