EWM23188.1, cds7484 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|585104077|gb|EWM23188.1| (hypothetical protein Naga_102542g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 327.791 bits (839), Expect = 1.755e-113 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query: 1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF 165
MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF
Sbjct: 1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF 165
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|585104078|gb|EWM23189.1| (hypothetical protein Naga_102542g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 263.462 bits (672), Expect = 3.999e-88 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 33 GKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF 165
GKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF
Sbjct: 30 GKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF 162
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|873240096|emb|CEL93788.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 99.7525 bits (247), Expect = 2.529e-21 Identity = 59/137 (43.07%), Postives = 81/137 (59.12%), Query Frame = 0
Query: 1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSL--------PSSLPPSLLPFLC-LSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPI 128
+L+EPIPYRSA+RE+ TH+LVLRTRPDGV VTG LIEKL+ RFF KN + I +M + HK +YAED+L L ++ P +L S LP ++ + +SR +F+ F +D LV P+
Sbjct: 379 LLYEPIPYRSAVRENATHILVLRTRPDGVKVTGAFKLIEKLIMARFFKAKNRMRDIYTYMKRLGHKVLYAEDILWLNNRTMDITGAAGPPHALAISPLPDRTEIARYEMSREAIFNALRDG---FARAYDVLVADPL 512
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|1210524451|dbj|GAX16709.1| (hypothetical protein FisN_21Hh150 [Fistulifera solaris]) HSP 1 Score: 97.8265 bits (242), Expect = 9.150e-21 Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 0
Query: 1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRL 76
+++EP+PY SA+ E THV+V+R+RPDGV V+GK S E L++RRFF RKN LP I + +QQHK+IYA DVL L
Sbjct: 372 LVYEPLPYHSAIDEGATHVIVVRSRPDGVDVSGKSSFFESLIFRRFFLRKNRLPHIFELFRRQQHKKIYARDVLEL 447
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|223995323|ref|XP_002287345.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976461|gb|EED94788.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 97.8265 bits (242), Expect = 1.029e-20 Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 0
Query: 1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRL 76
++FEP+P+RSA+ E THV+ LR+RPDGV VTGK S+ EKL+ RRFF RKN L Q+M + HKR YAEDV+ L
Sbjct: 452 LMFEPLPFRSAVGEGATHVICLRSRPDGVDVTGKTSIFEKLIVRRFFLRKNRLRSAFQYMRKHLHKRRYAEDVIVL 527
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|1210530912|dbj|GAX10452.1| (hypothetical protein FisN_21Lh150 [Fistulifera solaris]) HSP 1 Score: 96.6709 bits (239), Expect = 2.607e-20 Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 0
Query: 1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRL 76
+++EP+PY SA+ + THV+V+R+RPDGV V+GK S E L++RRFF RKN LP I + +QQHK+IYA DVL L
Sbjct: 322 LVYEPLPYHSAIDDGATHVIVVRSRPDGVDVSGKSSFFESLIFRRFFLRKNRLPHIFERFRRQQHKKIYARDVLEL 397
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|551597250|ref|XP_005780750.1| (hypothetical protein EMIHUDRAFT_463071 [Emiliania huxleyi CCMP1516] >gi|485633450|gb|EOD28321.1| hypothetical protein EMIHUDRAFT_463071 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 93.9745 bits (232), Expect = 1.797e-19 Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 0
Query: 1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVL 74
MLFEPIPYR A+RE THVLVLRTRPDGV+V + S+ E+L+ RFF RK +P + + M QQH++ YAED+L
Sbjct: 310 MLFEPIPYRLAVREGATHVLVLRTRPDGVNVVRRQSIFERLIAWRFFERKMRMPHMYKHMRDQQHRQRYAEDIL 383
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|219118301|ref|XP_002179928.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408981|gb|EEC48914.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 91.6633 bits (226), Expect = 1.812e-18 Identity = 39/76 (51.32%), Postives = 58/76 (76.32%), Query Frame = 0
Query: 1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRL 76
+++EP+PYRSA+ THV+VLR+RPDG VTGK + E++++RRF RKN LP + Q ++QQ HK++YAE V+ +
Sbjct: 399 LIYEPLPYRSAVAAGATHVVVLRSRPDGTDVTGKGGIFERMIFRRFLLRKNRLPHMFQRLSQQLHKKLYAEQVIEV 474
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|397567073|gb|EJK45376.1| (hypothetical protein THAOC_36011 [Thalassiosira oceanica]) HSP 1 Score: 80.4925 bits (197), Expect = 3.812e-15 Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 0
Query: 1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRL 76
+L+ PIPY+SA+ E THV+ LR+RPDG V+G+ S EK++ RRF RKN L ++M HK++YA+ VL L
Sbjct: 112 LLYAPIPYQSAIDEGATHVICLRSRPDGTDVSGRPSFFEKMIVRRFLLRKNGLKEAYKYMKSNFHKKLYAKQVLEL 187
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|551666742|ref|XP_005836132.1| (hypothetical protein GUITHDRAFT_93499 [Guillardia theta CCMP2712] >gi|428180284|gb|EKX49152.1| hypothetical protein GUITHDRAFT_93499 [Guillardia theta CCMP2712]) HSP 1 Score: 77.411 bits (189), Expect = 1.334e-13 Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 0
Query: 2 LFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRL 76
L+EPIP++SA+ + THVLVLRTRPD V K S +E+ M FF R+ +LP I ++ Q+HK+ YA D+L L
Sbjct: 255 LYEPIPFKSAVEDGFTHVLVLRTRPDQQDVVPKKSKMEEKMMDHFFLRRYQLPHIYDYLVNQEHKKTYARDILAL 329 The following BLAST results are available for this feature:
BLAST of EWM23188.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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