EWM23182.1, cds7491 (CDS) Nannochloropsis gaditana

Overview
NameEWM23182.1
Unique Namecds7491
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:128647..128773 -
Alignment locationCM002472.1:128068..128525 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23182.1
Productvacuolar protein sorting-associated protein 29
Orig transcript idgnl|cribi|Naga_101132g1.2568.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:128647..128773 -
CM002472.1supercontigCM002472.1:128068..128525 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0042147retrograde transport, endosome to Golgi
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0016020membrane
GO:0030904retromer complex
Vocabulary: INTERPRO
TermDefinition
IPR028661Vps29
IPR024654Calcineurin-like_PHP_lpxH
IPR000979Phosphodiesterase_MJ0936/Vps29
IPR029052Metallo-depent_PP-like
Homology
BLAST of EWM23182.1 vs. NCBI_GenBank
Match: gi|585104065|gb|EWM23182.1| (vacuolar protein sorting-associated protein 29 [Nannochloropsis gaditana])

HSP 1 Score: 393.66 bits (1010), Expect = 1.428e-138
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
Query:    1 MAEFGELVLVLGDLHIPHRAAAIPEKFNCMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGALVPEPGQHLGSILEPGGGGGGGGERRCPASFCWQCRGPRSCATCTRRRSRVPWT 194
            MAEFGELVLVLGDLHIPHRAAAIPEKFNCMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGALVPEPGQHLGSILEPGGGGGGGGERRCPASFCWQCRGPRSCATCTRRRSRVPWT
Sbjct:    1 MAEFGELVLVLGDLHIPHRAAAIPEKFNCMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGALVPEPGQHLGSILEPGGGGGGGGERRCPASFCWQCRGPRSCATCTRRRSRVPWT 194          
BLAST of EWM23182.1 vs. NCBI_GenBank
Match: gi|553184405|ref|XP_005854083.1| (vacuolar protein sorting-associated protein 29, partial [Nannochloropsis gaditana CCMP526] >gi|422294978|gb|EKU22277.1| vacuolar protein sorting-associated protein 29, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 278.1 bits (710), Expect = 1.651e-93
Identity = 140/151 (92.72%), Postives = 141/151 (93.38%), Query Frame = 0
Query:    1 MAEFGELVLVLGDLHIPHRAAAIPEKFNCMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGALVPEPGQHLGS 151
            MAEFGELVLVLGDLHIPHRAAAIPEKF  MLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGG     PG   G+
Sbjct:    1 MAEFGELVLVLGDLHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGRWFLNPGSISGA 151          
BLAST of EWM23182.1 vs. NCBI_GenBank
Match: gi|1173948559|gb|OQR96672.1| (vacuolar protein sorting-associated protein 29-like [Thraustotheca clavata])

HSP 1 Score: 197.978 bits (502), Expect = 2.803e-61
Identity = 91/150 (60.67%), Postives = 113/150 (75.33%), Query Frame = 0
Query:    2 AEFGELVLVLGDLHIPHRAAAIPEKFNCMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGALVPEPGQHLGS 151
            A+FGELVLV+GDLHIPHRA  IPEKF  MLVPNKMQHV+CTGNLV+ EQ +EL+ LAPNVHVVRGD DE        S  FPD KV+TIG+ R+G+CHGHQ++PWG+  +L  L R+L+VD+LITGHTH+ ++  + G     PG   G+
Sbjct:    3 ADFGELVLVVGDLHIPHRALDIPEKFKKMLVPNKMQHVVCTGNLVTKEQFDELRDLAPNVHVVRGDFDEV------ESTTFPDKKVITIGQFRIGICHGHQIVPWGDVDSLAALQRKLNVDILITGHTHEYKLHTQNGKWFVNPGSITGA 146          
BLAST of EWM23182.1 vs. NCBI_GenBank
Match: gi|698795794|ref|XP_009830926.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574114502|gb|ETV79990.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 195.282 bits (495), Expect = 2.603e-60
Identity = 95/189 (50.26%), Postives = 121/189 (64.02%), Query Frame = 0
Query:    1 MAEFGELVLVLGDLHIPHRAAAIPEKFNCMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGALVPEPGQHLGSILEPGGGGGGGGERRCPASFCWQCRGPRSCATCTRRRS 189
            MA+FGELVLVLGD+HIPHRA  IPEKF  MLVPNKMQHVLCTGN+V+ EQ +EL+ LAPNVH+VRGD DE        S+ +PD KV+TIG+ R+GLCHGHQ++PWG+   L  L R+L+VD+LITGHTH+  +  + G     PG          G      +   P+      +GP+  A     + 
Sbjct:    1 MADFGELVLVLGDMHIPHRAVDIPEKFKKMLVPNKMQHVLCTGNMVTKEQYDELRGLAPNVHIVRGDFDE--------SSNYPDKKVITIGQFRIGLCHGHQIVPWGDVDCLAALQRKLNVDILITGHTHQYNLHVQHGKWFVNPG-------SITGAYSTCTQDVVPSFILMAIQGPKVVAYVYELKD 174          
BLAST of EWM23182.1 vs. NCBI_GenBank
Match: gi|1173936854|gb|OQR87731.1| (membrane coat complex retromer, subunit VPS29/PEP11 [Achlya hypogyna])

HSP 1 Score: 195.282 bits (495), Expect = 2.848e-60
Identity = 88/150 (58.67%), Postives = 113/150 (75.33%), Query Frame = 0
Query:    2 AEFGELVLVLGDLHIPHRAAAIPEKFNCMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGALVPEPGQHLGS 151
            A+FGELVL++GD HIPHRA  +PEKF  MLVPNKMQHVLCTGNLV+ EQ +EL+ LAPNVHVVRGD DE        +  FPD KV+TIG+ R+GLCHGHQ++PWG+A +L  L R+++VD+L+TGHTH+ ++  + G     PG   G+
Sbjct:    3 ADFGELVLIVGDYHIPHRAMDVPEKFKKMLVPNKMQHVLCTGNLVTKEQFDELRDLAPNVHVVRGDFDE--------NTNFPDKKVITIGQYRIGLCHGHQIVPWGDADSLAALQRKMNVDILVTGHTHQYKLHTQNGKWFVNPGSITGA 144          
BLAST of EWM23182.1 vs. NCBI_GenBank
Match: gi|813158009|ref|XP_012202353.1| (hypothetical protein SPRG_07685 [Saprolegnia parasitica CBS 223.65] >gi|641532965|gb|KDO26972.1| hypothetical protein SPRG_07685 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 193.741 bits (491), Expect = 1.313e-59
Identity = 89/150 (59.33%), Postives = 112/150 (74.67%), Query Frame = 0
Query:    2 AEFGELVLVLGDLHIPHRAAAIPEKFNCMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGALVPEPGQHLGS 151
            A+FGELVL++GD HIPHRA  IPEKF  MLVPNKMQHVLCTGNLV+ E  +EL+ LAPNVHVVRGD DE        +A FPD KVVTIG+ R+GLCHGHQ++PWG+  +L  L R+++VD+L+TGHTH+ ++  + G     PG   G+
Sbjct:    3 ADFGELVLIVGDYHIPHRAMDIPEKFKKMLVPNKMQHVLCTGNLVTKETFDELRELAPNVHVVRGDFDE--------NATFPDKKVVTIGQYRIGLCHGHQIVPWGDVDSLAALQRKMNVDILVTGHTHQYKLHAQNGKWFVNPGSITGA 144          
BLAST of EWM23182.1 vs. NCBI_GenBank
Match: gi|698795792|ref|XP_009830925.1| (hypothetical protein H257_07184 [Aphanomyces astaci] >gi|574114501|gb|ETV79989.1| hypothetical protein H257_07184 [Aphanomyces astaci])

HSP 1 Score: 194.126 bits (492), Expect = 1.594e-59
Identity = 91/151 (60.26%), Postives = 113/151 (74.83%), Query Frame = 0
Query:    1 MAEFGELVLVLGDLHIPHRAAAIPEKFNCMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGALVPEPGQHLGS 151
            MA+FGELVLVLGD+HIPHRA  IPEKF  MLVPNKMQHVLCTGN+V+ EQ +EL+ LAPNVH+VRGD DE        S+ +PD KV+TIG+ R+GLCHGHQ++PWG+   L  L R+L+VD+LITGHTH+  +  + G     PG   G+
Sbjct:    1 MADFGELVLVLGDMHIPHRAVDIPEKFKKMLVPNKMQHVLCTGNMVTKEQYDELRGLAPNVHIVRGDFDE--------SSNYPDKKVITIGQFRIGLCHGHQIVPWGDVDCLAALQRKLNVDILITGHTHQYNLHVQHGKWFVNPGSITGA 143          
BLAST of EWM23182.1 vs. NCBI_GenBank
Match: gi|673045093|ref|XP_008876507.1| (hypothetical protein H310_11562 [Aphanomyces invadans] >gi|574467895|gb|ETV94916.1| hypothetical protein H310_11562 [Aphanomyces invadans])

HSP 1 Score: 192.586 bits (488), Expect = 3.425e-59
Identity = 92/151 (60.93%), Postives = 112/151 (74.17%), Query Frame = 0
Query:    1 MAEFGELVLVLGDLHIPHRAAAIPEKFNCMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGALVPEPGQHLGS 151
            MA+FGELVLVLGD+HIPHRA  IPEKF  MLVPNKMQHVLCTGNLV+ EQ +EL+ LAPNVH+VRGD DE         + +PD KVVTIG+ R+GLCHGHQ++PWG+   L  L R+L+VD+LITGHTH+ ++    G     PG   G+
Sbjct:    1 MADFGELVLVLGDMHIPHRAVDIPEKFKKMLVPNKMQHVLCTGNLVTKEQFDELRDLAPNVHIVRGDFDEG--------SHYPDKKVVTIGQFRIGLCHGHQIVPWGDVDCLGALQRKLNVDILITGHTHEYKLLVHHGKWFINPGSITGA 143          
BLAST of EWM23182.1 vs. NCBI_GenBank
Match: gi|669169213|ref|XP_008619955.1| (hypothetical protein SDRG_15557 [Saprolegnia diclina VS20] >gi|530728375|gb|EQC26617.1| hypothetical protein SDRG_15557 [Saprolegnia diclina VS20])

HSP 1 Score: 191.815 bits (486), Expect = 6.255e-59
Identity = 87/150 (58.00%), Postives = 111/150 (74.00%), Query Frame = 0
Query:    2 AEFGELVLVLGDLHIPHRAAAIPEKFNCMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGALVPEPGQHLGS 151
            A+FGELVL++GD HIPHRA  IPEKF  MLVPNKMQHVLCTGNLV+ E  +EL+ LAPNVHVVRGD DE        +  FPD KV+TIG+ R+GLCHGHQ++PWG+  +L  L R+++VD+L+TGHTH+ ++  + G     PG   G+
Sbjct:    3 ADFGELVLIVGDYHIPHRAMDIPEKFKKMLVPNKMQHVLCTGNLVTKETFDELRELAPNVHVVRGDFDE--------NTTFPDKKVITIGQYRIGLCHGHQIVPWGDVDSLAALQRKMNVDILVTGHTHQYKLHAQNGKWFVNPGSITGA 144          
BLAST of EWM23182.1 vs. NCBI_GenBank
Match: gi|298711907|emb|CBJ48594.1| (similar to Vacuolar protein sorting 29 (Vesicle protein sorting 29) [Ectocarpus siliculosus])

HSP 1 Score: 188.734 bits (478), Expect = 1.041e-57
Identity = 91/149 (61.07%), Postives = 109/149 (73.15%), Query Frame = 0
Query:    3 EFGELVLVLGDLHIPHRAAAIPEKFNCMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEACPSSLPASAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGALVPEPGQHLGS 151
            +FGELVLVLGD+HIPHR AAIPEKF  MLVPNKMQHVLCTGNLV  +Q  +L+ LAPNVHVVRGD +E        S  FP+TKVV IG+ R+GL HGHQ++PWG+  AL    R+L  D+LI+GHTH+ QV+E GG     PG   G+
Sbjct:    4 DFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEE--------STTFPETKVVQIGQFRVGLTHGHQIVPWGDPNALAMTQRQLGADILISGHTHRNQVNEFGGRWFINPGSITGA 144          
The following BLAST results are available for this feature:
BLAST of EWM23182.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104065|gb|EWM23182.1|1.428e-138100.00vacuolar protein sorting-associated protein 29 [Na... [more]
gi|553184405|ref|XP_005854083.1|1.651e-9392.72vacuolar protein sorting-associated protein 29, pa... [more]
gi|1173948559|gb|OQR96672.1|2.803e-6160.67vacuolar protein sorting-associated protein 29-lik... [more]
gi|698795794|ref|XP_009830926.1|2.603e-6050.26hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|1173936854|gb|OQR87731.1|2.848e-6058.67membrane coat complex retromer, subunit VPS29/PEP1... [more]
gi|813158009|ref|XP_012202353.1|1.313e-5959.33hypothetical protein SPRG_07685 [Saprolegnia paras... [more]
gi|698795792|ref|XP_009830925.1|1.594e-5960.26hypothetical protein H257_07184 [Aphanomyces astac... [more]
gi|673045093|ref|XP_008876507.1|3.425e-5960.93hypothetical protein H310_11562 [Aphanomyces invad... [more]
gi|669169213|ref|XP_008619955.1|6.255e-5958.00hypothetical protein SDRG_15557 [Saprolegnia dicli... [more]
gi|298711907|emb|CBJ48594.1|1.041e-5761.07similar to Vacuolar protein sorting 29 (Vesicle pr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7509rna7509Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications