EWM23203.1, cds7470 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23203.1
Unique Name	cds7470
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002472.1:81352..81422 +
Alignment location	CM002472.1:81482..81716 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23203.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101434g1.4004.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:81352..81422 +
CM002472.1	supercontig	CM002472.1:81482..81716 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM23203.1 vs. NCBI_GenBank
Match: gi|585104103|gb|EWM23203.1| (hypothetical protein Naga_101434g1 [Nannochloropsis gaditana])

HSP 1 Score: 186.808 bits (473), Expect = 1.019e-59
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query:    1 MRHSCKKEGRREGGREGGREVWWRLLSRLVSSEKDEEGLGYGERVSGGEREGRRRKGEREAGRDVGWGGRRGDGEKQRWDRYREAELSACLKASVIVIGFL 101
            MRHSCKKEGRREGGREGGREVWWRLLSRLVSSEKDEEGLGYGERVSGGEREGRRRKGEREAGRDVGWGGRRGDGEKQRWDRYREAELSACLKASVIVIGFL
Sbjct:    1 MRHSCKKEGRREGGREGGREVWWRLLSRLVSSEKDEEGLGYGERVSGGEREGRRRKGEREAGRDVGWGGRRGDGEKQRWDRYREAELSACLKASVIVIGFL 101

The following BLAST results are available for this feature:

BLAST of EWM23203.1 vs. NCBI_GenBank

BLAST of EWM23203.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585104103\|gb\|EWM23203.1\|	1.019e-59	100.00	hypothetical protein Naga_101434g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7488	rna7488	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications