rna7488, rna7488 (mRNA) Nannochloropsis gaditana

Overview
Namerna7488
Unique Namerna7488
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length556
Alignment locationCM002472.1:81352..81716 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101434g1.4004.mrna
Orig protein idgnl|cribi|Naga_101434g1.4004
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:81352..81716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101434g1gene7249Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7488rna7488-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23203.1cds7470Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7488 ID=rna7488|Name=rna7488|organism=Nannochloropsis gaditana|type=mRNA|length=556bp
CTAGCGTACAGGGTACTGAGAGCGTCTTCAGAGACCCAGGACGTCGTTCA
TGGTGGACAGGGATGGTTTCTAGCCTCCAAAGGAAAATTTATGATGAGAT
AGTGCCTCCCTCCCGACGAGGTCGGACTCAACCTCGTCCGACCTCGCATC
CTTCCCCCCCGGCACGACGGCTCATCCGCAAAGCCACGCATGCCAACGGC
ATAAATGGTAAAGGATCAGAGACGACATTAAGTTGCCTGCGCTGTCGGCG
GAGCAAGACAAGATGCGACGGGAAAATCCCTTGCGAGCGCTGCTTTCGCC
TTGCCCTCTCCTGCCATCCCCAGCAGCTCGACAAATGCCGCAATCATAGA
CAAAATGGAGAGTACAGCGGCGTCTCGGACGCGAACACGCGTTATGAGGA
GCTCGCCGAACCAGGTCTGTCATTTCGCCCTCCCTCCCTCCCATCCTCCC
TCCCTTCCTCTCTCCCTCCATTATTGGCTTCACCATGCAACCTGCTTTGT
CCCTAGGCACATAAGGGGAAGAAAAGTCAACGCAAGTTCTCCTCTTTTCC
CCACTC
back to top

protein sequence of rna7488

>rna7488-protein ID=rna7488-protein|Name=rna7488|organism=Nannochloropsis gaditana|type=polypeptide|length=101bp
MRHSCKKEGRREGGREGGREVWWRLLSRLVSSEKDEEGLGYGERVSGGER
EGRRRKGEREAGRDVGWGGRRGDGEKQRWDRYREAELSACLKASVIVIGF
L
back to top

mRNA from alignment at CM002472.1:81352..81716+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7488 ID=rna7488|Name=rna7488|organism=Nannochloropsis gaditana|type=mRNA|length=365bp|location=Sequence derived from alignment at CM002472.1:81352..81716+ (Nannochloropsis gaditana)
atgaggcaTAGctgcaagaaggagggaaggagggagggagggagggaagg
agggagggaggtctggTGGAGGTCGGAGTGATTGTGGATGTATTTGTGGA
TGTATTTTCTTGTGTTGCGCTTTAGCTTAGATTGCTCAGTCGTTTGGTGA
GCTCggaaaaggatgaggagggattgGGATATGGAGAGAGAGTCagcggg
ggagagagagagggaaggagaagaaagggggagagggaggcagggaggga
tgtagggtggggaggaaggcgtggcgACGGAGAGAAGCAAAGGTGGGATA
GATATCGCGAAGCTGAGCTGAGTGCATGTCTTAAGGCTTCTGTGATAGTG
ATAGGGTTTCTCTGA
back to top

Coding sequence (CDS) from alignment at CM002472.1:81352..81716+

>rna7488 ID=rna7488|Name=rna7488|organism=Nannochloropsis gaditana|type=CDS|length=612bp|location=Sequence derived from alignment at CM002472.1:81352..81716+ (Nannochloropsis gaditana)
atgaggcaTAGctgcaagaaggagggaaggagggagggagggagggaagg
agggagggaggtctggTGGAGATTGCTCAGTCGTTTGGTGAGCTCggaaa
aggatgaggagggattgGGATATGGAGAGAGAGTCagcgggggagagaga
gagggaaggagaagaaagggggagagggaggcagggagggatgtagggtg
gggaggaaggcgtggcgACGGAGAGAAGCAAAGGTGGGATAGATATCGCG
AAGCTGAGCTGAGTGCATGTCTTAAGGCTTCTGTGATAGTGATAGGGTTT
CTCTGAatgaggcaTAGctgcaagaaggagggaaggagggagggagggag
ggaaggagggagggaggtctggTGGAGATTGCTCAGTCGTTTGGTGAGCT
CggaaaaggatgaggagggattgGGATATGGAGAGAGAGTCagcggggga
gagagagagggaaggagaagaaagggggagagggaggcagggagggatgt
agggtggggaggaaggcgtggcgACGGAGAGAAGCAAAGGTGGGATAGAT
ATCGCGAAGCTGAGCTGAGTGCATGTCTTAAGGCTTCTGTGATAGTGATA
GGGTTTCTCTGA
back to top
Synonyms
Publications