rna7502, rna7502 (mRNA) Nannochloropsis gaditana

Overview
Namerna7502
Unique Namerna7502
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length720
Alignment locationCM002472.1:108139..108900 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102542g1.10500.mrna
Orig protein idgnl|cribi|Naga_102542g1.10500
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:108139..108900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102542g1gene7263Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7502rna7502-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23188.1cds7484Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7502 ID=rna7502|Name=rna7502|organism=Nannochloropsis gaditana|type=mRNA|length=720bp
ATGAACTCGACGCCCGCGGTAAATATTGCGTCTTCTCCGGGCGAGGGCTC
AGAAGCGGAGACCTCCGCCCCTTTGGTCACTCAGGAAGCGGAGTTGTCGG
CGTCACCGGCGTCCGAAACTCGCACTGAGCAATCAGAGTCTGCGTCCACA
GCCAGCACCGACCCTTCAGAAAACACGTCGACCATGACCAATGCGAGCAC
GGGCGTTCTTTCCACCTCCACCGCTACGGAGATTTCCCCCCCCTTGGTGG
CTCCCACCCCGACTTACCCCGGGCATTGGACGAGGGGGGCTGGACGAAAG
ATCATCGTCGGAGTCTGCGCCCGGGAGAAGAAGGCAAAATCCAAGGCCAT
GAACGAAATTCTTTCCCGGCTGGATCGAAAGAAATTCCAGGTCCTGATCT
TCGGAGACCAATGCATCTTGCAGCAGCCCCCGGAGCAATGGCCCTTTTGC
GATGCCCTTATTGCGTTTTATTCCACAGGGTTCCCCTTGGCCAAAGCAGA
AGCCTACGCAGAGTTGGTCAAACCCTACGTCCTGAACGATTTGAGCATGC
AGCGTGCCCTCCACGACCGGCGCTGCGTGTACGACTTGCTGATGGAGAAC
AACATCGACGTGCCCGTGCACGCCTATCTGAACCGGGATGAGCCCGGAGG
GGGAAGGCTGGAGGAGTTCGATGAGTTCATCGTGGTGAATGGGATGCAGG
GAGGAAGTCTCGGACACTGA
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protein sequence of rna7502

>rna7502-protein ID=rna7502-protein|Name=rna7502|organism=Nannochloropsis gaditana|type=polypeptide|length=165bp
MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRK
NELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHL
SRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGT
LKPPSLPPPSLPPSF
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mRNA from alignment at CM002472.1:108139..108900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7502 ID=rna7502|Name=rna7502|organism=Nannochloropsis gaditana|type=mRNA|length=762bp|location=Sequence derived from alignment at CM002472.1:108139..108900- (Nannochloropsis gaditana)
TCTCAGGGCGGCCATCACGGCGACCGCTCGCAAGGAAGCGAGCCTCTCTG
CGATGCCATGCTCTTCGAGCCCATTCCCTATCGCTCGGCTCTCAGGGAGG
ACTGCACTCACGTGCTGGTTCTACGGACGCGGCCGGACGGAGTGAGCGTG
ACAGGTGAGAAGGGAGGGAACGAGGGAGGGAGGGAACAAGGGAGGGAGGG
AGGGAGGGGCTTTGGCGTCTTCTCTTGTAAATTAAAGGTGAAGGTAGGGA
CGGAAAAGGAAGCTTTGAGGAGCACATGGGAGGTCATCCACACGGCTTTC
CTTTCCTTACTCACTCACTCGCTCGCTCACTCACTCACTCACTCCCTTCC
TCCCTCCCTCCAGGCAAGATGAGCCTGATCGAGAAGCTCATGTACCGTCG
GTTTTTTTCTCGGAAAAACGAGCTGCCCGGCATTGCCCAATGGATGACTC
AGCAGCAGCACAAGCGGATATATGCCGAGGATGTCCTGCGTCTGGTGTGT
ACCTCCCTCCCCTCCTCCCTTCCTCCCTCCCTCCTTCCCTTCCTTTGTCT
CTCCCTCCATCATCTCTCCCGTGGCGGTCTTTTTTCTCCTTATCCTTCGG
ACCTTCTCCCTTTCCTTTGCCGTCATGATCCTCTTGTCATACGCCCAATC
ATTTTTATAGCTCTTTTATCAGAGCCAGGCCGCGAGCACGGGCCTGGTGG
TGTCTTTTCGGGTACCTTGAAGCCCCCCTCCCTCCCCCCTCCCTCCCTCC
CTCCCTCCTTCC
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Coding sequence (CDS) from alignment at CM002472.1:108139..108900-

>rna7502 ID=rna7502|Name=rna7502|organism=Nannochloropsis gaditana|type=CDS|length=992bp|location=Sequence derived from alignment at CM002472.1:108139..108900- (Nannochloropsis gaditana)
GCAAGATGAGCCTGATCGAGAAGCTCATGTACCGTCGGTTTTTTTCTCGG
AAAAACGAGCTGCCCGGCATTGCCCAATGGATGACTCAGCAGCAGCACAA
GCGGATATATGCCGAGGATGTCCTGCGTCTGGTGTGTACCTCCCTCCCCT
CCTCCCTTCCTCCCTCCCTCCTTCCCTTCCTTTGTCTCTCCCTCCATCAT
CTCTCCCGTGGCGGTCTTTTTTCTCCTTATCCTTCGGACCTTCTCCCTTT
CCTTTGCCGTCATGATCCTCTTGTCATACGCCCAATCATTTTTATAGCTC
TTTTATCAGAGCCAGGCCGCGAGCACGGGCCTGGTGGTGTCTTTTCGGGT
ACCTTGAAGCCCCCCTCCCTCCCCCCTCCCTCCCTCCCTCCCTCCTTCCA
TGCTCTTCGAGCCCATTCCCTATCGCTCGGCTCTCAGGGAGGACTGCACT
CACGTGCTGGTTCTACGGACGCGGCCGGACGGAGTGAGCGTGACAGGCAA
GATGAGCCTGATCGAGAAGCTCATGTACCGTCGGTTTTTTTCTCGGAAAA
ACGAGCTGCCCGGCATTGCCCAATGGATGACTCAGCAGCAGCACAAGCGG
ATATATGCCGAGGATGTCCTGCGTCTGGTGTGTACCTCCCTCCCCTCCTC
CCTTCCTCCCTCCCTCCTTCCCTTCCTTTGTCTCTCCCTCCATCATCTCT
CCCGTGGCGGTCTTTTTTCTCCTTATCCTTCGGACCTTCTCCCTTTCCTT
TGCCGTCATGATCCTCTTGTCATACGCCCAATCATTTTTATAGCTCTTTT
ATCAGAGCCAGGCCGCGAGCACGGGCCTGGTGGTGTCTTTTCGGGTACCT
TGAAGCCCCCCTCCCTCCCCCCTCCCTCCCTCCCTCCCTCCTTCCATGCT
CTTCGAGCCCATTCCCTATCGCTCGGCTCTCAGGGAGGACTGCACTCACG
TGCTGGTTCTACGGACGCGGCCGGACGGAGTGAGCGTGACAG
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Synonyms
Publications