EWM23191.1, cds7479 (CDS) Nannochloropsis gaditana

Overview
NameEWM23191.1
Unique Namecds7479
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:96994..97440 +
Alignment locationCM002472.1:97542..97599 +
Alignment locationCM002472.1:97698..98068 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23191.1
Productr-snare vamp72-family
Orig transcript idgnl|cribi|Naga_100485g4.10092.mrna
GeneSNR6
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:96994..97440 +
CM002472.1supercontigCM002472.1:97542..97599 +
CM002472.1supercontigCM002472.1:97698..98068 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR001388Synaptobrevin
IPR010908Longin_dom
Homology
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|585104084|gb|EWM23191.1| (r-snare vamp72-family [Nannochloropsis gaditana])

HSP 1 Score: 599.356 bits (1544), Expect = 0.000e+0
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0
Query:    1 MSAGPRTEIFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEANLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIRCGAGREGSREGGRDTGKKKKRLSDGPQGVHLSHILRPTYLPTYLPPPPPPSQLADRRPPRLCPLPLHCPLPHHSCRPESSRSNPPT 291
            MSAGPRTEIFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEANLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIRCGAGREGSREGGRDTGKKKKRLSDGPQGVHLSHILRPTYLPTYLPPPPPPSQLADRRPPRLCPLPLHCPLPHHSCRPESSRSNPPT
Sbjct:    1 MSAGPRTEIFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEANLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIRCGAGREGSREGGRDTGKKKKRLSDGPQGVHLSHILRPTYLPTYLPPPPPPSQLADRRPPRLCPLPLHCPLPHHSCRPESSRSNPPT 291          
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|299473043|emb|CBN77436.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE), Vesicle-associated membrane protein [Ectocarpus siliculosus])

HSP 1 Score: 105.145 bits (261), Expect = 1.850e-23
Identity = 71/199 (35.68%), Postives = 111/199 (55.78%), Query Frame = 0
Query:    9 IFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPA--FEANLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
            I  LGV+R  DR L++ YS S    SL++    + P    E   R S E    + H + DD   +Y+C++ K YP+R+ FTLLEE Q  F+     + +  A+EGG       S+  KS    L  KY +   VD++ ++Q KVD    TMQD+I  +L +++ L+ ++   E+L+ QAK F  R+SALR +++ +AI+
Sbjct:    5 ITFLGVIRFTDRVLVAGYSPSEADDSLIIKELMSNPDTFVEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSL-TAKEGG------LSRTMKSSFSDLCIKYDDIRNVDRMAAVQDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIK 196          
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|325183073|emb|CCA17529.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 84.3445 bits (207), Expect = 2.039e-15
Identity = 60/213 (28.17%), Postives = 98/213 (46.01%), Query Frame = 0
Query:    9 IFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLA--AAYPAFEA--------------NLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
            I  +GV R  D+ ++  Y  S+   S  V LA  A +    A              N R S +C  + FH  + +  L++A ++ K+YP RL F L++ +Q+ FV     + ++  E G  KE        KS +Q LA +Y +   VDK+  +  +VD     M  +I  +L + + +E +   T  LS QAK F      LR  + W+ ++
Sbjct:   43 IKFIGVARATDKAIICCYFHSA-KASTNVDLAECAKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALNCREHGLDKEC-------KSMMQTLANQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVK 247          
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|1072235835|gb|OEU20563.1| (synaptobrevin-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 83.1889 bits (204), Expect = 4.542e-15
Identity = 47/150 (31.33%), Postives = 81/150 (54.00%), Query Frame = 0
Query:   59 SNFHSLV---DDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
            S+ H +V   D  GL  A ++   YPSR+  T+L ++   F A H       AE          SK+ K  L+   KK+ + + VDK Q +  +VDA  G MQD+IA++L++ +  + +   +E L+ QA  F +R++ L+ ++QW+ ++
Sbjct:   80 SDQHQIVYGADVDGLCVATITGTQYPSRVAITMLTDLYTTFSAKHGDAAKTAAEN-------SLSKKAKKVLEDSCKKFADPSSVDKAQQVLGQVDAVKGQMQDNIASMLKNTEKADDMAAKSEQLNEQASVFKKRSTDLKKQMQWKNLK 222          
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|669145366|ref|XP_008608245.1| (hypothetical protein SDRG_04350 [Saprolegnia diclina VS20] >gi|530740411|gb|EQC38653.1| hypothetical protein SDRG_04350 [Saprolegnia diclina VS20])

HSP 1 Score: 82.4185 bits (202), Expect = 1.031e-14
Identity = 59/201 (29.35%), Postives = 96/201 (47.76%), Query Frame = 0
Query:   12 LGVVRVIDRKLLSSYS-------SSSFHPSLLVSLAAAYPAFEA----NLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQW 201
            L V R  D+ +++SY+        S  +  +L  +  A P ++     N R + +C  + FH  +D+  ++Y  ++A +YP RL F LL  +QE     H   ++   +EGG        K+    L  +A  Y +   VDKL  +  +VDA   TMQ++I  +L + + +E +   +  LS QAK F R T    SR  W
Sbjct:   11 LAVARGSDKAIIASYAHTKKDKEESPKYLDMLTKVLRA-PTWKQQVAPNSRHTLDCEPNKFHFTMDNDEIVYVAITAADYPVRLAFKLLAAVQEEMTGKHA-AKLPTVKEGG------LDKECAKGLSVIATTYDDRTKVDKLAEVMAQVDAVKSTMQENIQVVLSNTEKMEMVEQKSNDLSEQAKVF-RNTGKSLSRAMW 202          
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|635364142|emb|CCI47366.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 84.3445 bits (207), Expect = 1.273e-14
Identity = 58/213 (27.23%), Postives = 96/213 (45.07%), Query Frame = 0
Query:    9 IFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEA----------------NLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
            I  +G+ R  D+ ++  Y  S+   S+ V LA      E                 N R S +C  + FH  + +  L++A ++ K+YP RL F L++ +Q+ FV     + +   E G  KE        KS +Q LA +Y +   VDK+  +  +VD     M  +I  +L + + +E +   T  LS QAK F      LR  + W+ ++
Sbjct:  536 IKFIGIARATDKAIICCYFHSN-KSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKEC-------KSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVK 740          
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|635364143|emb|CCI47367.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 83.9593 bits (206), Expect = 1.837e-14
Identity = 58/213 (27.23%), Postives = 96/213 (45.07%), Query Frame = 0
Query:    9 IFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEA----------------NLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
            I  +G+ R  D+ ++  Y  S+   S+ V LA      E                 N R S +C  + FH  + +  L++A ++ K+YP RL F L++ +Q+ FV     + +   E G  KE        KS +Q LA +Y +   VDK+  +  +VD     M  +I  +L + + +E +   T  LS QAK F      LR  + W+ ++
Sbjct:  467 IKFIGIARATDKAIICCYFHSN-KSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKEC-------KSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVK 671          
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|635364144|emb|CCI47368.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 83.9593 bits (206), Expect = 1.938e-14
Identity = 58/213 (27.23%), Postives = 96/213 (45.07%), Query Frame = 0
Query:    9 IFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEA----------------NLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
            I  +G+ R  D+ ++  Y  S+   S+ V LA      E                 N R S +C  + FH  + +  L++A ++ K+YP RL F L++ +Q+ FV     + +   E G  KE        KS +Q LA +Y +   VDK+  +  +VD     M  +I  +L + + +E +   T  LS QAK F      LR  + W+ ++
Sbjct:  463 IKFIGIARATDKAIICCYFHSN-KSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKEC-------KSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVK 667          
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|635364145|emb|CCI47369.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 83.5741 bits (205), Expect = 2.714e-14
Identity = 58/213 (27.23%), Postives = 96/213 (45.07%), Query Frame = 0
Query:    9 IFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEA----------------NLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
            I  +G+ R  D+ ++  Y  S+   S+ V LA      E                 N R S +C  + FH  + +  L++A ++ K+YP RL F L++ +Q+ FV     + +   E G  KE        KS +Q LA +Y +   VDK+  +  +VD     M  +I  +L + + +E +   T  LS QAK F      LR  + W+ ++
Sbjct:  433 IKFIGIARATDKAIICCYFHSN-KSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKEC-------KSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVK 637          
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|546323088|ref|XP_005717971.1| (VAMP7b [Chondrus crispus] >gi|507114558|emb|CDF38102.1| VAMP7b [Chondrus crispus])

HSP 1 Score: 80.4925 bits (197), Expect = 3.018e-14
Identity = 44/141 (31.21%), Postives = 79/141 (56.03%), Query Frame = 0
Query:   67 DGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIRCG 207
            D  L+Y  ++A NYP R  F LL E +  F      EQ  K E  G K +G  +K  K +L+ +  +Y + A  DK+ S+  +VD   G MQ +I   L++ + LE+L ++++++ ++A  F+R T   + R++W++++  
Sbjct:   68 DPALVYLVITATNYPQRTAFKLLSEARAEF------EQEFKTELAGGKNDG-VAKVAKPFLKRMMDRYEDVAREDKISSVALQVDQVKGLMQTNIQAALKNQENLETLLDSSDTMRNEASTFNRSTKDAKERMRWKSLKMN 201          
The following BLAST results are available for this feature:
BLAST of EWM23191.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104084|gb|EWM23191.1|0.000e+0100.00r-snare vamp72-family [Nannochloropsis gaditana][more]
gi|299473043|emb|CBN77436.1|1.850e-2335.68Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
gi|325183073|emb|CCA17529.1|2.039e-1528.17conserved hypothetical protein [Albugo laibachii N... [more]
gi|1072235835|gb|OEU20563.1|4.542e-1531.33synaptobrevin-domain-containing protein [Fragilari... [more]
gi|669145366|ref|XP_008608245.1|1.031e-1429.35hypothetical protein SDRG_04350 [Saprolegnia dicli... [more]
gi|635364142|emb|CCI47366.1|1.273e-1427.23unnamed protein product [Albugo candida][more]
gi|635364143|emb|CCI47367.1|1.837e-1427.23unnamed protein product [Albugo candida][more]
gi|635364144|emb|CCI47368.1|1.938e-1427.23unnamed protein product [Albugo candida][more]
gi|635364145|emb|CCI47369.1|2.714e-1427.23unnamed protein product [Albugo candida][more]
gi|546323088|ref|XP_005717971.1|3.018e-1431.21VAMP7b [Chondrus crispus] >gi|507114558|emb|CDF381... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7497rna7497Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications