rna7509, rna7509 (mRNA) Nannochloropsis gaditana

Overview
Namerna7509
Unique Namerna7509
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length395
Alignment locationCM002472.1:127968..129336 -

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Properties
Property NameValue
Productvacuolar protein sorting-associated protein 29
Orig transcript idgnl|cribi|Naga_101132g1.2568.mrna
Orig protein idgnl|cribi|Naga_101132g1.2568
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:127968..129336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101132g1gene7269Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7509rna7509-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23182.1cds7491Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7509 ID=rna7509|Name=rna7509|organism=Nannochloropsis gaditana|type=mRNA|length=395bp
ATGGGGAGGACGAGGGTGCGGTTGCTGGAGTCGTACCCGGGTGATGAGGA
GGGACGGGGCTTGGAGGTTCGGGTCCGGGACGGGGCGGCGCGCCTGTGTC
TGAGCGAAGGAGGGGGGGAGGGCCCAGGGGAAGTCGTGGGAGAGGGCGTG
CTGCTCGACCCCTTCCAGACCGGCTACCTCTTGGTGCCGGGCTCGGGGAA
TTCTCCATGGTACCTGCATGACGTGGCGGTGGAGATGAGGGGGATGGAAG
GGCGGCTCTTGGCGCCGGGGGGAGGGCGGGAAGGAGGGCGGGGGGGAGGA
AGGGGGGCCCGGGGAGCACCTGCTGTCTCTGGGCTCTGTTGAGTACGCCC
AGTGCAAGGCACGGCCGAAGGAAGGGCTGGACGGGTGGGAGGACG
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protein sequence of rna7509

>rna7509-protein ID=rna7509-protein|Name=rna7509|organism=Nannochloropsis gaditana|type=polypeptide|length=194bp
MAEFGELVLVLGDLHIPHRAAAIPEKFNCMLVPNKMQHVLCTGNLVSHEQ
LEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHG
HQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGALVPEPGQHLG
SILEPGGGGGGGGERRCPASFCWQCRGPRSCATCTRRRSRVPWT
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mRNA from alignment at CM002472.1:127968..129336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7509 ID=rna7509|Name=rna7509|organism=Nannochloropsis gaditana|type=mRNA|length=1369bp|location=Sequence derived from alignment at CM002472.1:127968..129336- (Nannochloropsis gaditana)
AGATGGAGGCTGCCATATACGCTCATCTAGCCTCTAGCTTTTCTCAATGA
GCGCGGCATGAAAATCAAAGCAATATGGCGGCATAAGACATCGGCCCGGG
GGAGTCGCCATGAGCGATGACTTGCAGGCTTTCGACCACGGCGAGGACGA
GCAAAAGCTTTGCTGTTTGTTGCCCCGCGATGCCGCACATATTTGCGCCC
AAAGCTTACTCACGACATGTGCGAATCGACAGGTACGCCGTGGTGACCGT
TGCTTTACATAGCATTGGGATATAGTGCTTTCATCGCAGCAAGAGGCACC
GGCGTTTCTTCCCCTCCGGCCGCCCTGGGTCGTACGATCACATTTTTGGT
TTGGAAGGACGTTCATAAAGTCGAATTACGGTGAGAGGATTCGGAGACAC
TGAGATTTGGCTAGACTTTGTAGTCCTTGCCTTGGTTGAAATTTTATAAC
CGTGAGGAAACCCTGAAAATGTTGTGTGAAGCATGGCTACATCGAGCCGT
CCTTGACCTCGCTGACATTCGTCATCGTGTGCCGCTCTAATCCCTCCCAC
CCTCCGACTTAAGATGGCTGAATTTGGAGAGCTGGTGCTCGTTCTTGGTG
ACCTGCACATTCCTCACCGTGCTGCTGCCATCCCCGAGAAATTCAATTGC
ATGCTAGTGCCCAACAAGATGCAGCACGTCCTCTGTACAGGTACGCGGCA
GGCGGGAGGGTACCGGATGAGCGAAGAGCCCCACCTCTTTACGCGCACTT
CCCGTGAGATCCTGCGCTTTCCGCGTCCCTGACCCCTCCTTTTCTCTCCT
CCCCGTAACAGGCAACCTTGTCAGTCACGAACAGCTCGAGGAGCTCAAGG
CCCTGGCCCCCAACGTGCACGTGGTCCGGGGAGACATGGACGAGGCCTGC
CCCTCCTCCCTCCCGGCATCCGCCCCCTTCCCCGACACCAAGGTGGTGAC
GATAGGGGAGCTCCGGCTCGGGCTCTGCCACGGGCACCAGGTGCTTCCGT
GGGGGGAGGCGGCGGCCTTGGACGGGTTGGCGCGGGAGTTGGATGTGGAC
GTGCTCATTACGGGGCACACGCACAAGCAGCAGGTGAGTGAGCGGGGGGG
GGCGCTGGTTCCTGAACCCGGGCAGCATCTCGGGAGCATACTCGAGCCTG
GTGGGGGAGGCGGGGGAGGGGGGGAGAGGCGGTGCCCAGCTTCATTCTGC
TGGCAGTGCAGGGGCCCAAGGTCATGTGCTACGTGTACGAGGAGAAGGAG
CCGGGTGCCGTGGACGTGAGCAAGGTGGAGTTTGTGAAGGGGCAGGGGGG
CGGGAGATGAGGGGAAGGTGGGGAGGAAGGACGGGTCGTGTCGGGGAAAG
AAGCACGCGAGGGCTTCCA
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Coding sequence (CDS) from alignment at CM002472.1:127968..129336-

>rna7509 ID=rna7509|Name=rna7509|organism=Nannochloropsis gaditana|type=CDS|length=1170bp|location=Sequence derived from alignment at CM002472.1:127968..129336- (Nannochloropsis gaditana)
GCAACCTTGTCAGTCACGAACAGCTCGAGGAGCTCAAGGCCCTGGCCCCC
AACGTGCACGTGGTCCGGGGAGACATGGACGAGGCCTGCCCCTCCTCCCT
CCCGGCATCCGCCCCCTTCCCCGACACCAAGGTGGTGACGATAGGGGAGC
TCCGGCTCGGGCTCTGCCACGGGCACCAGGTGCTTCCGTGGGGGGAGGCG
GCGGCCTTGGACGGGTTGGCGCGGGAGTTGGATGTGGACGTGCTCATTAC
GGGGCACACGCACAAGCAGCAGGTGAGTGAGCGGGGGGGGGCGCTGGTTC
CTGAACCCGGGCAGCATCTCGGGAGCATACTCGAGCCTGGTGGGGGAGGC
GGGGGAGGGGGGGAGAGGCGGTGCCCAGCTTCATTCTGCTGGCAGTGCAG
GGGCCCAAGGTCATGTGCTACGTGTACGAGGAGAAGGAGCCGGGTGCCGT
GGACGTGAATGGCTGAATTTGGAGAGCTGGTGCTCGTTCTTGGTGACCTG
CACATTCCTCACCGTGCTGCTGCCATCCCCGAGAAATTCAATTGCATGCT
AGTGCCCAACAAGATGCAGCACGTCCTCTGTACAGGCAACCTTGTCAGTC
ACGAACAGCTCGAGGAGCTCAAGGCCCTGGCCCCCAACGTGCACGTGGTC
CGGGGAGACATGGACGAGGCCTGCCCCTCCTCCCTCCCGGCATCCGCCCC
CTTCCCCGACACCAAGGTGGTGACGATAGGGGAGCTCCGGCTCGGGCTCT
GCCACGGGCACCAGGTGCTTCCGTGGGGGGAGGCGGCGGCCTTGGACGGG
TTGGCGCGGGAGTTGGATGTGGACGTGCTCATTACGGGGCACACGCACAA
GCAGCAGGTGAGTGAGCGGGGGGGGGCGCTGGTTCCTGAACCCGGGCAGC
ATCTCGGGAGCATACTCGAGCCTGGTGGGGGAGGCGGGGGAGGGGGGGAG
AGGCGGTGCCCAGCTTCATTCTGCTGGCAGTGCAGGGGCCCAAGGTCATG
TGCTACGTGTACGAGGAGAAGGAGCCGGGTGCCGTGGACGTGAATGGCTG
AATTTGGAGAGCTGGTGCTCGTTCTTGGTGACCTGCACATTCCTCACCGT
GCTGCTGCCATCCCCGAGAAATTCAATTGCATGCTAGTGCCCAACAAGAT
GCAGCACGTCCTCTGTACAG
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Synonyms
Publications