EWM23191.1, cds7479 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|585104084|gb|EWM23191.1| (r-snare vamp72-family [Nannochloropsis gaditana]) HSP 1 Score: 599.356 bits (1544), Expect = 0.000e+0 Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0
Query: 1 MSAGPRTEIFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEANLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIRCGAGREGSREGGRDTGKKKKRLSDGPQGVHLSHILRPTYLPTYLPPPPPPSQLADRRPPRLCPLPLHCPLPHHSCRPESSRSNPPT 291
MSAGPRTEIFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEANLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIRCGAGREGSREGGRDTGKKKKRLSDGPQGVHLSHILRPTYLPTYLPPPPPPSQLADRRPPRLCPLPLHCPLPHHSCRPESSRSNPPT
Sbjct: 1 MSAGPRTEIFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEANLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIRCGAGREGSREGGRDTGKKKKRLSDGPQGVHLSHILRPTYLPTYLPPPPPPSQLADRRPPRLCPLPLHCPLPHHSCRPESSRSNPPT 291
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|299473043|emb|CBN77436.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE), Vesicle-associated membrane protein [Ectocarpus siliculosus]) HSP 1 Score: 105.145 bits (261), Expect = 1.850e-23 Identity = 71/199 (35.68%), Postives = 111/199 (55.78%), Query Frame = 0
Query: 9 IFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPA--FEANLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
I LGV+R DR L++ YS S SL++ + P E R S E + H + DD +Y+C++ K YP+R+ FTLLEE Q F+ + + A+EGG S+ KS L KY + VD++ ++Q KVD TMQD+I +L +++ L+ ++ E+L+ QAK F R+SALR +++ +AI+
Sbjct: 5 ITFLGVIRFTDRVLVAGYSPSEADDSLIIKELMSNPDTFVEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSL-TAKEGG------LSRTMKSSFSDLCIKYDDIRNVDRMAAVQDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIK 196
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|325183073|emb|CCA17529.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 84.3445 bits (207), Expect = 2.039e-15 Identity = 60/213 (28.17%), Postives = 98/213 (46.01%), Query Frame = 0
Query: 9 IFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLA--AAYPAFEA--------------NLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
I +GV R D+ ++ Y S+ S V LA A + A N R S +C + FH + + L++A ++ K+YP RL F L++ +Q+ FV + ++ E G KE KS +Q LA +Y + VDK+ + +VD M +I +L + + +E + T LS QAK F LR + W+ ++
Sbjct: 43 IKFIGVARATDKAIICCYFHSA-KASTNVDLAECAKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALNCREHGLDKEC-------KSMMQTLANQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVK 247
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|1072235835|gb|OEU20563.1| (synaptobrevin-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 83.1889 bits (204), Expect = 4.542e-15 Identity = 47/150 (31.33%), Postives = 81/150 (54.00%), Query Frame = 0
Query: 59 SNFHSLV---DDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
S+ H +V D GL A ++ YPSR+ T+L ++ F A H AE SK+ K L+ KK+ + + VDK Q + +VDA G MQD+IA++L++ + + + +E L+ QA F +R++ L+ ++QW+ ++
Sbjct: 80 SDQHQIVYGADVDGLCVATITGTQYPSRVAITMLTDLYTTFSAKHGDAAKTAAEN-------SLSKKAKKVLEDSCKKFADPSSVDKAQQVLGQVDAVKGQMQDNIASMLKNTEKADDMAAKSEQLNEQASVFKKRSTDLKKQMQWKNLK 222
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|669145366|ref|XP_008608245.1| (hypothetical protein SDRG_04350 [Saprolegnia diclina VS20] >gi|530740411|gb|EQC38653.1| hypothetical protein SDRG_04350 [Saprolegnia diclina VS20]) HSP 1 Score: 82.4185 bits (202), Expect = 1.031e-14 Identity = 59/201 (29.35%), Postives = 96/201 (47.76%), Query Frame = 0
Query: 12 LGVVRVIDRKLLSSYS-------SSSFHPSLLVSLAAAYPAFEA----NLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQW 201
L V R D+ +++SY+ S + +L + A P ++ N R + +C + FH +D+ ++Y ++A +YP RL F LL +QE H ++ +EGG K+ L +A Y + VDKL + +VDA TMQ++I +L + + +E + + LS QAK F R T SR W
Sbjct: 11 LAVARGSDKAIIASYAHTKKDKEESPKYLDMLTKVLRA-PTWKQQVAPNSRHTLDCEPNKFHFTMDNDEIVYVAITAADYPVRLAFKLLAAVQEEMTGKHA-AKLPTVKEGG------LDKECAKGLSVIATTYDDRTKVDKLAEVMAQVDAVKSTMQENIQVVLSNTEKMEMVEQKSNDLSEQAKVF-RNTGKSLSRAMW 202
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|635364142|emb|CCI47366.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 84.3445 bits (207), Expect = 1.273e-14 Identity = 58/213 (27.23%), Postives = 96/213 (45.07%), Query Frame = 0
Query: 9 IFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEA----------------NLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
I +G+ R D+ ++ Y S+ S+ V LA E N R S +C + FH + + L++A ++ K+YP RL F L++ +Q+ FV + + E G KE KS +Q LA +Y + VDK+ + +VD M +I +L + + +E + T LS QAK F LR + W+ ++
Sbjct: 536 IKFIGIARATDKAIICCYFHSN-KSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKEC-------KSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVK 740
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|635364143|emb|CCI47367.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 83.9593 bits (206), Expect = 1.837e-14 Identity = 58/213 (27.23%), Postives = 96/213 (45.07%), Query Frame = 0
Query: 9 IFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEA----------------NLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
I +G+ R D+ ++ Y S+ S+ V LA E N R S +C + FH + + L++A ++ K+YP RL F L++ +Q+ FV + + E G KE KS +Q LA +Y + VDK+ + +VD M +I +L + + +E + T LS QAK F LR + W+ ++
Sbjct: 467 IKFIGIARATDKAIICCYFHSN-KSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKEC-------KSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVK 671
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|635364144|emb|CCI47368.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 83.9593 bits (206), Expect = 1.938e-14 Identity = 58/213 (27.23%), Postives = 96/213 (45.07%), Query Frame = 0
Query: 9 IFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEA----------------NLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
I +G+ R D+ ++ Y S+ S+ V LA E N R S +C + FH + + L++A ++ K+YP RL F L++ +Q+ FV + + E G KE KS +Q LA +Y + VDK+ + +VD M +I +L + + +E + T LS QAK F LR + W+ ++
Sbjct: 463 IKFIGIARATDKAIICCYFHSN-KSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKEC-------KSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVK 667
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|635364145|emb|CCI47369.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 83.5741 bits (205), Expect = 2.714e-14 Identity = 58/213 (27.23%), Postives = 96/213 (45.07%), Query Frame = 0
Query: 9 IFVLGVVRVIDRKLLSSYSSSSFHPSLLVSLAAAYPAFEA----------------NLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIR 205
I +G+ R D+ ++ Y S+ S+ V LA E N R S +C + FH + + L++A ++ K+YP RL F L++ +Q+ FV + + E G KE KS +Q LA +Y + VDK+ + +VD M +I +L + + +E + T LS QAK F LR + W+ ++
Sbjct: 433 IKFIGIARATDKAIICCYFHSN-KSSMNVDLAECTKWKEMYAKVLRAPTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKALSCREHGLDKEC-------KSMVQALATQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVK 637
BLAST of EWM23191.1 vs. NCBI_GenBank
Match: gi|546323088|ref|XP_005717971.1| (VAMP7b [Chondrus crispus] >gi|507114558|emb|CDF38102.1| VAMP7b [Chondrus crispus]) HSP 1 Score: 80.4925 bits (197), Expect = 3.018e-14 Identity = 44/141 (31.21%), Postives = 79/141 (56.03%), Query Frame = 0
Query: 67 DGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDDTLESLTNATESLSHQAKAFHRRTSALRSRVQWEAIRCG 207
D L+Y ++A NYP R F LL E + F EQ K E G K +G +K K +L+ + +Y + A DK+ S+ +VD G MQ +I L++ + LE+L ++++++ ++A F+R T + R++W++++
Sbjct: 68 DPALVYLVITATNYPQRTAFKLLSEARAEF------EQEFKTELAGGKNDG-VAKVAKPFLKRMMDRYEDVAREDKISSVALQVDQVKGLMQTNIQAALKNQENLETLLDSSDTMRNEASTFNRSTKDAKERMRWKSLKMN 201 The following BLAST results are available for this feature:
BLAST of EWM23191.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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