EWM23188.1, cds7484 (CDS) Nannochloropsis gaditana

Overview
NameEWM23188.1
Unique Namecds7484
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:108747..108843 -
Alignment locationCM002472.1:108139..108537 -

Link to JBrowse

Properties
Property NameValue
Start range108139
Start range.
Protein idEWM23188.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102542g1.10500.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:108747..108843 -
CM002472.1supercontigCM002472.1:108139..108537 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
Homology
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|585104077|gb|EWM23188.1| (hypothetical protein Naga_102542g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 327.791 bits (839), Expect = 1.755e-113
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF 165
            MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF
Sbjct:    1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF 165          
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|585104078|gb|EWM23189.1| (hypothetical protein Naga_102542g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 263.462 bits (672), Expect = 3.999e-88
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:   33 GKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF 165
            GKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF
Sbjct:   30 GKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSLPSSLPPSLLPFLCLSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPIIFIALLSEPGREHGPGGVFSGTLKPPSLPPPSLPPSF 162          
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|873240096|emb|CEL93788.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 99.7525 bits (247), Expect = 2.529e-21
Identity = 59/137 (43.07%), Postives = 81/137 (59.12%), Query Frame = 0
Query:    1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRLVCTSL--------PSSLPPSLLPFLC-LSLHHLSRGGLFSPYPSDLLPFLCRHDPLVIRPI 128
            +L+EPIPYRSA+RE+ TH+LVLRTRPDGV VTG   LIEKL+  RFF  KN +  I  +M +  HK +YAED+L L   ++        P +L  S LP    ++ + +SR  +F+        F   +D LV  P+
Sbjct:  379 LLYEPIPYRSAVRENATHILVLRTRPDGVKVTGAFKLIEKLIMARFFKAKNRMRDIYTYMKRLGHKVLYAEDILWLNNRTMDITGAAGPPHALAISPLPDRTEIARYEMSREAIFNALRDG---FARAYDVLVADPL 512          
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|1210524451|dbj|GAX16709.1| (hypothetical protein FisN_21Hh150 [Fistulifera solaris])

HSP 1 Score: 97.8265 bits (242), Expect = 9.150e-21
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 0
Query:    1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRL 76
            +++EP+PY SA+ E  THV+V+R+RPDGV V+GK S  E L++RRFF RKN LP I +   +QQHK+IYA DVL L
Sbjct:  372 LVYEPLPYHSAIDEGATHVIVVRSRPDGVDVSGKSSFFESLIFRRFFLRKNRLPHIFELFRRQQHKKIYARDVLEL 447          
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|223995323|ref|XP_002287345.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976461|gb|EED94788.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 97.8265 bits (242), Expect = 1.029e-20
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 0
Query:    1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRL 76
            ++FEP+P+RSA+ E  THV+ LR+RPDGV VTGK S+ EKL+ RRFF RKN L    Q+M +  HKR YAEDV+ L
Sbjct:  452 LMFEPLPFRSAVGEGATHVICLRSRPDGVDVTGKTSIFEKLIVRRFFLRKNRLRSAFQYMRKHLHKRRYAEDVIVL 527          
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|1210530912|dbj|GAX10452.1| (hypothetical protein FisN_21Lh150 [Fistulifera solaris])

HSP 1 Score: 96.6709 bits (239), Expect = 2.607e-20
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 0
Query:    1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRL 76
            +++EP+PY SA+ +  THV+V+R+RPDGV V+GK S  E L++RRFF RKN LP I +   +QQHK+IYA DVL L
Sbjct:  322 LVYEPLPYHSAIDDGATHVIVVRSRPDGVDVSGKSSFFESLIFRRFFLRKNRLPHIFERFRRQQHKKIYARDVLEL 397          
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|551597250|ref|XP_005780750.1| (hypothetical protein EMIHUDRAFT_463071 [Emiliania huxleyi CCMP1516] >gi|485633450|gb|EOD28321.1| hypothetical protein EMIHUDRAFT_463071 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 93.9745 bits (232), Expect = 1.797e-19
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 0
Query:    1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVL 74
            MLFEPIPYR A+RE  THVLVLRTRPDGV+V  + S+ E+L+  RFF RK  +P + + M  QQH++ YAED+L
Sbjct:  310 MLFEPIPYRLAVREGATHVLVLRTRPDGVNVVRRQSIFERLIAWRFFERKMRMPHMYKHMRDQQHRQRYAEDIL 383          
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|219118301|ref|XP_002179928.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408981|gb|EEC48914.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 91.6633 bits (226), Expect = 1.812e-18
Identity = 39/76 (51.32%), Postives = 58/76 (76.32%), Query Frame = 0
Query:    1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRL 76
            +++EP+PYRSA+    THV+VLR+RPDG  VTGK  + E++++RRF  RKN LP + Q ++QQ HK++YAE V+ +
Sbjct:  399 LIYEPLPYRSAVAAGATHVVVLRSRPDGTDVTGKGGIFERMIFRRFLLRKNRLPHMFQRLSQQLHKKLYAEQVIEV 474          
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|397567073|gb|EJK45376.1| (hypothetical protein THAOC_36011 [Thalassiosira oceanica])

HSP 1 Score: 80.4925 bits (197), Expect = 3.812e-15
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 0
Query:    1 MLFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRL 76
            +L+ PIPY+SA+ E  THV+ LR+RPDG  V+G+ S  EK++ RRF  RKN L    ++M    HK++YA+ VL L
Sbjct:  112 LLYAPIPYQSAIDEGATHVICLRSRPDGTDVSGRPSFFEKMIVRRFLLRKNGLKEAYKYMKSNFHKKLYAKQVLEL 187          
BLAST of EWM23188.1 vs. NCBI_GenBank
Match: gi|551666742|ref|XP_005836132.1| (hypothetical protein GUITHDRAFT_93499 [Guillardia theta CCMP2712] >gi|428180284|gb|EKX49152.1| hypothetical protein GUITHDRAFT_93499 [Guillardia theta CCMP2712])

HSP 1 Score: 77.411 bits (189), Expect = 1.334e-13
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 0
Query:    2 LFEPIPYRSALREDCTHVLVLRTRPDGVSVTGKMSLIEKLMYRRFFSRKNELPGIAQWMTQQQHKRIYAEDVLRL 76
            L+EPIP++SA+ +  THVLVLRTRPD   V  K S +E+ M   FF R+ +LP I  ++  Q+HK+ YA D+L L
Sbjct:  255 LYEPIPFKSAVEDGFTHVLVLRTRPDQQDVVPKKSKMEEKMMDHFFLRRYQLPHIYDYLVNQEHKKTYARDILAL 329          
The following BLAST results are available for this feature:
BLAST of EWM23188.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104077|gb|EWM23188.1|1.755e-113100.00hypothetical protein Naga_102542g1, partial [Nanno... [more]
gi|585104078|gb|EWM23189.1|3.999e-88100.00hypothetical protein Naga_102542g1, partial [Nanno... [more]
gi|873240096|emb|CEL93788.1|2.529e-2143.07unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210524451|dbj|GAX16709.1|9.150e-2157.89hypothetical protein FisN_21Hh150 [Fistulifera sol... [more]
gi|223995323|ref|XP_002287345.1|1.029e-2059.21predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210530912|dbj|GAX10452.1|2.607e-2056.58hypothetical protein FisN_21Lh150 [Fistulifera sol... [more]
gi|551597250|ref|XP_005780750.1|1.797e-1959.46hypothetical protein EMIHUDRAFT_463071 [Emiliania ... [more]
gi|219118301|ref|XP_002179928.1|1.812e-1851.32predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397567073|gb|EJK45376.1|3.812e-1548.68hypothetical protein THAOC_36011 [Thalassiosira oc... [more]
gi|551666742|ref|XP_005836132.1|1.334e-1349.33hypothetical protein GUITHDRAFT_93499 [Guillardia ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7502rna7502Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications