rna7483, rna7483 (mRNA) Nannochloropsis gaditana

Overview
Namerna7483
Unique Namerna7483
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length495
Alignment locationCM002472.1:64369..65203 -

Link to JBrowse

Properties
Property NameValue
Productlight harvesting complex protein
Orig transcript idgnl|cribi|Naga_101227g1.5032.mrna
Orig protein idgnl|cribi|Naga_101227g1.5032
GeneNANVCP
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:64369..65203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NANVCPgene7243Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7483rna7483-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23208.1cds7465Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7483 ID=rna7483|Name=rna7483|organism=Nannochloropsis gaditana|type=mRNA|length=495bp
ATGTGTGGGCGATCGGGGATGGGAAAGGCTTGCTCTAAGCTGTTGGCAGG
TGTACTGAAGCATGACCCGCCCTCCCTCCCTCCCTCCCCTTCCTCCCCCT
CCTCCTCCCTCCCTGTGGAAGCCCGGTGTGGGTTCTGGCAGGAAAAGGGG
GAGGGCGCAATGATGAAGACAAGGGAGAGAGGAGGGGAGGGAGGGAGGGA
CGGAGGGAGGTGGAGGGGAGGGCGCTGCATTGAGAGCCTAGATTTCCCTT
CGTCATTGGCAGGAAAAAGAAAAACGGGAAAAGGAGCCCATGCACGGATT
TTGAATTTCCGTTTAAACATTCAATCTTTTCTCGCGTTTCCGTTACATGT
CTGCGAGGCCACCCCCTCATTTCTTCCTCCGACGCTCCTTCTTCCCTCCC
TCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCTGATCGCCTGGTCACCAAC
GTGTCGCGTTTTCGAGGGCGGGGAGGGCGGGGGAGACGGGACTGA
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protein sequence of rna7483

>rna7483-protein ID=rna7483-protein|Name=rna7483|organism=Nannochloropsis gaditana|type=polypeptide|length=134bp
MKFAAFACLASLIGASAFVAPAPKQTRSRGMARMAVDDLIGADVETGGIF
DPLNFSKDAEKLDKYRAVELKHGRVAMLGVLGIWIQAAGLHLPDPVFSNP
RPLAAFLQVSFSHHFYPSSLPPFLPPSLPPSLPP
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mRNA from alignment at CM002472.1:64369..65203-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7483 ID=rna7483|Name=rna7483|organism=Nannochloropsis gaditana|type=mRNA|length=835bp|location=Sequence derived from alignment at CM002472.1:64369..65203- (Nannochloropsis gaditana)
ATGAAATTCGCCGCTTTCGCTTGCTTAGCTTCCCTGATCGGTGCCTCTGC
CTTCGTCGCCCCTGCCCCGAAACAAACTCGCAGCCGCGGCATGGCCCGTA
TGGCCGTAGATGACCTTATCGGTAGGAACGGATGCGACAAGGAGGAAAGG
AAGGAGGAGAAGAACGAAAGCGAGACACATGGGGCGTTGCTTTCGGGGAG
GGGGAAGGGAAAAAAGGTGCCCATGGACCGCCGAAATGCAAAAAGGATGT
GCGTAGAGGCATCTACCGAGTGTATGAGTCCTCTCTGTAACGGGGTTGGA
AACAGAAGGAATCGCCAAGCGCGTGACACTATCTTCCTTTCAGGATAGAG
CAATGCAATCTGCCCTGTCTGGCAAGAGCTCACGGCATGTGTGCCCCTTC
TTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGGC
GCGGATGTGGAGACGGGAGGTATCTTCGACCCCTTGAACTTCTCCAAGGA
CGCCGAGAAGCTGGACAAGTACCGTGCGGTCGAGCTCAAGCACGGACGGG
TGGCCATGTTGGGCGTGCTGGGTATTTGGATCCAGGCCGCTGGCTTGCAC
CTGCCGGACCCCGTTTTCTCGAACCCGCGTCCCCTGGCTGCTTTCCTCCA
GGTGAGGGCGGGAGGGAGGGAGGGCGGGAGGGCGGGAGGGAGGAAGGGCG
GACTGGAACAGGGAGGGCAAGGGATCTGTGCCTGGCTGGTGGTCATTGTC
GCAGGTCTCCTTCAGCCACCATTTTTACCCTTCCTCCCTCCCTCCCTTCC
TCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCTTAG
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Coding sequence (CDS) from alignment at CM002472.1:64369..65203-

>rna7483 ID=rna7483|Name=rna7483|organism=Nannochloropsis gaditana|type=CDS|length=1215bp|location=Sequence derived from alignment at CM002472.1:64369..65203- (Nannochloropsis gaditana)
GTCTCCTTCAGCCACCATTTTTACCCTTCCTCCCTCCCTCCCTTCCTCCC
TCCCTCCCTTCCTCCCTCCCTCCCTCCTTAGGCGCGGATGTGGAGACGGG
AGGTATCTTCGACCCCTTGAACTTCTCCAAGGACGCCGAGAAGCTGGACA
AGTACCGTGCGGTCGAGCTCAAGCACGGACGGGTGGCCATGTTGGGCGTG
CTGGGTATTTGGATCCAGGCCGCTGGCTTGCACCTGCCGGACCCCGTTTT
CTCGAACCCGCGTCCCCTGGCTGCTTTCCTCCAGATGAAATTCGCCGCTT
TCGCTTGCTTAGCTTCCCTGATCGGTGCCTCTGCCTTCGTCGCCCCTGCC
CCGAAACAAACTCGCAGCCGCGGCATGGCCCGTATGGCCGTAGATGACCT
TATCGGTCTCCTTCAGCCACCATTTTTACCCTTCCTCCCTCCCTCCCTTC
CTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCTTAGGCGCGGATGTGGAG
ACGGGAGGTATCTTCGACCCCTTGAACTTCTCCAAGGACGCCGAGAAGCT
GGACAAGTACCGTGCGGTCGAGCTCAAGCACGGACGGGTGGCCATGTTGG
GCGTGCTGGGTATTTGGATCCAGGCCGCTGGCTTGCACCTGCCGGACCCC
GTTTTCTCGAACCCGCGTCCCCTGGCTGCTTTCCTCCAGATGAAATTCGC
CGCTTTCGCTTGCTTAGCTTCCCTGATCGGTGCCTCTGCCTTCGTCGCCC
CTGCCCCGAAACAAACTCGCAGCCGCGGCATGGCCCGTATGGCCGTAGAT
GACCTTATCGGTCTCCTTCAGCCACCATTTTTACCCTTCCTCCCTCCCTC
CCTTCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCTTAGGCGCGGATG
TGGAGACGGGAGGTATCTTCGACCCCTTGAACTTCTCCAAGGACGCCGAG
AAGCTGGACAAGTACCGTGCGGTCGAGCTCAAGCACGGACGGGTGGCCAT
GTTGGGCGTGCTGGGTATTTGGATCCAGGCCGCTGGCTTGCACCTGCCGG
ACCCCGTTTTCTCGAACCCGCGTCCCCTGGCTGCTTTCCTCCAGATGAAA
TTCGCCGCTTTCGCTTGCTTAGCTTCCCTGATCGGTGCCTCTGCCTTCGT
CGCCCCTGCCCCGAAACAAACTCGCAGCCGCGGCATGGCCCGTATGGCCG
TAGATGACCTTATCG
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Synonyms
Publications