EWM23204.1, cds7467 (CDS) Nannochloropsis gaditana

Overview
NameEWM23204.1
Unique Namecds7467
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:74532..74688 -
Alignment locationCM002472.1:74084..74206 -
Alignment locationCM002472.1:73859..73944 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23204.1
Productc6 transcription
Orig transcript idgnl|cribi|Naga_101075g3.10524.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:74532..74688 -
CM002472.1supercontigCM002472.1:74084..74206 -
CM002472.1supercontigCM002472.1:73859..73944 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003700DNA-binding transcription factor activity
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
BLAST of EWM23204.1 vs. NCBI_GenBank
Match: gi|585104110|gb|EWM23204.1| (c6 transcription [Nannochloropsis gaditana])

HSP 1 Score: 244.588 bits (623), Expect = 5.557e-82
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
Query:    1 MDFPGALRTRASTGGITKETRRSVGPPPEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTPLMQLVVDRGDPLALKSLYMRAFCQLEEEGKILRKKALDML 121
            MDFPGALRTRASTGGITKETRRSVGPPPEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTPLMQLVVDRGDPLALKSLYMRAFCQLEEEGKILRKKALDML
Sbjct:    1 MDFPGALRTRASTGGITKETRRSVGPPPEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTPLMQLVVDRGDPLALKSLYMRAFCQLEEEGKILRKKALDML 121          
BLAST of EWM23204.1 vs. NCBI_GenBank
Match: gi|585100606|gb|EWM20744.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 58.5362 bits (140), Expect = 1.450e-7
Identity = 36/108 (33.33%), Postives = 57/108 (52.78%), Query Frame = 0
Query:   32 KRKRAPRLLC---TCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWA---------------STPLMQLVVDRGDPLALKSLYMRAFCQLEEEGKILRKKALDML 121
            K++RA R+     +C  C   K  CD N+PC RC+R + PCR   +   +               S+P + LV++R D  A+  LY++AF  L +EG + RK+A+ +L
Sbjct:  104 KKRRASRIRSRERSCRVCYLEKASCDRNFPCGRCFRYNKPCRPATVTQGSRRPVRGTSSSSLLFQSSPYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLL 211          
BLAST of EWM23204.1 vs. NCBI_GenBank
Match: gi|443900008|dbj|GAC77335.1| (hypothetical protein PANT_26c00001 [Moesziomyces antarcticus T-34])

HSP 1 Score: 56.6102 bits (135), Expect = 5.968e-7
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0
Query:   28 PEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTP 81
            PE  KRKR+ R    C+RCR  K+KCDG +PCARC +L L C+ +  ++ A TP
Sbjct:   61 PEAKKRKRSQR---ACIRCRGQKLKCDGVFPCARCLKLKLVCK-EPSETNAGTP 110          
BLAST of EWM23204.1 vs. NCBI_GenBank
Match: gi|1098869049|emb|SAM85245.1| (uncharacterized protein UBRO_07794 [Ustilago bromivora])

HSP 1 Score: 56.6102 bits (135), Expect = 6.147e-7
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0
Query:   28 PEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTP 81
            PE  KRKR+ R    C+RCR  K+KCDG +PCARC +L L C+ +  ++ A TP
Sbjct:   62 PEAKKRKRSQR---ACIRCRGQKLKCDGVFPCARCLKLKLVCK-EPSEANAGTP 111          
BLAST of EWM23204.1 vs. NCBI_GenBank
Match: gi|388856050|emb|CCF50230.1| (uncharacterized protein UHOR_07794 [Ustilago hordei])

HSP 1 Score: 56.6102 bits (135), Expect = 6.508e-7
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0
Query:   28 PEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTP 81
            PE  KRKR+ R    C+RCR  K+KCDG +PCARC +L L C+ +  ++ A TP
Sbjct:   62 PEAKKRKRSQR---ACIRCRGQKLKCDGVFPCARCLKLKLVCK-EPSEANAGTP 111          
BLAST of EWM23204.1 vs. NCBI_GenBank
Match: gi|573027206|gb|ETS60454.1| (hypothetical protein PaG_05294 [Moesziomyces aphidis DSM 70725])

HSP 1 Score: 56.6102 bits (135), Expect = 7.246e-7
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0
Query:   28 PEEMKRKRAPRLLCTCVRCRTGKIKCDGNYPCARCWRLSLPCRVQRLDSWASTP 81
            PE  KRKR+ R    C+RCR  K+KCDG +PCARC +L L C+ +  ++ A TP
Sbjct:   61 PEAKKRKRSQR---ACIRCRGQKLKCDGVFPCARCLKLKLVCK-EPSETNAGTP 110          
The following BLAST results are available for this feature:
BLAST of EWM23204.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585104110|gb|EWM23204.1|5.557e-82100.00c6 transcription [Nannochloropsis gaditana][more]
gi|585100606|gb|EWM20744.1|1.450e-733.33Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
gi|443900008|dbj|GAC77335.1|5.968e-750.00hypothetical protein PANT_26c00001 [Moesziomyces a... [more]
gi|1098869049|emb|SAM85245.1|6.147e-750.00uncharacterized protein UBRO_07794 [Ustilago bromi... [more]
gi|388856050|emb|CCF50230.1|6.508e-750.00uncharacterized protein UHOR_07794 [Ustilago horde... [more]
gi|573027206|gb|ETS60454.1|7.246e-750.00hypothetical protein PaG_05294 [Moesziomyces aphid... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7485rna7485Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications