EWM23192.1, cds7482 (CDS) Nannochloropsis gaditana

Overview
NameEWM23192.1
Unique Namecds7482
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:104457..104930 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23192.1
Productrna-binding protein pno1
Orig transcript idgnl|cribi|Naga_100485g1.10093.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:104457..104930 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR004087KH_dom
Homology
[Close]
BLAST of EWM23192.1 vs. NCBI_GenBank
Match: gi|585104085|gb|EWM23192.1| (rna-binding protein pno1 [Nannochloropsis gaditana])

HSP 1 Score: 322.398 bits (825), Expect = 1.507e-111
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0 
Query:    1 MDPIVTHLRLQLRYNAKNRCVELKTSPETPDLSAIQKGADFLHAFMMGFEVQDAIALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRIAGQAGKTRFAIENATRTRIVVADQHVHILGSFANIKLARDAICALILGAPPGKVYNQLRQTSKRLAERF 157
            MDPIVTHLRLQLRYNAKNRCVELKTSPETPDLSAIQKGADFLHAFMMGFEVQDAIALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRIAGQAGKTRFAIENATRTRIVVADQHVHILGSFANIKLARDAICALILGAPPGKVYNQLRQTSKRLAERF
Sbjct:    1 MDPIVTHLRLQLRYNAKNRCVELKTSPETPDLSAIQKGADFLHAFMMGFEVQDAIALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRIAGQAGKTRFAIENATRTRIVVADQHVHILGSFANIKLARDAICALILGAPPGKVYNQLRQTSKRLAERF 157
[Close]
BLAST of EWM23192.1 vs. NCBI_GenBank
Match: gi|675163511|ref|XP_008890640.1| (hypothetical protein PPTG_00838 [Phytophthora parasitica INRA-310] >gi|566033528|gb|ETI56439.1| hypothetical protein F443_00983 [Phytophthora parasitica P1569] >gi|567971219|gb|ETK96230.1| hypothetical protein L915_00922 [Phytophthora parasitica] >gi|567999565|gb|ETL49601.1| hypothetical protein L916_00909 [Phytophthora parasitica] >gi|568028783|gb|ETM02719.1| hypothetical protein L917_00877 [Phytophthora parasitica] >gi|568059346|gb|ETM55922.1| hypothetical protein L914_00916 [Phytophthora parasitica] >gi|568109976|gb|ETN24583.1| hypothetical protein PPTG_00838 [Phytophthora parasitica INRA-310] >gi|570337299|gb|ETO85247.1| hypothetical protein F444_00991 [Phytophthora parasitica P1976] >gi|570961297|gb|ETP26276.1| hypothetical protein F441_00958 [Phytophthora parasitica CJ01A1] >gi|570997982|gb|ETP54263.1| hypothetical protein F442_00935 [Phytophthora parasitica P10297] >gi|970658480|gb|KUF96239.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora nicotianae] >gi|970663112|gb|KUG00362.1| RNA-binding protein PNO1 protein [Phytophthora nicotianae])

HSP 1 Score: 256.144 bits (653), Expect = 2.797e-84
Identity = 115/157 (73.25%), Postives = 136/157 (86.62%), Query Frame = 0 
Query:    1 MDPIVTHLRLQLRYNAKNRCVELKTSPETPDLSAIQKGADFLHAFMMGFEVQDAIALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRIAGQAGKTRFAIENATRTRIVVADQHVHILGSFANIKLARDAICALILGAPPGKVYNQLRQTSKRLAERF 157
            M PIV HL+LQ+R N K RC+ELK SP T D  A+QK ADF+ A+MMGFEVQDA+ALLRLEDLFID+F V DVK+L GDHLSRAIGR+AGQ GKT++A+ENATRTRIV+ADQ +HILGSFANIKLARDAIC+LI+GAPPGKVYN++R  + R+ ERF
Sbjct:   78 MKPIVEHLKLQIRMNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVNDVKMLKGDHLSRAIGRVAGQDGKTKYAVENATRTRIVLADQKIHILGSFANIKLARDAICSLIMGAPPGKVYNKMRNVASRMNERF 234
[Close]
BLAST of EWM23192.1 vs. NCBI_GenBank
Match: gi|1173951062|gb|OQR98975.1| (RNA-binding protein PNO1-like protein [Achlya hypogyna])

HSP 1 Score: 255.758 bits (652), Expect = 3.753e-84
Identity = 116/157 (73.89%), Postives = 138/157 (87.90%), Query Frame = 0 
Query:    1 MDPIVTHLRLQLRYNAKNRCVELKTSPETPDLSAIQKGADFLHAFMMGFEVQDAIALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRIAGQAGKTRFAIENATRTRIVVADQHVHILGSFANIKLARDAICALILGAPPGKVYNQLRQTSKRLAERF 157
            M PIV HL+LQ+R N K RC+ELK SP T D  A+QKGADF+ A+MMGFEVQDA+ALLRLEDLFID+F VTDVK+L GDHLSRAIGR+AGQ GKT++AIENATRTRIV+ADQ +HILGSF+NIKLARDAIC+LI+GAPPGKVYN+++  + R+ ERF
Sbjct:   73 MKPIVEHLKLQIRMNTKTRCIELKNSPLTEDAGALQKGADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVTDVKMLKGDHLSRAIGRLAGQDGKTKYAIENATRTRIVLADQKIHILGSFSNIKLARDAICSLIMGAPPGKVYNKMKNVANRMNERF 229
[Close]
BLAST of EWM23192.1 vs. NCBI_GenBank
Match: gi|1214681546|gb|OWZ00252.1| (RNA-binding protein PNO1 [Phytophthora megakarya])

HSP 1 Score: 255.758 bits (652), Expect = 4.625e-84
Identity = 115/157 (73.25%), Postives = 136/157 (86.62%), Query Frame = 0 
Query:    1 MDPIVTHLRLQLRYNAKNRCVELKTSPETPDLSAIQKGADFLHAFMMGFEVQDAIALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRIAGQAGKTRFAIENATRTRIVVADQHVHILGSFANIKLARDAICALILGAPPGKVYNQLRQTSKRLAERF 157
            M PIV HL+LQ+R N K RC+ELK SP T D  A+QK ADF+ A+MMGFEVQDA+ALLRLEDLFID+F V DVK+L GDHLSRAIGR+AGQ GKT++A+ENATRTRIV+ADQ +HILGSFANIKLARDAIC+LI+GAPPGKVYN++R  + R+ ERF
Sbjct:   76 MKPIVEHLKLQIRMNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVNDVKMLKGDHLSRAIGRVAGQDGKTKYAVENATRTRIVLADQKIHILGSFANIKLARDAICSLIMGAPPGKVYNKMRNVASRMNERF 232
[Close]
BLAST of EWM23192.1 vs. NCBI_GenBank
Match: gi|695404697|ref|XP_009523596.1| (hypothetical protein PHYSODRAFT_359998 [Phytophthora sojae] >gi|348681063|gb|EGZ20879.1| hypothetical protein PHYSODRAFT_359998 [Phytophthora sojae])

HSP 1 Score: 255.758 bits (652), Expect = 4.681e-84
Identity = 115/157 (73.25%), Postives = 136/157 (86.62%), Query Frame = 0 
Query:    1 MDPIVTHLRLQLRYNAKNRCVELKTSPETPDLSAIQKGADFLHAFMMGFEVQDAIALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRIAGQAGKTRFAIENATRTRIVVADQHVHILGSFANIKLARDAICALILGAPPGKVYNQLRQTSKRLAERF 157
            M PIV HL+LQ+R N K RC+ELK SP T D  A+QK ADF+ A+MMGFEVQDA+ALLRLEDLFID+F V DVK+L GDHLSRAIGR+AGQ GKT++A+ENATRTRIV+ADQ +HILGSFANIKLARDAIC+LI+GAPPGKVYN++R  + R+ ERF
Sbjct:   80 MKPIVEHLKLQIRMNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVNDVKMLKGDHLSRAIGRVAGQDGKTKYAVENATRTRIVLADQKIHILGSFANIKLARDAICSLIMGAPPGKVYNKMRNVASRMNERF 236
[Close]
BLAST of EWM23192.1 vs. NCBI_GenBank
Match: gi|669156970|ref|XP_008614047.1| (ribosomal RNA assembly protein [Saprolegnia diclina VS20] >gi|530734304|gb|EQC32546.1| ribosomal RNA assembly protein [Saprolegnia diclina VS20])

HSP 1 Score: 255.373 bits (651), Expect = 5.570e-84
Identity = 115/157 (73.25%), Postives = 138/157 (87.90%), Query Frame = 0 
Query:    1 MDPIVTHLRLQLRYNAKNRCVELKTSPETPDLSAIQKGADFLHAFMMGFEVQDAIALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRIAGQAGKTRFAIENATRTRIVVADQHVHILGSFANIKLARDAICALILGAPPGKVYNQLRQTSKRLAERF 157
            M PIV HL+LQ+R N K RC+ELK SP T D  A+QKGADF+ A+MMGFEVQDA+ALLRLEDLFID+F VTDVK+L GDHLSRA+GR+AGQ GKT++AIENATRTRIV+ADQ +HILGSF+NIKLARDAIC+LI+GAPPGKVYN+++  + R+ ERF
Sbjct:   76 MKPIVEHLKLQIRMNTKTRCIELKNSPLTEDAGALQKGADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVTDVKMLKGDHLSRAVGRLAGQDGKTKYAIENATRTRIVLADQKIHILGSFSNIKLARDAICSLIMGAPPGKVYNKMKNVANRMNERF 232
[Close]
BLAST of EWM23192.1 vs. NCBI_GenBank
Match: gi|813119968|ref|XP_012196381.1| (hypothetical protein SPRG_02415 [Saprolegnia parasitica CBS 223.65] >gi|641538896|gb|KDO32717.1| hypothetical protein SPRG_02415 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 255.373 bits (651), Expect = 5.632e-84
Identity = 115/157 (73.25%), Postives = 138/157 (87.90%), Query Frame = 0 
Query:    1 MDPIVTHLRLQLRYNAKNRCVELKTSPETPDLSAIQKGADFLHAFMMGFEVQDAIALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRIAGQAGKTRFAIENATRTRIVVADQHVHILGSFANIKLARDAICALILGAPPGKVYNQLRQTSKRLAERF 157
            M PIV HL+LQ+R N K RC+ELK SP T D  A+QKGADF+ A+MMGFEVQDA+ALLRLEDLFID+F VTDVK+L GDHLSRA+GR+AGQ GKT++AIENATRTRIV+ADQ +HILGSF+NIKLARDAIC+LI+GAPPGKVYN+++  + R+ ERF
Sbjct:   76 MKPIVEHLKLQIRMNTKTRCIELKNSPLTEDAGALQKGADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVTDVKMLKGDHLSRAVGRLAGQDGKTKYAIENATRTRIVLADQKIHILGSFSNIKLARDAICSLIMGAPPGKVYNKMKNVANRMNERF 232
[Close]
BLAST of EWM23192.1 vs. NCBI_GenBank
Match: gi|301121148|ref|XP_002908301.1| (RNA-binding protein PNO1-like protein [Phytophthora infestans T30-4] >gi|262103332|gb|EEY61384.1| RNA-binding protein PNO1-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 255.373 bits (651), Expect = 5.697e-84
Identity = 115/157 (73.25%), Postives = 136/157 (86.62%), Query Frame = 0 
Query:    1 MDPIVTHLRLQLRYNAKNRCVELKTSPETPDLSAIQKGADFLHAFMMGFEVQDAIALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRIAGQAGKTRFAIENATRTRIVVADQHVHILGSFANIKLARDAICALILGAPPGKVYNQLRQTSKRLAERF 157
            M PIV HL+LQ+R N K RC+ELK SP T D  A+QK ADF+ A+MMGFEVQDA+ALLRLEDLFID+F V DVK+L GDHLSRAIGR+AGQ GKT++A+ENATRTRIV+ADQ +HILGSFANIKLARDAIC+LI+GAPPGKVYN++R  + R+ ERF
Sbjct:   78 MKPIVEHLKLQIRMNTKTRCIELKNSPHTTDSGALQKAADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVNDVKMLKGDHLSRAIGRVAGQDGKTKYAVENATRTRIVLADQKIHILGSFANIKLARDAICSLIMGAPPGKVYNKMRNVASRMNERF 234
[Close]
BLAST of EWM23192.1 vs. NCBI_GenBank
Match: gi|953495752|emb|CEG42648.1| (rna-binding protein pno1-like protein [Plasmopara halstedii])

HSP 1 Score: 254.603 bits (649), Expect = 1.280e-83
Identity = 114/157 (72.61%), Postives = 136/157 (86.62%), Query Frame = 0 
Query:    1 MDPIVTHLRLQLRYNAKNRCVELKTSPETPDLSAIQKGADFLHAFMMGFEVQDAIALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRIAGQAGKTRFAIENATRTRIVVADQHVHILGSFANIKLARDAICALILGAPPGKVYNQLRQTSKRLAERF 157
            M PI+ HL+LQ+R N K RC+ELK SP T D  A+QK ADF+ A+MMGFEVQDA+ALLRLEDLFID+F V DVK+L GDHLSRAIGR+AGQ GKT++A+ENATRTRIV+ADQ +HILGSFANIKLARDAIC+LI+GAPPGKVYN++R  + R+ ERF
Sbjct:   78 MKPIIEHLKLQIRMNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVNDVKMLKGDHLSRAIGRVAGQDGKTKYAVENATRTRIVLADQKIHILGSFANIKLARDAICSLIMGAPPGKVYNKMRNVASRMNERF 234
[Close]
BLAST of EWM23192.1 vs. NCBI_GenBank
Match: gi|698820615|ref|XP_009843336.1| (hypothetical protein H257_16568 [Aphanomyces astaci] >gi|574101609|gb|ETV67171.1| hypothetical protein H257_16568 [Aphanomyces astaci])

HSP 1 Score: 252.677 bits (644), Expect = 5.366e-83
Identity = 114/157 (72.61%), Postives = 137/157 (87.26%), Query Frame = 0 
Query:    1 MDPIVTHLRLQLRYNAKNRCVELKTSPETPDLSAIQKGADFLHAFMMGFEVQDAIALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRIAGQAGKTRFAIENATRTRIVVADQHVHILGSFANIKLARDAICALILGAPPGKVYNQLRQTSKRLAERF 157
            M P+V HL+LQ+R N K RCVELK  P T D  A+QKGADF+ A+MMGFEVQDA+ALLRLEDLF+D+F VTDVK+L GDHLSRAIGR+AGQ GKT++AIENATRTR+V+ADQ VHILGSF+NIKLARDAIC+LI+GAPPGKVYN+++  + R+ ERF
Sbjct:   75 MKPLVEHLKLQVRMNMKTRCVELKNGPHTDDAGALQKGADFVQAYMMGFEVQDAVALLRLEDLFVDTFEVTDVKMLKGDHLSRAIGRLAGQDGKTKYAIENATRTRVVLADQKVHILGSFSNIKLARDAICSLIMGAPPGKVYNKMKNVATRMNERF 231
The following BLAST results are available for this feature:
BLAST of EWM23192.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104085|gb|EWM23192.1|1.507e-111100.00rna-binding protein pno1 [Nannochloropsis gaditana... [more]
gi|675163511|ref|XP_008890640.1|2.797e-8473.25hypothetical protein PPTG_00838 [Phytophthora para... [more]
gi|1173951062|gb|OQR98975.1|3.753e-8473.89RNA-binding protein PNO1-like protein [Achlya hypo... [more]
gi|1214681546|gb|OWZ00252.1|4.625e-8473.25RNA-binding protein PNO1 [Phytophthora megakarya][more]
gi|695404697|ref|XP_009523596.1|4.681e-8473.25hypothetical protein PHYSODRAFT_359998 [Phytophtho... [more]
gi|669156970|ref|XP_008614047.1|5.570e-8473.25ribosomal RNA assembly protein [Saprolegnia diclin... [more]
gi|813119968|ref|XP_012196381.1|5.632e-8473.25hypothetical protein SPRG_02415 [Saprolegnia paras... [more]
gi|301121148|ref|XP_002908301.1|5.697e-8473.25RNA-binding protein PNO1-like protein [Phytophthor... [more]
gi|953495752|emb|CEG42648.1|1.280e-8372.61rna-binding protein pno1-like protein [Plasmopara ... [more]
gi|698820615|ref|XP_009843336.1|5.366e-8372.61hypothetical protein H257_16568 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7500rna7500Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications