EWM23204.1, cds7467 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23204.1 vs. NCBI_GenBank
Match: gi|585104110|gb|EWM23204.1| (c6 transcription [Nannochloropsis gaditana]) HSP 1 Score: 244.588 bits (623), Expect = 5.557e-82 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
Query: 1 MDFPGALRTRASTGGITKETRRSVGPPPEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTPLMQLVVDRGDPLALKSLYMRAFCQLEEEGKILRKKALDML 121
MDFPGALRTRASTGGITKETRRSVGPPPEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTPLMQLVVDRGDPLALKSLYMRAFCQLEEEGKILRKKALDML
Sbjct: 1 MDFPGALRTRASTGGITKETRRSVGPPPEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTPLMQLVVDRGDPLALKSLYMRAFCQLEEEGKILRKKALDML 121
BLAST of EWM23204.1 vs. NCBI_GenBank
Match: gi|585100606|gb|EWM20744.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 58.5362 bits (140), Expect = 1.450e-7 Identity = 36/108 (33.33%), Postives = 57/108 (52.78%), Query Frame = 0
Query: 32 KRKRAPRLLC---TCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWA---------------STPLMQLVVDRGDPLALKSLYMRAFCQLEEEGKILRKKALDML 121
K++RA R+ +C C K CD N+PC RC+R + PCR + + S+P + LV++R D A+ LY++AF L +EG + RK+A+ +L
Sbjct: 104 KKRRASRIRSRERSCRVCYLEKASCDRNFPCGRCFRYNKPCRPATVTQGSRRPVRGTSSSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLL 211
BLAST of EWM23204.1 vs. NCBI_GenBank
Match: gi|443900008|dbj|GAC77335.1| (hypothetical protein PANT_26c00001 [Moesziomyces antarcticus T-34]) HSP 1 Score: 56.6102 bits (135), Expect = 5.968e-7 Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0
Query: 28 PEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTP 81
PE KRKR+ R C+RCR K+KCDG +PCARC +L L C+ + ++ A TP
Sbjct: 61 PEAKKRKRSQR---ACIRCRGQKLKCDGVFPCARCLKLKLVCK-EPSETNAGTP 110
BLAST of EWM23204.1 vs. NCBI_GenBank
Match: gi|1098869049|emb|SAM85245.1| (uncharacterized protein UBRO_07794 [Ustilago bromivora]) HSP 1 Score: 56.6102 bits (135), Expect = 6.147e-7 Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0
Query: 28 PEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTP 81
PE KRKR+ R C+RCR K+KCDG +PCARC +L L C+ + ++ A TP
Sbjct: 62 PEAKKRKRSQR---ACIRCRGQKLKCDGVFPCARCLKLKLVCK-EPSEANAGTP 111
BLAST of EWM23204.1 vs. NCBI_GenBank
Match: gi|388856050|emb|CCF50230.1| (uncharacterized protein UHOR_07794 [Ustilago hordei]) HSP 1 Score: 56.6102 bits (135), Expect = 6.508e-7 Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0
Query: 28 PEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTP 81
PE KRKR+ R C+RCR K+KCDG +PCARC +L L C+ + ++ A TP
Sbjct: 62 PEAKKRKRSQR---ACIRCRGQKLKCDGVFPCARCLKLKLVCK-EPSEANAGTP 111
BLAST of EWM23204.1 vs. NCBI_GenBank
Match: gi|573027206|gb|ETS60454.1| (hypothetical protein PaG_05294 [Moesziomyces aphidis DSM 70725]) HSP 1 Score: 56.6102 bits (135), Expect = 7.246e-7 Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0
Query: 28 PEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTP 81
PE KRKR+ R C+RCR K+KCDG +PCARC +L L C+ + ++ A TP
Sbjct: 61 PEAKKRKRSQR---ACIRCRGQKLKCDGVFPCARCLKLKLVCK-EPSETNAGTP 110 The following BLAST results are available for this feature:
BLAST of EWM23204.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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