EWM23189.1, cds7485 (CDS) Nannochloropsis gaditana

Overview
NameEWM23189.1
Unique Namecds7485
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:108139..108625 -

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Properties
Property NameValue
Start range108139
Start range.
Protein idEWM23189.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102542g1.10501.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:108139..108625 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23189.1 vs. NCBI_GenBank
Match: gi|585104078|gb|EWM23189.1| (hypothetical protein Naga_102542g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 315.464 bits (807), Expect = 1.016e-108
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 
Query:    1 MGGHPHGFPFLTHSLARSLTHSLPSSLPPGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF 162
            MGGHPHGFPFLTHSLARSLTHSLPSSLPPGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF
Sbjct:    1 MGGHPHGFPFLTHSLARSLTHSLPSSLPPGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF 162
[Close]
BLAST of EWM23189.1 vs. NCBI_GenBank
Match: gi|585104077|gb|EWM23188.1| (hypothetical protein Naga_102542g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 263.462 bits (672), Expect = 3.927e-88
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 
Query:   30 GKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF 162
            GKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF
Sbjct:   33 GKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF 165
The following BLAST results are available for this feature:
BLAST of EWM23189.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104078|gb|EWM23189.1|1.016e-108100.00hypothetical protein Naga_102542g1, partial [Nanno... [more]
gi|585104077|gb|EWM23188.1|3.927e-88100.00hypothetical protein Naga_102542g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7503rna7503Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications