rna7485, rna7485 (mRNA) Nannochloropsis gaditana

Overview
Namerna7485
Unique Namerna7485
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length267
Alignment locationCM002472.1:73858..74760 -

Link to JBrowse

Properties
Property NameValue
Productc6 transcription
Orig transcript idgnl|cribi|Naga_101075g3.10524.mrna
Orig protein idgnl|cribi|Naga_101075g3.10524
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:73858..74760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101075g3gene7246Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7485rna7485-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23204.1cds7467Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7485 ID=rna7485|Name=rna7485|organism=Nannochloropsis gaditana|type=mRNA|length=267bp
ATGGCGAGGGGAAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAAGGAG
GAAGAGAGACAGAAACATAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGAGGAGTACAGAGGAAGGGCGGTGGAGTCCGACGGAGCACG
GCTTGTGACAGGCACCTCAACCCTGCTCTGATTTTGCCCATATATTTGAG
CACATCAAAGATGCTACGATTAGCACATCCTCTGTCAGTAGCAACGAGGT
TTTCAATGTATCATTAG
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protein sequence of rna7485

>rna7485-protein ID=rna7485-protein|Name=rna7485|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MDFPGALRTRASTGGITKETRRSVGPPPEEMKRKRAPRLLCTCVRCRTGK
IKCDGNYPCARCWRLSLPCRVQRLDSWASTPLMQLVVDRGDPLALKSLYM
RAFCQLEEEGKILRKKALDML
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mRNA from alignment at CM002472.1:73858..74760-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7485 ID=rna7485|Name=rna7485|organism=Nannochloropsis gaditana|type=mRNA|length=903bp|location=Sequence derived from alignment at CM002472.1:73858..74760- (Nannochloropsis gaditana)
AGGCATGTGCACTTCGAAGCGGCGAAAGCTTAGGGGAATCACGGGTAACA
TCAGAAGAAGGAACTGAAAGACATGGATTTTCCTGGGGCGTTGCGGACTC
GAGCCTCGACGGGAGGAATCACCAAGGAGACGAGACGGTCGGTCGGGCCC
CCCCCGGAGGAAATGAAGAGGAAACGGGCACCGCGGCTTCTATGCACCTG
CGTGCGGTGTCGGACGGGGAAAATAAAATGTGAGCGGCACAGACGGAAGG
AAGTGGAGGAGCGTGCGACCGGGGGGTACTCGTTGGGGGGGAGTGGCACC
ATGCTTGAGGTTGCAGTCCTCGACCTCGTTCCCATCTCAACCTCCCTCTC
TCCGCTCATGCCTTGTTTGTCTTTTCTTGTCGTTCTGGCGCTGGGGGTCG
TGTGGAAGCAGGGGCTGGAAGGTTGGAAGTGCGTTCTCCTGACCAGAAAT
GCAGCCCCTAGCGATGTCTGCAGATATTTTGCCCACTGCGGGCAGGGCGT
ACCTTCCTCACGCCCACCTTAACTCACCCCTCCTATCTCCCCTCCTTACT
TAAGGTGATGGCAACTATCCTTGTGCACGCTGTTGGCGCCTCTCCCTCCC
TTGCCGTGTCCAACGGCTAGACAGTTGGGCGTCCACGCCGTTGATGCAAT
TGGTTGTGGACCGAGGGGATCCGCTGGGTAAGGAGGAAGGGGAAGGGAAG
GGTGATGAGGAAGGAGGGATGGGGAAGGGTTTCCCCTGATAGATTTGTCC
GCGTGAAGGGCCTCACCCCGTGCTCCCTCCCTTCCTCCCCTCCCTCCCCC
GCGACTTGCGCCTCAGCCTTGAAGTCTTTGTACATGCGGGCTTTCTGCCA
GCTGGAGGAGGAAGGAAAAATATTGCGGAAGAAAGCCTTGGATATGCTGT
AAG
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Coding sequence (CDS) from alignment at CM002472.1:73858..74760-

>rna7485 ID=rna7485|Name=rna7485|organism=Nannochloropsis gaditana|type=CDS|length=1098bp|location=Sequence derived from alignment at CM002472.1:73858..74760- (Nannochloropsis gaditana)
CCTTGAAGTCTTTGTACATGCGGGCTTTCTGCCAGCTGGAGGAGGAAGGA
AAAATATTGCGGAAGAAAGCCTTGGATATGCTGTAAGTGATGGCAACTAT
CCTTGTGCACGCTGTTGGCGCCTCTCCCTCCCTTGCCGTGTCCAACGGCT
AGACAGTTGGGCGTCCACGCCGTTGATGCAATTGGTTGTGGACCGAGGGG
ATCCGCTGGATGGATTTTCCTGGGGCGTTGCGGACTCGAGCCTCGACGGG
AGGAATCACCAAGGAGACGAGACGGTCGGTCGGGCCCCCCCCGGAGGAAA
TGAAGAGGAAACGGGCACCGCGGCTTCTATGCACCTGCGTGCGGTGTCGG
ACGGGGAAAATAAAATCCTTGAAGTCTTTGTACATGCGGGCTTTCTGCCA
GCTGGAGGAGGAAGGAAAAATATTGCGGAAGAAAGCCTTGGATATGCTGT
AAGTGATGGCAACTATCCTTGTGCACGCTGTTGGCGCCTCTCCCTCCCTT
GCCGTGTCCAACGGCTAGACAGTTGGGCGTCCACGCCGTTGATGCAATTG
GTTGTGGACCGAGGGGATCCGCTGGATGGATTTTCCTGGGGCGTTGCGGA
CTCGAGCCTCGACGGGAGGAATCACCAAGGAGACGAGACGGTCGGTCGGG
CCCCCCCCGGAGGAAATGAAGAGGAAACGGGCACCGCGGCTTCTATGCAC
CTGCGTGCGGTGTCGGACGGGGAAAATAAAATCCTTGAAGTCTTTGTACA
TGCGGGCTTTCTGCCAGCTGGAGGAGGAAGGAAAAATATTGCGGAAGAAA
GCCTTGGATATGCTGTAAGTGATGGCAACTATCCTTGTGCACGCTGTTGG
CGCCTCTCCCTCCCTTGCCGTGTCCAACGGCTAGACAGTTGGGCGTCCAC
GCCGTTGATGCAATTGGTTGTGGACCGAGGGGATCCGCTGGATGGATTTT
CCTGGGGCGTTGCGGACTCGAGCCTCGACGGGAGGAATCACCAAGGAGAC
GAGACGGTCGGTCGGGCCCCCCCCGGAGGAAATGAAGAGGAAACGGGCAC
CGCGGCTTCTATGCACCTGCGTGCGGTGTCGGACGGGGAAAATAAAAT
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Synonyms
Publications