rna7500, rna7500 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7500
Unique Name	rna7500
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2950
Alignment location	CM002472.1:103569..104935 +

Link to JBrowse

Properties


Property Name	Value
Product	rna-binding protein pno1
Orig transcript id	gnl\|cribi\|Naga_100485g1.10093.mrna
Orig protein id	gnl\|cribi\|Naga_100485g1.10093
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:103569..104935 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100485g1	gene7261	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7500	rna7500-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23192.1	cds7482	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:103569..104935+
coding sequence from alignment at CM002472.1:103569..104935+

mRNA sequence

>rna7500 ID=rna7500|Name=rna7500|organism=Nannochloropsis gaditana|type=mRNA|length=2950bp
TTTTTGTTGGCAAGGTCCAAGTCGACATGTTTCCCTTTGCCCAACGCCAC
CGTCACCCGCAACGGCATGATAAACGACGCGCAAAAGCACCAAGTATGCC
CAGAATAAGGACCGGACGATACGGTCGTCTGCTACAGGATACAAAGCGAT
GGAATTGAGAAGTATGTCGCCTCAGAAAGGTTGCGTGACCATTGCACCTT
GAGCCGGAGAATGACTGCTATCACGACGGTAATGTGCATGCTAGAAGCCC
CGCGGCATTCCAATTTCTACCACAAGCCATCAAGCCACGCGTCTCAACCT
CTACGAAATCATTGATCATGTGACATTGTATATTTTACTGATGCCCAAGG
CCTTTTCCTTTGTGAACGCGTGTGTATGTACTCACATCTCTTCACCCTTC
TTCGCTTCCCTCTGAGATCAACTTACTAACAAGCAGCGAGCTACAGCAAG
TACCGCCGCTATCTGAGCAACGTTATACACAATTCCAAGCACATGGCCTT
TCTGTGTGTTACTTTATGGCAATAGCGATTGCATTTAGCATAGAGGAGGA
TGGCGTGCCTTATCACAGTGCTGAGAGAGTGAAATGGCATCTCCTCGGGA
CGACCCGCCGCTGTATCTTGGCATCGACGTGGGCACGGGCTCAGCGAGGG
CGGCTTTTTTTACGGATTACGGTGGCCAAGTGGGCCAAGCAGGAGTTTCT
CGGATCAAGACCTTTCGACCTGTAGGCTACCCTCAGCTTTTCCAGCAAAG
CACTGAAAACATCTGGCGTGCCGTCTGCAGCGCAGTACACACAGCGCTGA
ACAGTGTCGTGAAAATTTACTCTGGTAAAAGTTCTGGGGTAGAAGCGCCC
AGAGAGGCATTGTTCAAGGTCCAGAAGCGTGTGGTCGGTTTGGCCTTCGA
TGCGACCTGCTCCCTCGTTGTTCGTGGGAAAGGGGATCAGCCGGTCGATG
TCACGCCCCAAAATGCCCGGACATGGGTGGAAATGGGCCAGGGGCCGGCA
GAGGAGGAGTTGGGAGGAAGAGAAGGAAGGAAGGAGGTGCCGGACGTGGT
GCTTTGGCTTGATCATCGGGCGAGCAGGGAGGCAGCGGAGATAAATGCGT
GGGCGCAGATGGATGGCGATGGAACCAATCAAGAAGAGAATGTGATCGCC
CAACGTTTGCGGCACGTAGGGGGGAAGATATCTCCGGAAAACCAGGTGCC
CAAGCTGCTCTGGCTGAAGCGGCATCTGGAAGCGCGCATATGGGGAGAGA
AGGAGGGCGGGCAGGAAGGAGAGATGCCATGCGAGGCCAGCTTTTATGAC
CTGACTGACTACTTGTCGCACCGCGCGTGTCGAAGGGATGGGGAGGAGGG
GCAGCACGGGGATCTTCGGTCCTTGTGCTGCGTTGGGAGCAAATGGTTGT
ACCGCCATGACGGGGACGAGGAGGCAGAGGCCGATGGAGGAGGCTGGTCA
GTACGGAGGAAGGATAAGGGGTGGAAGGTTCTAGAAGGTTCTGGAAGGAT
GAAGAGGCTTGGGCCGGGGAAGAGTACCTCGGTTGTCGCCTTCGGCCCCG
AGCAAATCGTGGCCACCCTATTGAATTCGCGTGCTCCCACCACTAGCGCC
AAACAATGACAGAGCGCATTCTGCAGCAATCTCGATTCTCACCTTCACGT
CCCTCCTTTCCTTCCCCTTAACGGCGTCTTCCCTCAATCTCTTTCCTGCC
CCTTTCCCGGTCAGGGACCACCGGTTCTTGGCGCGCGTCGGCCTCGGTGA
TTTGGGCCCTCGGCATTTCGGAAGTATCATCAAACGGCCGGGAGAATTGT
GGGGGGCGTTGAGCAAGGAGGCAGCGATCGAGTTGGGCCTGCGCCCCGCC
CTGGAACCCCCCTCCCCCTCTTCCTCCCCTTCGCCCCCTTTCCCTGCCAT
TGTGGTGGCAGTCGGGGCAGTAGATGCGTTTGCAGGTGCCATCGGTTCCC
TGGACACGCCCATAGCCCGCTGCCCCCAGAATACGCCGGTCATGCACGGT
CCAGAGGGATGCATGGAAGTCGTGCCGACGGCGGCCCGCCTTGCCTTAAT
CTGTGGGACCTCCACCTGCCACCTGGTGTGCTCGTCCCAGCCCGTGTTCT
GCCCCAACGTCTGGGGGCCGTTCTATGACGTGCTGGGCACGGGTATGTGG
GTGAACGAGGGAGGCATCTCGGCTTCGGGGAAACTCCTCGACCGTTTCCT
CCAGACCCATCCCGCCTGGGCGGACGTCAAAGAAAAAGCCCGACAAGAGA
CGGCTGGCTCCGGGCACGTCCACGACTACCTGCACCGGCTCCTGGTCAAC
ATGGCGGAGGCGGAGGGACTCCCCAACCTGGCTTTCTTGACCTCCTGCCT
CCACGTCGGGCCCGATGTGGCCGGAAACCGGAGCCCCGTCGGCGACCCGG
ATTTACGCGGTAGCGTGATTGGGGTGACCCTGGACGGGACCTCGGCGGAA
TCCATAGCCTTGCTCTACTTGGCCTCCCTTCAATCCTTGGCACTGGGAAG
CAAGCACATCATGTCCGCCCTGGAATCGGCGGGCCATCCGGAAAAGATCA
CCCACCTCGTGGTCTCGGGTGGTTTGGGCCGACACAATACCCTCTTCTGT
CAAATCCACGCCGACGTGACCGGATGCACGCTGGTCCTGCCCCCTGCTCG
GACAGAGGGCGTCTTATTGGGCAGTGCCATGCTGGCAGCGACGGCGTCGA
ACCGGTTCAAGTCCGTGAAGGAAGCCATGCGTGCTATGGCGGGAGGGCAA
GGCACATGTGTGCACCCGTCCCAGGACCCGCGGGTACGTACTTTTTATAA
AGGCAAGGAAGCTGTGTACCATGACATGTGGAAACGGCAGCTCCAGTACC
GGAGGTGGATGGAGGACGCGATGGCTGACATTTGTGAAGGAGGCTTAGCC
AGTGCCCAAAGAAGGCCCGAGGGAAGAAAAAGAGAGTAATGTGCTTGTAT

protein sequence of rna7500

>rna7500-protein ID=rna7500-protein|Name=rna7500|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MDPIVTHLRLQLRYNAKNRCVELKTSPETPDLSAIQKGADFLHAFMMGFE
VQDAIALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRIAGQAGKTRFAIE
NATRTRIVVADQHVHILGSFANIKLARDAICALILGAPPGKVYNQLRQTS
KRLAERF

mRNA from alignment at CM002472.1:103569..104935+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7500 ID=rna7500|Name=rna7500|organism=Nannochloropsis gaditana|type=mRNA|length=1367bp|location=Sequence derived from alignment at CM002472.1:103569..104935+ (Nannochloropsis gaditana)
CCTCGTATCTTCTGCCGTGGGTGGTAGCCCGTTCTCCGTGCAAAGCGTAC
ACGAATACCGCGCTTGAAAGGGAAATCGGTCCAAAGTCCCGCACGCATAT
ACATTGGTGTGTACCTATGGACGAAGGAATAGCAAGATCTGAACTGCTCG
TCCCGTTTTCCTTTTTATTGCCCGCAGAACCAAAGGTGACCATGGCCATC
GACGAAGAGATGCTTGTGGTGGAACCCAAGCAAGTGGAGGAGCGGATGGA
GCAGGATGATGACACACCGGCCGACCCTACCACAGCGTCTCGCCCGCAAT
ATAAGCCTCTACCAGCAAGTGAAATGGAGGTACGTGCATGTGCGATgagg
gaaaggcaaggattggggaagaagaggagggggtaggaggagagaaTGTT
GAGAGAGGGACCAATAGTGTAGAATTAAAAACCGATACTTGAGGAGCGAT
CGAGTCAAAGCAATCGATGGTAGACCATTTCGAATGTTTGTGTGTCCCTG
CGTGCTGCGCGGTTTCCATTTGGTTGTCGATACTATGATGAGTTAAGCAA
AAATCACCATCTTTCGATTGAGCGCCCTACACAAGCGCATTGAAACGGAA
ATTAGCCGGCATTTATGTGCCCCTGATACATCGACGCCACCCTTATGCTC
CAAGCAACCCGGACACATTGCGCACGTGTGTTCTCACGCACAACCACAAG
CTTGGCGGTACTCAccctgatccctccctccctccctccctccctccctc
cctccctccctcccttcccctccgccctcccccctctctcctgccatCAC
TACCCACCAGGGCGGACGCGCGGCGTACCGACGTGTCCGTGTCCCCCCCA
ACCGGTTGACCCCTCTCAAGCAGCAGTGGGAAGCCATCATGGATCCCATC
GTCACTCACCTCCGTCTCCAGCTCCGTTACAACGCCAAGAACCGTTGCGT
GGAACTGAAAACTTCCCCGGAAACCCCCGACCTCTCCGCCATCCAGAAGG
GCGCCGATTTCCTTCACGCCTTCATGATGGGCTTCGAAGTCCAGGACGcg
atcgccctcctccggcttgAGGACTTATTCATCGATTCGTTCATGGTCAC
GGACGTGAAATTGTTAAGCGGGGATCACTTGTCCCGAGCCATCGGGCGGA
TCGCAGGGCAGGCGGGCAAGACGCGGTTTGCGATCGAAAATGCGACCCGG
ACGCGGATCGTGGTGGCGGACCAGCACGTCCACATCCTCGGATCCTTTGC
CAACATCAAGTTGGCTCGAGACGCTATCTGCGCGCTCATCTTGGGGGCGC
CCCCCGGGAAGGTCTACAACCAGCTTCGGCAGACGAGCAAGAGGTTGGCC
GAGCGCTTTTAGGAGGG

Coding sequence (CDS) from alignment at CM002472.1:103569..104935+

>rna7500 ID=rna7500|Name=rna7500|organism=Nannochloropsis gaditana|type=CDS|length=474bp|location=Sequence derived from alignment at CM002472.1:103569..104935+ (Nannochloropsis gaditana)
ATGGATCCCATCGTCACTCACCTCCGTCTCCAGCTCCGTTACAACGCCAA
GAACCGTTGCGTGGAACTGAAAACTTCCCCGGAAACCCCCGACCTCTCCG
CCATCCAGAAGGGCGCCGATTTCCTTCACGCCTTCATGATGGGCTTCGAA
GTCCAGGACGcgatcgccctcctccggcttgAGGACTTATTCATCGATTC
GTTCATGGTCACGGACGTGAAATTGTTAAGCGGGGATCACTTGTCCCGAG
CCATCGGGCGGATCGCAGGGCAGGCGGGCAAGACGCGGTTTGCGATCGAA
AATGCGACCCGGACGCGGATCGTGGTGGCGGACCAGCACGTCCACATCCT
CGGATCCTTTGCCAACATCAAGTTGGCTCGAGACGCTATCTGCGCGCTCA
TCTTGGGGGCGCCCCCCGGGAAGGTCTACAACCAGCTTCGGCAGACGAGC
AAGAGGTTGGCCGAGCGCTTTTAG

Synonyms

Publications