rna7477, rna7477 (mRNA) Nannochloropsis gaditana

Overview
Namerna7477
Unique Namerna7477
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length387
Alignment locationCM002472.1:45570..45888 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101006g2.4583.mrna
Orig protein idgnl|cribi|Naga_101006g2.4583
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:45570..45888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101006g2gene7237Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7477rna7477-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23215.1cds7459Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7477 ID=rna7477|Name=rna7477|organism=Nannochloropsis gaditana|type=mRNA|length=387bp
ATGGGAGGCTTTCTCGGTCTGTGCTCGTCTCTGCTGGTCCCGAAAGCCAC
GCACACGAATGCTCTTGACCAAAGCTTCGGGAGGTGTTGGGGAAATATTA
TCCGAAGGTGCAATGGTACACCTGCAGCTCCGACGGCGAGCTCGTCCCTG
TCAAGTCCACTTTGTTGGAGAAATTGGAGGGACAGTAGAGGGAGCGAGCG
ATGGGCGGGTTTGTCGGTGGAGCACGTGGAGGAAGGCGAGGAGCGCGTGA
TCGAACACCGAGAGGGGGAGCCCCGGGGGGGTCATGGAATCAATGAAAAA
AGCCTTCCTTTTGCGGGGAGAGGACGCGACGTGCGGTGCAGAAGGTGGCC
TGCGGTCACTGGAGAGGTACGGGTAGAGAGACTATGA
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protein sequence of rna7477

>rna7477-protein ID=rna7477-protein|Name=rna7477|organism=Nannochloropsis gaditana|type=polypeptide|length=88bp
MCRKGRVIQGEKSASKCHRVVDRAWYARSRCARRGSRENEKNDFFSSRLH
AACMYWNRSKASVSWRRTKVLVLSNASCARGPQHVRQF
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mRNA from alignment at CM002472.1:45570..45888+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7477 ID=rna7477|Name=rna7477|organism=Nannochloropsis gaditana|type=mRNA|length=319bp|location=Sequence derived from alignment at CM002472.1:45570..45888+ (Nannochloropsis gaditana)
ATGTGTAGAAAAGGTCGCGTGATacagggagagaaaagcgCTAGCAAATG
TCATAGAGTGGTGGATCGTGCGTGGTATGCCCGGAGTCGGTGCGCGAGGA
GAGGGTCTAGAGAGAATGAGAAAAACGGTAGGGATGAGGCCGCCGTACGG
CGAGAAGGGGCGGGGATGGCGCGATGAAGACTTCTTTTCATCCAGGTTGC
ATGCTGCGTGTATGTATTGGAATAGGTCAAAAGCCTCTGTCTCGTGGCGA
AGGACCAAGGTGCTCGTTTTGAGCAATGCGTCATGTGCGAGAGGACCACA
GCACGTACGTCAATTTTGA
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Coding sequence (CDS) from alignment at CM002472.1:45570..45888+

>rna7477 ID=rna7477|Name=rna7477|organism=Nannochloropsis gaditana|type=CDS|length=534bp|location=Sequence derived from alignment at CM002472.1:45570..45888+ (Nannochloropsis gaditana)
ATGTGTAGAAAAGGTCGCGTGATacagggagagaaaagcgCTAGCAAATG
TCATAGAGTGGTGGATCGTGCGTGGTATGCCCGGAGTCGGTGCGCGAGGA
GAGGGTCTAGAGAGAATGAGAAAAACGACTTCTTTTCATCCAGGTTGCAT
GCTGCGTGTATGTATTGGAATAGGTCAAAAGCCTCTGTCTCGTGGCGAAG
GACCAAGGTGCTCGTTTTGAGCAATGCGTCATGTGCGAGAGGACCACAGC
ACGTACGTCAATTTTGAATGTGTAGAAAAGGTCGCGTGATacagggagag
aaaagcgCTAGCAAATGTCATAGAGTGGTGGATCGTGCGTGGTATGCCCG
GAGTCGGTGCGCGAGGAGAGGGTCTAGAGAGAATGAGAAAAACGACTTCT
TTTCATCCAGGTTGCATGCTGCGTGTATGTATTGGAATAGGTCAAAAGCC
TCTGTCTCGTGGCGAAGGACCAAGGTGCTCGTTTTGAGCAATGCGTCATG
TGCGAGAGGACCACAGCACGTACGTCAATTTTGA
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Synonyms
Publications