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Properties
| Property Name | Value |
|---|
| Product | r-snare vamp72-family |
| Orig transcript id | gnl|cribi|Naga_100485g4.10092.mrna |
| Orig protein id | gnl|cribi|Naga_100485g4.10092 |
| Gene | SNR6 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002472.1 | supercontig | CM002472.1:96899..98269 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7497 ID=rna7497|Name=rna7497|organism=Nannochloropsis gaditana|type=mRNA|length=661bp
CTGAAAAATATGCGCCGGATAGGAGGGAGGAGGTAAGCAAAGGACCGAGA
ATGGTCAACGGGGCAAGAATTCGGATACTGAGCAAGAAAAAAGACATTGA
AGGAAGTTAACGCACCTGTCGCCTGATTTTCTCCGCGTAGGCCTCCTCCA
TTGTGCGGGGCAGCAACAACGACGGCTATTGACTCCCTCTTCTCGCAGTA
AACAAGATCATCGTCCTGCCATTGTGTGCACATAACGAGAGGAGAAGAGA
CCAGAGGGTGTGATTTTGGGCATCGACTCTTCCATGGGCAGCCGGCCACG
GCTTTTCCCCCTCCTCGCCCTCCTCCTTCTCCAGACGACAGCTTCTTTCC
ATCGTCTCCCGGCCCCGCTCGCCTCCACTTCTAACAAGTCGCCTTCCTTT
CGAGCAGAACGCTCGAGCTCGTCCTGTGCATTCGGTGGGGCGGTGGTTGC
TCCTTCTGTCCTGCCGTGCGACCACCTTGTTTCCTGCCCGTGGAGGAAGA
AGGGTACGATGATGAGGGCAACGACAGAGAAGGAAGAAGCGGCGCGGGAC
GAGGAAGAGGAACGGAGGGCAGAGGCAGCTCGGCAATTGTCGCTTGAATT
GGAGAAGGAGCGGAGCCAAGTAGAGGCCTCGTCCAGAATGGCGCGTTTAC
AGGAGGTGGGA back to topprotein sequence of rna7497 >rna7497-protein ID=rna7497-protein|Name=rna7497|organism=Nannochloropsis gaditana|type=polypeptide|length=291bp
MSAGPRTEIFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEANL
RQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHH
TREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKV
DATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQ
WEAIRCGAGREGSREGGRDTGKKKKRLSDGPQGVHLSHILRPTYLPTYLP
PPPPPSQLADRRPPRLCPLPLHCPLPHHSCRPESSRSNPPT back to topmRNA from alignment at CM002472.1:96899..98269+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7497 ID=rna7497|Name=rna7497|organism=Nannochloropsis gaditana|type=mRNA|length=1371bp|location=Sequence derived from alignment at CM002472.1:96899..98269+ (Nannochloropsis gaditana)
TTTTGGCCTTGTCCATTGACCAAATTGTCTTTACTTCTTTCTCATCGTTT
CTGaccattttccttttttataGCACGCGAAAGCATCAAGGGTAAATGAG
TGCAGGGCCCCGCACTGAGATTTTTGTTCTTGGTGTAGTTCGGGTCATTG
ACCGCAAACTTCTCTCCTCCtactcgtcctcctcattccaccCTTCGCTC
CTGGTCAGTCTCGCTGCTGCTTATCCAGCTTTCGAAGCAAATTTGCGCCA
AAGCAAAGAGTGCTCTGATTCAAATTTCCATTCCCTCGTCGATGACGGAG
GTCTACTTTATGCTTGCCTGTCAGCCAAAAACTATCCATCTCGCCTTATC
TTCACTTTGCTTGAAGAGATCCAAGAAAACTTCGTAGCGCATCATACCCG
GGAGCAGATAGACAAAGCTGAAGAAGGTGGGAGCAAGGAAAATGGACAAT
TCTCGAAGCAAGACAAGAGCTGGCTGCAGGGCCTAGCCAAAAAGTATCGG
GAGGCCGCCTGCGTGGACAAGCTGCAGTCGATTCAAAAGAAGGTAGAGGT
CTCATgaaccctccccctcattttGCTTTAAAGCCCTTCAAACTTACCCC
CGATTTGTCCTGTGCCAAATTAACTCAATGTTTTCACCAATAGGTGGACG
CTACATGTGGGACCATGCAAGACTCGATCGCAACACTCCTCGAAAGTGAC
GGTGCGTGCGctacctccttctcgccttcaACTTCCAACTCGTTTCAGTC
TCCCGCTTAATGCTCAAATCTCTGTgctgcctctttttccttctttcagA
CACACTAGAGTCCTTGACAAATGCTACCGAGTCTCTCTCTCACCAAGCCA
AGGCTTTCCATCGCCGGACCTCCGCCTTACGGTCCAGGGTCCAATGGGAG
GCAATCCGGTgcggagcagggagggagggaagcagggaaggaggaaggga
cacaggaaaaaagaaaaagagactCTCCGACGGTCCTCAAGGAGTCCATT
TATCTCACATTCTACGacctacctacctacctacctacctcccccccccc
ccccccccttcgcagCTGGCGgatcgccgtcctcctcgtctttgccctct
ccctctccattgtcctcttccccatcatTCTTGCCGCCCGGAATCCTCGC
GATCCAATCCTCCCACTTGACTCTGCCCCATCATCCGCGGCGCTGGCGCC
AagaatgggggagggaggggagcagccACTGCCTGCAGAGTaagcgggat
ggagggatggagggagggagggatggagggatggagggagggagggaggg
ggccatTGTGCGTCTACAACCGCATCAGGGTGGAAGCGCGTGCATGGTGG
GTGTgccaggggaggggcaga back to topCoding sequence (CDS) from alignment at CM002472.1:96899..98269+ >rna7497 ID=rna7497|Name=rna7497|organism=Nannochloropsis gaditana|type=CDS|length=2628bp|location=Sequence derived from alignment at CM002472.1:96899..98269+ (Nannochloropsis gaditana)
ATGAGTGCAGGGCCCCGCACTGAGATTTTTGTTCTTGGTGTAGTTCGGGT
CATTGACCGCAAACTTCTCTCCTCCtactcgtcctcctcattccaccCTT
CGCTCCTGGTCAGTCTCGCTGCTGCTTATCCAGCTTTCGAAGCAAATTTG
CGCCAAAGCAAAGAGTGCTCTGATTCAAATTTCCATTCCCTCGTCGATGA
CGGAGGTCTACTTTATGCTTGCCTGTCAGCCAAAAACTATCCATCTCGCC
TTATCTTCACTTTGCTTGAAGAGATCCAAGAAAACTTCGTAGCGCATCAT
ACCCGGGAGCAGATAGACAAAGCTGAAGAAGGTGGGAGCAAGGAAAATGG
ACAATTCTCGAAGCAAGACAAGAGCTGGCTGCAGGGCCTAGCCAAAAAGT
ATCGGGAGGCCGCCTGCGTGGACAAGCTGCAGTCGATTCAAAAGAAGGTG
GACGCTACATGTGGGACCATGCAAGACTCGATCGCAACACTCCTCGAAAG
TGACGACACACTAGAGTCCTTGACAAATGCTACCGAGTCTCTCTCTCACC
AAGCCAAGGCTTTCCATCGCCGGACCTCCGCCTTACGGTCCAGGGTCCAA
TGGGAGGCAATCCGGTgcggagcagggagggagggaagcagggaaggagg
aagggacacaggaaaaaagaaaaagagactCTCCGACGGTCCTCAAGGAG
TCCATTTATCTCACATTCTACGacctacctacctacctacctacctcccc
ccccccccccccccttcgcagCTGGCGgatcgccgtcctcctcgtctttg
ccctctccctctccattgtcctcttccccatcatTCTTGCCGCCCGGAAT
CCTCGCGATCCAATCCTCCCACTTGAATGAGTGCAGGGCCCCGCACTGAG
ATTTTTGTTCTTGGTGTAGTTCGGGTCATTGACCGCAAACTTCTCTCCTC
CtactcgtcctcctcattccaccCTTCGCTCCTGGTCAGTCTCGCTGCTG
CTTATCCAGCTTTCGAAGCAAATTTGCGCCAAAGCAAAGAGTGCTCTGAT
TCAAATTTCCATTCCCTCGTCGATGACGGAGGTCTACTTTATGCTTGCCT
GTCAGCCAAAAACTATCCATCTCGCCTTATCTTCACTTTGCTTGAAGAGA
TCCAAGAAAACTTCGTAGCGCATCATACCCGGGAGCAGATAGACAAAGCT
GAAGAAGGTGGGAGCAAGGAAAATGGACAATTCTCGAAGCAAGACAAGAG
CTGGCTGCAGGGCCTAGCCAAAAAGTATCGGGAGGCCGCCTGCGTGGACA
AGCTGCAGTCGATTCAAAAGAAGGTGGACGCTACATGTGGGACCATGCAA
GACTCGATCGCAACACTCCTCGAAAGTGACGACACACTAGAGTCCTTGAC
AAATGCTACCGAGTCTCTCTCTCACCAAGCCAAGGCTTTCCATCGCCGGA
CCTCCGCCTTACGGTCCAGGGTCCAATGGGAGGCAATCCGGTgcggagca
gggagggagggaagcagggaaggaggaagggacacaggaaaaaagaaaaa
gagactCTCCGACGGTCCTCAAGGAGTCCATTTATCTCACATTCTACGac
ctacctacctacctacctacctccccccccccccccccccttcgcagCTG
GCGgatcgccgtcctcctcgtctttgccctctccctctccattgtcctct
tccccatcatTCTTGCCGCCCGGAATCCTCGCGATCCAATCCTCCCACTT
GAATGAGTGCAGGGCCCCGCACTGAGATTTTTGTTCTTGGTGTAGTTCGG
GTCATTGACCGCAAACTTCTCTCCTCCtactcgtcctcctcattccaccC
TTCGCTCCTGGTCAGTCTCGCTGCTGCTTATCCAGCTTTCGAAGCAAATT
TGCGCCAAAGCAAAGAGTGCTCTGATTCAAATTTCCATTCCCTCGTCGAT
GACGGAGGTCTACTTTATGCTTGCCTGTCAGCCAAAAACTATCCATCTCG
CCTTATCTTCACTTTGCTTGAAGAGATCCAAGAAAACTTCGTAGCGCATC
ATACCCGGGAGCAGATAGACAAAGCTGAAGAAGGTGGGAGCAAGGAAAAT
GGACAATTCTCGAAGCAAGACAAGAGCTGGCTGCAGGGCCTAGCCAAAAA
GTATCGGGAGGCCGCCTGCGTGGACAAGCTGCAGTCGATTCAAAAGAAGG
TGGACGCTACATGTGGGACCATGCAAGACTCGATCGCAACACTCCTCGAA
AGTGACGACACACTAGAGTCCTTGACAAATGCTACCGAGTCTCTCTCTCA
CCAAGCCAAGGCTTTCCATCGCCGGACCTCCGCCTTACGGTCCAGGGTCC
AATGGGAGGCAATCCGGTgcggagcagggagggagggaagcagggaagga
ggaagggacacaggaaaaaagaaaaagagactCTCCGACGGTCCTCAAGG
AGTCCATTTATCTCACATTCTACGacctacctacctacctacctacctcc
ccccccccccccccccttcgcagCTGGCGgatcgccgtcctcctcgtctt
tgccctctccctctccattgtcctcttccccatcatTCTTGCCGCCCGGA
ATCCTCGCGATCCAATCCTCCCACTTGA back to top
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