EWM23208.1, cds7465 (CDS) Nannochloropsis gaditana

Overview
NameEWM23208.1
Unique Namecds7465
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:65083..65203 -
Alignment locationCM002472.1:64553..64755 -
Alignment locationCM002472.1:64369..64449 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23208.1
Productlight harvesting complex protein
Orig transcript idgnl|cribi|Naga_101227g1.5032.mrna
GeneNANVCP
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:65083..65203 -
CM002472.1supercontigCM002472.1:64553..64755 -
CM002472.1supercontigCM002472.1:64369..64449 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0009507chloroplast
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0006464cellular protein modification process
GO:0006091generation of precursor metabolites and energy
GO:0009765photosynthesis, light harvesting
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom
Homology
[Close]
BLAST of EWM23208.1 vs. NCBI_GenBank
Match: gi|585104119|gb|EWM23208.1| (light harvesting complex protein [Nannochloropsis gaditana])

HSP 1 Score: 268.47 bits (685), Expect = 5.829e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 
Query:    1 MKFAAFACLASLIGASAFVAPAPKQTRSRGMARMAVDDLIGADVETGGIFDPLNFSKDAEKLDKYRAVELKHGRVAMLGVLGIWIQAAGLHLPDPVFSNPRPLAAFLQVSFSHHFYPSSLPPFLPPSLPPSLPP 134
            MKFAAFACLASLIGASAFVAPAPKQTRSRGMARMAVDDLIGADVETGGIFDPLNFSKDAEKLDKYRAVELKHGRVAMLGVLGIWIQAAGLHLPDPVFSNPRPLAAFLQVSFSHHFYPSSLPPFLPPSLPPSLPP
Sbjct:    1 MKFAAFACLASLIGASAFVAPAPKQTRSRGMARMAVDDLIGADVETGGIFDPLNFSKDAEKLDKYRAVELKHGRVAMLGVLGIWIQAAGLHLPDPVFSNPRPLAAFLQVSFSHHFYPSSLPPFLPPSLPPSLPP 134
[Close]
BLAST of EWM23208.1 vs. NCBI_GenBank
Match: gi|585107630|gb|EWM25765.1| (light harvesting complex protein [Nannochloropsis gaditana])

HSP 1 Score: 115.546 bits (288), Expect = 1.218e-29
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 0 
Query:    4 AAFACLASLIGASAFVAPAPKQTRSRGMARMAVDDLIGADVETGGIFDPLNFSKDAEKLDKYRAVELKHGRVAMLGVLGIWI 85
            +A   + SL  ASAFV  APK +R+RGM RMAV+D++G+DVETGG++DPLNFSKD   L +YRAVELKHGR+AML VLG+W+
Sbjct:    3 SAMVLVGSLAVASAFVPAAPKMSRTRGMTRMAVNDILGSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWV 84
[Close]
BLAST of EWM23208.1 vs. NCBI_GenBank
Match: gi|585113162|gb|EWM30498.1| (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 114.775 bits (286), Expect = 2.496e-29
Identity = 61/105 (58.10%), Postives = 76/105 (72.38%), Query Frame = 0 
Query:    5 AFACLASLIGASAFVAPAPKQTRSRGMARMAVDDLIGADVETGGIFDPLNFSKDAEKLDKYRAVELKHGRVAMLGVLGIWIQAAGLHLPDPVFSNPRPLAAFLQV 109
            AFA LA L  ++AF+  AP+ TR R + RMAV+++IG+DVET G+FDPL  +KD   L + R +ELKHGRVAML  LG  +Q+   HLPD VFSNPRPLAA  QV
Sbjct:    4 AFAFLALLGVSTAFMPTAPRMTRGRSV-RMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSF-YHLPDEVFSNPRPLAALAQV 106
[Close]
BLAST of EWM23208.1 vs. NCBI_GenBank
Match: gi|873224040|emb|CEM27246.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 112.849 bits (281), Expect = 1.527e-28
Identity = 50/77 (64.94%), Postives = 65/77 (84.42%), Query Frame = 0 
Query:   33 RMAVDDLIGADVETGGIFDPLNFSKDAEKLDKYRAVELKHGRVAMLGVLGIWIQAAGLHLPDPVFSNPRPLAAFLQV 109
            +M+V+++IGADVETGG+FDPL FS+D   L + RAVELKHGR+AML  LG ++Q+AG+HLPDPVFS PRPL+A  +V
Sbjct:   43 KMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDPVFSEPRPLSALTKV 119
[Close]
BLAST of EWM23208.1 vs. NCBI_GenBank
Match: gi|873230095|emb|CEM11606.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 108.612 bits (270), Expect = 7.758e-27
Identity = 62/116 (53.45%), Postives = 74/116 (63.79%), Query Frame = 0 
Query:    1 MKFAAFACLASLIGASAFVAPAPKQT--RSRGMAR-----MAVDDLIGADVETGGIFDPLNFSKDAEKLDKYRAVELKHGRVAMLGVLGIWIQAAGLHLPDPVFSNPRPLAAFLQV 109
            MK    A    ++GA AFV P   Q   RSRG AR      AVD L GADVETGG++DPL  S++ + L  YRA ELKHGRV M+ VLG+ +Q     LPDPVF+NPRPL A +QV
Sbjct:    1 MKSVICAIALLVVGAHAFVPPTGFQGALRSRGAARPATTMGAVDQLAGADVETGGVWDPLGLSQNEDALSLYRAAELKHGRVCMMAVLGVIVQTY-FQLPDPVFNNPRPLEAIVQV 115
[Close]
BLAST of EWM23208.1 vs. NCBI_GenBank
Match: gi|553181527|ref|XP_005853581.1| (light harvesting complex protein [Nannochloropsis gaditana CCMP526] >gi|422295478|gb|EKU22777.1| light harvesting complex protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.916 bits (263), Expect = 5.109e-26
Identity = 61/110 (55.45%), Postives = 70/110 (63.64%), Query Frame = 0 
Query:    5 AFACLASLIGASAFVAPAPKQTRSRGMARM-----AVDDLIGADVETGGIFDPLNFSKDAEKLDKYRAVELKHGRVAMLGVLGIWIQAAGLHLPDPVFSNPRPLAAFLQV 109
            A   L  L  A+AF+ PA   T     AR      +V DLIGAD ETGGI+DPL  S++   L KYR  ELKHGRVAM  +LGI++Q    HLPDPVFSNPRPLAA  QV
Sbjct:    4 AVVLLGLLSSAAAFI-PATFNTGKSSYARKNLVVASVSDLIGADTETGGIWDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGL-YHLPDPVFSNPRPLAALQQV 111
[Close]
BLAST of EWM23208.1 vs. NCBI_GenBank
Match: gi|585110528|gb|EWM28183.1| (light harvesting complex protein [Nannochloropsis gaditana])

HSP 1 Score: 105.531 bits (262), Expect = 8.835e-26
Identity = 61/110 (55.45%), Postives = 70/110 (63.64%), Query Frame = 0 
Query:    5 AFACLASLIGASAFVAPAPKQTRSRGMARM-----AVDDLIGADVETGGIFDPLNFSKDAEKLDKYRAVELKHGRVAMLGVLGIWIQAAGLHLPDPVFSNPRPLAAFLQV 109
            A   L  L  A+AF+ PA   T     AR      +V DLIGAD ETGGI+DPL  S++   L KYR  ELKHGRVAM  +LGI++Q    HLPDPVFSNPRPLAA  QV
Sbjct:    4 AVVLLGLLSSAAAFI-PATFNTGKSSYARKNLVVASVSDLIGADTETGGIWDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGL-YHLPDPVFSNPRPLAALQQV 111
[Close]
BLAST of EWM23208.1 vs. NCBI_GenBank
Match: gi|585112441|gb|EWM29860.1| (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 103.219 bits (256), Expect = 2.717e-25
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0 
Query:   34 MAVDDLIGADVETGGIFDPLNFSKDAEKLDKYRAVELKHGRVAMLGVLGIWIQAAGLHLPDPVFSNPRPLAAFLQV 109
            M+  D+IG DVETGG+FDPL FSKD + L KYR VELKHGRVAML  LG  +Q+   HLPD VFSNPRPL A  Q+
Sbjct:    1 MSASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSY-THLPDDVFSNPRPLGALGQL 75
[Close]
BLAST of EWM23208.1 vs. NCBI_GenBank
Match: gi|585101827|gb|EWM21572.1| (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 90.5077 bits (223), Expect = 5.439e-20
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 0 
Query:    1 MKFAAFACLASLIGASAFVAPAPKQTRSRGMARMAVDDLIGADVETGGIFDPLNFSKDA--EKLDKYRAVELKHGRVAMLGVLGIWIQAAGLHLPDPV 96
            MK AA   ++SL+GASAFVAPAPK +R+RG+ARM+ +   G      G +DPL FS D   EK ++YRA+E+KHGRVAML +L   +   G+ LP  V
Sbjct:    1 MKTAALLTVSSLMGASAFVAPAPKFSRTRGVARMSFEGEAGVTAPL-GYWDPLGFSADGDVEKFNRYRAIEIKHGRVAMLAMLHTLVTGLGVKLPGLV 97
[Close]
BLAST of EWM23208.1 vs. NCBI_GenBank
Match: gi|2734864|gb|AAB94637.1| (violaxanthin/chlorophyll a binding protein precursor [Nannochloropsis sp.])

HSP 1 Score: 87.0409 bits (214), Expect = 1.205e-18
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 0 
Query:    1 MKFAAFACLASLIGASAFVAPAPKQTRSRGMARMAVDDLIGADVETGGIFDPLNFSKDA--EKLDKYRAVELKHGRVAMLGVLGIWIQAAGLHLPDPV 96
            MK AA   +++L+GA AF+APAPK +R+RG+ARM+ ++  G      G +DPL  S D   +K ++YRA+E+KHGRVAML +L   I  AG+ LP  V
Sbjct:    1 MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPL-GYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLV 97
The following BLAST results are available for this feature:
BLAST of EWM23208.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104119|gb|EWM23208.1|5.829e-91100.00light harvesting complex protein [Nannochloropsis ... [more]
gi|585107630|gb|EWM25765.1|1.218e-2964.63light harvesting complex protein [Nannochloropsis ... [more]
gi|585113162|gb|EWM30498.1|2.496e-2958.10light-harvesting protein [Nannochloropsis gaditana... [more]
gi|873224040|emb|CEM27246.1|1.527e-2864.94unnamed protein product [Vitrella brassicaformis C... [more]
gi|873230095|emb|CEM11606.1|7.758e-2753.45unnamed protein product [Vitrella brassicaformis C... [more]
gi|553181527|ref|XP_005853581.1|5.109e-2655.45light harvesting complex protein [Nannochloropsis ... [more]
gi|585110528|gb|EWM28183.1|8.835e-2655.45light harvesting complex protein [Nannochloropsis ... [more]
gi|585112441|gb|EWM29860.1|2.717e-2565.79light-harvesting protein [Nannochloropsis gaditana... [more]
gi|585101827|gb|EWM21572.1|5.439e-2051.02light-harvesting protein [Nannochloropsis gaditana... [more]
gi|2734864|gb|AAB94637.1|1.205e-1847.96violaxanthin/chlorophyll a binding protein precurs... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7483rna7483Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications