rna7511, rna7511 (mRNA) Nannochloropsis gaditana

Overview
Namerna7511
Unique Namerna7511
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1484
Alignment locationCM002472.1:131126..132615 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100484g6.2348.mrna
Orig protein idgnl|cribi|Naga_100484g6.2348
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:131126..132615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100484g6gene7271Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7511rna7511-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23178.1cds7493Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7511 ID=rna7511|Name=rna7511|organism=Nannochloropsis gaditana|type=mRNA|length=1484bp
AGCGTATATGGCAGCCTCCATCTAACTCAGCGTCTCACCATGACGATTTT
TTTATGGCACACCGACAACGTCACCTCCGACTCACCCATGAAGCCCCTTC
ATTTTTCCCCTCACACGGCCCCCTCGGTCTGCCTCAAGGGACGTCAGGGA
ACGAGGCATATCGAGTAAAGCGGCATGTCCAGTGCGTAGCGAGCCAGTTG
TGGACGGGGCAGGACGGTTGACTGGGAAATGGCGCACCCTCCCAGCACTG
TCCCCCCCTTCTTGGGAGTTTCGCCGCCCGTCAACGTGGACCCCCCCACG
GAGGCTGAAAGGGAGGCGACTCGGCATCTGGAGGCATTTCTGAAGGAAGC
GGGCTCGTATGAGAGTGAAGGAATGTCCGCGGCCCGTGTAAAGGTCATTG
CCAAGCTGCAAAGGATGGCGGAGGCATGGTGCGAGGACCTGCATGGGAAA
GCAGGCTCGTGTCCGGCGGCCGCGCCAAGGAGTGACGCCCTCTCTCGCCT
CGCCACACAGGCCGCGTCCAACGACCGAGATGGCTCCACAGCGCACCCTC
CTGCGGCCTCCCTCCCCTCTCTCCCCTCCGAGCCCCGCCAAGCCTCCCAC
CCCAAGCCCCTCCTCCTCCCCTTCGGCTCCTACCGCCTGGACTGCCACGA
CCCGACCTCGGACCTGGACCTCCTCCTCGTCCTCCCTCGGGGCCTGGCCT
CCCGCGCCGACTTTTTCCAGGACTTCGCCGGCCGGGTCCTACGACACCAC
AGCGGCGTCAGCGGCCTCTGCCCCGTGCCTGAGGCATACACCCCCGTGCT
CAAATTTCGGATGGACGGGCTGGCCGTGGACCTCCTCTTCGTCGCCCTGC
ACGGGGCGGAGGGCGGGGCGAAGGGCGGGGGGGAACTCTCGGGGGCCGAC
CTCCTGGATCCGAGCTTCCTGCGCGGCTTGGACGAGTGGGAGGTCCGGAG
CCTGAACGGCGTCCGCGTGGCGGAGGCCATCCTCCGCCTCGTGCCTGAGC
CCGCCGCCTTCTCCCTCACCCTCCGAGCCCTCAAGCTATGGGCCCGGCGC
CGGAAGCTGTACTCGAGCGTGCTCGGCTTCTTGGGGGGCGTGAACCTGGC
CATCCTGGCCGCCTTCGTCTGCCAGAAGTACCCCCTCGCCACCCCCGCCA
CCCTCCTCCTCGCCTTCTTCCGTGTCTACGCCCGATGGCCCTGGCCCTCC
CCCGCCCACCCCGTCCTCCTCTGCCCCCTCCCCCCTCCCCCCCACCCCGC
CTGTGCCCACCTCTCCTCCTGGACGCCCTCCCCCGCCGCCGGCACCCGCC
CCCTCCCCCCCTCCCTCATGACCATCGTGACCCCCACCTTCCCCGCCATG
AACAGCGCGCACAACGTCGGTCTGCCCCAGCTCCGACGCCTCCAGGAAGA
GCTCCGGCGGGCGGAGTCCCTGACCCGGCCCTGGCTCTTGGACCCGCGTC
ACTTAAGGAGGCTTCAAGGAGGCTGGCGGGCTCT
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protein sequence of rna7511

>rna7511-protein ID=rna7511-protein|Name=rna7511|organism=Nannochloropsis gaditana|type=polypeptide|length=218bp
MRVDVRHVPRSSLPPSCLAREKMPPSLPPSLPTSLPSATGPRPPVQEEGK
DEACSERALCEDGGREAGAEVEREGRKRRRAFEGLGTASGVGGGREGGRG
RLRGGQMMSVGGPGKRGRGARWARGDRGRGRVLGEGGVERATGARVSAVQ
GGQAQYLGEQPQEDILRDWKQPSESSAPRSMHARGEARRNGEGSNGPGSN
GPGSNGQGMWERERTSPF
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mRNA from alignment at CM002472.1:131126..132615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7511 ID=rna7511|Name=rna7511|organism=Nannochloropsis gaditana|type=mRNA|length=1490bp|location=Sequence derived from alignment at CM002472.1:131126..132615+ (Nannochloropsis gaditana)
CCGCGAGcggctctccttcttcgtcgcgCTCGTCTTTGCGCCCTCCGTGG
CCCGCTTCGACGTCTCCCCCGCGGTTGaagacttcctcctccaggtgcgg
tggacctccctcccgcactccctccgccctcccccccttgccccggCCCT
TtgcctggtcctccctctccttctggccACGAATCTAGTCATGGCCGTTT
TTTCATAATTATACAGGCATTAATATTCTTTATATACGTATTGTGATTCC
TTCATAATGATATATGTGATTATATCCTGCTACCATTTCAAAGTCATGCC
TTGCTCCTTTGCCTCAAAGCTCGCGCCTTCCGATCCTGGTCGATGTCTCT
CAGGATTAGTGGCCCTGTCTCGCACAACGCGCCTTattccttcgccttcc
tccctccctccttccttccctccctccctccctccctccctccttccttc
ctcccccaggtGAGCCTATGGCCGCATCGGACCTCCAGCATGCGTGTCGA
CGTCCGGCATGtcccccgctcctccctccccccctcgtgcCTCGCAAGGG
AGaaaatgcctccctccctccctccctccctccctacctccctcccttcc
gccacgGGACCCCGGCCAcccgtgcaggaggaagggaaagacgaggcTTG
CTCTGAAAGGGCGCTTtgtgaggatggagggagggaggcaggagcggagg
tggagagggagggtcggaagaggagacgcgcCTTTGAGGGTCTGGGGACC
GCGtctggggtggggggagggagggagggggggagggggcgcttgagggg
agggcagatgATGAGCGTCGGTGGGCCCgggaagcggggaaggggggcca
ggtgggcgaggggcgaccgggggagagggagggtgctgggggagggaggt
gtggagagggcgacgggagcgagggtgTCTGCGgtgcaaggagggcaagc
gcAGTATCTTGGGGAGCAGCCACAGGAAGACATTCTACGAGACTGGAAGC
AGCCGTCAGAGTCGTCAGCACCGCGCAGTATGCACGCTCGTGGCGAAGCA
AGGCgcaatggggagggaagtaaCGGTCCGGGAAGTAACGGTCCGGGAAG
TAACGGTCAGGGGATGTGGGAacgggaggtgggagagggaagagggggcg
agggggaacggggagggtgccgcggaaggggagggggagcgggagaaagA
ATGCAGAGGGGAGGTAAAAGAGAGGTGGCAGTGGGGGCACTTACGGGAAG
AGCTGCGGCGGGCGtaagaggggtggagggagggagggaaggcggggcgg
aaggaggggaagcgggcagGACGGAGAAACACatggagcgggcgggggtg
gggccgAGCGAGGTCCTGCCGCTAGCCTCGCACACCCTCGCCCAGCCTCA
GTCCCCCCAGGAGCCGGGCCTCTGCCTGCTTCGGGCCCCGCCttccggcc
tcccccccccctttccctacAGCGGACATCGCCCTTCTAG
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Coding sequence (CDS) from alignment at CM002472.1:131126..132615+

>rna7511 ID=rna7511|Name=rna7511|organism=Nannochloropsis gaditana|type=CDS|length=1314bp|location=Sequence derived from alignment at CM002472.1:131126..132615+ (Nannochloropsis gaditana)
ATGCGTGTCGACGTCCGGCATGtcccccgctcctccctccccccctcgtg
cCTCGCAAGGGAGaaaatgcctccctccctccctccctccctccctacct
ccctcccttccgccacgGGACCCCGGCCAcccgtgcaggaggaagggaaa
gacgaggcTTGCTCTGAAAGGGCGCTTtgtgaggatggagggagggaggc
aggagcggaggtggagagggagggtcggaagaggagacgcgcCTTTGAGG
GTCTGGGGACCGCGtctggggtggggggagggagggagggggggaggggg
cgcttgaggggagggcagatgATGAGCGTCGGTGGGCCCgggaagcgggg
aaggggggccaggtgggcgaggggcgaccgggggagagggagggtgctgg
gggagggaggtgtggagagggcgacgggagcgagggtgTCTGCGgtgcaa
ggagggcaagcgcAGTATCTTGGGGAGCAGCCACAGGAAGACATTCTACG
AGACTGGAAGCAGCCGTCAGAGTCGTCAGCACCGCGCAGTATGCACGCTC
GTGGCGAAGCAAGGCgcaatggggagggaagtaaCGGTCCGGGAAGTAAC
GGTCCGGGAAGTAACGGTCAGGGGATGTGGGAacgggagCGGACATCGCC
CTTCTAGATGCGTGTCGACGTCCGGCATGtcccccgctcctccctccccc
cctcgtgcCTCGCAAGGGAGaaaatgcctccctccctccctccctccctc
cctacctccctcccttccgccacgGGACCCCGGCCAcccgtgcaggagga
agggaaagacgaggcTTGCTCTGAAAGGGCGCTTtgtgaggatggaggga
gggaggcaggagcggaggtggagagggagggtcggaagaggagacgcgcC
TTTGAGGGTCTGGGGACCGCGtctggggtggggggagggagggagggggg
gagggggcgcttgaggggagggcagatgATGAGCGTCGGTGGGCCCggga
agcggggaaggggggccaggtgggcgaggggcgaccgggggagagggagg
gtgctgggggagggaggtgtggagagggcgacgggagcgagggtgTCTGC
GgtgcaaggagggcaagcgcAGTATCTTGGGGAGCAGCCACAGGAAGACA
TTCTACGAGACTGGAAGCAGCCGTCAGAGTCGTCAGCACCGCGCAGTATG
CACGCTCGTGGCGAAGCAAGGCgcaatggggagggaagtaaCGGTCCGGG
AAGTAACGGTCCGGGAAGTAACGGTCAGGGGATGTGGGAacgggagCGGA
CATCGCCCTTCTAG
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Synonyms
Publications