rna7503, rna7503 (mRNA) Nannochloropsis gaditana

Overview
Namerna7503
Unique Namerna7503
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length553
Alignment locationCM002472.1:108139..108896 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102542g1.10501.mrna
Orig protein idgnl|cribi|Naga_102542g1.10501
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:108139..108896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102542g1gene7263Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23189.1cds7485Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7503rna7503-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7503 ID=rna7503|Name=rna7503|organism=Nannochloropsis gaditana|type=mRNA|length=553bp
TCTCAGGGCGGCCATCACGGCGACCGCTCGCAAGGAAGCGAGCCTCTCTG
CGATGCCATGCTCTTCGAGCCCATTCCCTATCGCTCGGCTCTCAGGGAGG
ACTGCACTCACGTGCTGGTTCTACGGACGCGGCCGGACGGAGTGAGCGTG
ACAGGCAAGATGAGCCTGATCGAGAAGCTCATGTACCGTCGGTTTTTTTC
TCGGAAAAACGAGCTGCCCGGCATTGCCCAATGGATGACTCAGCAGCAGC
ACAAGCGGATATATGCCGAGGATGTCCTGCGTCTGGTGTGTACCTCCCTC
CCCTCCTCCCTTCCTCCCTCCCTCCTTCCCTTCCTTTGTCTCTCCCTCCA
TCATCTCTCCCGTGGCGGTCTTTTTTCTCCTTATCCTTCGGACCTTCTCC
CTTTCCTTTGCCGTCATGATCCTCTTGTCATACGCCCAATCATTTTTATA
GCTCTTTTATCAGAGCCAGGCCGCGAGCACGGGCCTGGTGGTGTCTTTTC
GGGTACCTTGAAGCCCCCCTCCCTCCCCCCTCCCTCCCTCCCTCCCTCCT
TCC
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protein sequence of rna7503

>rna7503-protein ID=rna7503-protein|Name=rna7503|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MGGHPHGFPFLTHSLARSLTHSLPSSLPPGKMSLIEKLMYRRFFSRKNEL
PGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRG
GLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKP
PSLPPPSLPPSF
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mRNA from alignment at CM002472.1:108139..108896-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7503 ID=rna7503|Name=rna7503|organism=Nannochloropsis gaditana|type=mRNA|length=758bp|location=Sequence derived from alignment at CM002472.1:108139..108896- (Nannochloropsis gaditana)
AGGGCGGCCATCACGGCGACCGCTCGCAAGGAAGCGAGCCTCTCTGCGAT
GCCATGCTCTTCGAGCCCATTCCCTATCGCTCGGCTCTCAGGGAGGACTG
CACTCACGTGCTGGTTCTACGGACGCGGCCGGACGGAGTGAGCGTGACAG
GTGAGAAGGGAGGGAACGAGGGAGGGAGGGAACAAGGGAGGGAGGGAGGG
AGGGGCTTTGGCGTCTTCTCTTGTAAATTAAAGGTGAAGGTAGGGACGGA
AAAGGAAGCTTTGAGGAGCACATGGGAGGTCATCCACACGGCTTTCCTTT
CCTTACTCACTCACTCGCTCGCTCACTCACTCACTCACTCCCTTCCTCCC
TCCCTCCAGGCAAGATGAGCCTGATCGAGAAGCTCATGTACCGTCGGTTT
TTTTCTCGGAAAAACGAGCTGCCCGGCATTGCCCAATGGATGACTCAGCA
GCAGCACAAGCGGATATATGCCGAGGATGTCCTGCGTCTGGTGTGTACCT
CCCTCCCCTCCTCCCTTCCTCCCTCCCTCCTTCCCTTCCTTTGTCTCTCC
CTCCATCATCTCTCCCGTGGCGGTCTTTTTTCTCCTTATCCTTCGGACCT
TCTCCCTTTCCTTTGCCGTCATGATCCTCTTGTCATACGCCCAATCATTT
TTATAGCTCTTTTATCAGAGCCAGGCCGCGAGCACGGGCCTGGTGGTGTC
TTTTCGGGTACCTTGAAGCCCCCCTCCCTCCCCCCTCCCTCCCTCCCTCC
CTCCTTCC
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Coding sequence (CDS) from alignment at CM002472.1:108139..108896-

>rna7503 ID=rna7503|Name=rna7503|organism=Nannochloropsis gaditana|type=CDS|length=487bp|location=Sequence derived from alignment at CM002472.1:108139..108896- (Nannochloropsis gaditana)
ATGGGAGGTCATCCACACGGCTTTCCTTTCCTTACTCACTCACTCGCTCG
CTCACTCACTCACTCACTCCCTTCCTCCCTCCCTCCAGGCAAGATGAGCC
TGATCGAGAAGCTCATGTACCGTCGGTTTTTTTCTCGGAAAAACGAGCTG
CCCGGCATTGCCCAATGGATGACTCAGCAGCAGCACAAGCGGATATATGC
CGAGGATGTCCTGCGTCTGGTGTGTACCTCCCTCCCCTCCTCCCTTCCTC
CCTCCCTCCTTCCCTTCCTTTGTCTCTCCCTCCATCATCTCTCCCGTGGC
GGTCTTTTTTCTCCTTATCCTTCGGACCTTCTCCCTTTCCTTTGCCGTCA
TGATCCTCTTGTCATACGCCCAATCATTTTTATAGCTCTTTTATCAGAGC
CAGGCCGCGAGCACGGGCCTGGTGGTGTCTTTTCGGGTACCTTGAAGCCC
CCCTCCCTCCCCCCTCCCTCCCTCCCTCCCTCCTTCC
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Synonyms
Publications