rna7474, rna7474 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7474
Unique Name	rna7474
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1734
Alignment location	CM002472.1:40317..42317 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100553g1.8985.mrna
Orig protein id	gnl\|cribi\|Naga_100553g1.8985
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:40317..42317 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100553g1	gene7234	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7474	rna7474-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23217.1	cds7456	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:40317..42317+
coding sequence from alignment at CM002472.1:40317..42317+

mRNA sequence

>rna7474 ID=rna7474|Name=rna7474|organism=Nannochloropsis gaditana|type=mRNA|length=1734bp
TTATATCTTGCATTCTTCCCAACCAAGTAAATTGCAATGTAAGTTTTCTC
GTTCATCATCAATCATAACTCCACGCGATCCTATGCATCGGGTAATACGC
TTTTCCTGGCATTAAAAGTAGGCACACACACTACTCCCACTTCTTACTGC
CCAGACCGTAGATAGCTATCACCGCCATCATGATTCCTGCCAACCAAACC
TTCAGCGGAAGGAAAAAGGCAGCTTTGTCCTTCACAGGAGGGAAGGATTG
CTTACTTGCCTTGTCAGAGATATATGCCAATCCCAATTTTAAGACAGAGG
TGACGGTGACAGTCCTGGTCACGTTCGGTCCGCCAGAGGCATTTCTTGAG
GACAAAGAGGAGGAAGTGGTTGCGGAAGTGGATAACACTCAGCCCTTTAC
AGTAGATGATGAAAAAGATTGCAGAAAACCCAAGAAAAAGAAAAGCTTCC
TTGCTCATCCATTGCGGGTCATAAAATTACAAGCACGAGCTCTAGGCTTG
CCTCACGTCGTGTTCCCTGTTGTAGGCCCGTCTTATTTGGAAAGCTATGT
GGTAAGTAGCAAAAAAGACATATGAGCAGACAAAAACTGAATAGTACTGA
AGCAAGAAAGCAGCACACGGGTTAACGGGAGGAATCCTGTGTTGGCGTAA
CATTGGAAAAGCTGCCCTTATTCATCTCTCGCGAAATGCGAACACATTTT
TTCCCCCGGCCTCTATTCAATTCTCTGCAGGAAGCCCTTAAGAAACTGAT
GATAGACCATCACGTGAGTCATCTGGTCACGGGCGACATATTAGACGTCT
GTCAACAATTTATGCAAAGAGTCGCGGACAAGGCAGGGATGGTTCTCCTA
CGACCCCTGTGGGAGAGACCACGTCGGGAGCTCCTTTCCCTATTGGAGCG
TTCCTCTCCCCCTCCCTCTCTTCCTCCCTCCCTTCATCCTGTCTCTTGCC
CTTGTCCTTCAGCTCTGTCTTCTGCCCCTTCATCTTTTACTCTCCTGATA
TCTTGTTGCAGCGTGGAGAAGATGGGCATCACTCGGGCGAGAGATTTCGT
CGCTTTATGCGGAGACAAAGCATTGCAAAAATTACTTAATCTGGCACGAC
GCAATGAGGAACGAGACAAGCAACGAGGACTGGAGGATAGCCAAGACCTA
GGGAGGGAGAAGGAGTCGTTGGAGGGAAAGCAGGAAGGAGTACCGGGAGC
GGAGGGGGAAGGAAGAGAAGGAAAAGAAGGAATCGTATCAGGGATTGAGG
GCCATCGAAAGGTGGAAGTAATAGATAAAGAAGTGGAGGATACAGCTATC
GATGCTTGTGGCGAAGGGGGAGAATACCATTCTATGGTATTGGACATGCC
TCTTTTCACCCACGGCTACCTGAGCTTCAATGATCAGGTACAGATACCTC
CTGTACTTGAGTCTGATGATGGAAAATACCTGTACTGTGACCTGGGCGCC
TTGGGCTATGTGGAAAGACCAACCAAATCGTGATAGGGTAACGTAGGCTT
ATCTTAAGATTACAATAATTACGGGGGACAAGGTCACAGAAAATTAACGA
TTCAAAGCTTAAAGGGTAGATTGATTTTTCCCCTTGAATGCGACAGTCCC
AGGTCTGCCTTCAAAGATACCAAGGCCTTCCAGAACATAGGAATTTCAAG
GAAATGTTCTCAAAATTGTACAAACTCAACTGCATACTTATCCATCCGCT
AGGAAAAAGAATAAATATGGTATACTGGTGTACA

protein sequence of rna7474

>rna7474-protein ID=rna7474-protein|Name=rna7474|organism=Nannochloropsis gaditana|type=polypeptide|length=177bp
MRVRYSSALLLALSLASTSFAVPPTEDAATSATANGAASALLGDLQNPIG
DPGDVLAGIIHENWDSIFKKDSGGVKGLLHRKRQLLSDLGLEAADADSLE
VETGAGTEGDLEGGDEEQVLAYSPKLPGRGQSLIPSLRKRNPLLPSSEGS
QPVRLRTAWRVQRPLGAPKAPVLGRPT

mRNA from alignment at CM002472.1:40317..42317+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7474 ID=rna7474|Name=rna7474|organism=Nannochloropsis gaditana|type=mRNA|length=2001bp|location=Sequence derived from alignment at CM002472.1:40317..42317+ (Nannochloropsis gaditana)
ATGCGCGTTCGGTATAGCTCcgcgcttctccttgccttgAGCTTGGCAAG
CACCAGGTATGTCCTCCTTAAAGCCTCCAATTGATTTAGCTATCTATGTT
CCTAGGCAATCGATGGACTCGAAAGATGTTTCGATGGTCTCGAACGCATC
CTTTTAGGAAGGAGAATACCACGCTTTCCCTTCGGCTTTGTCCGGTTTCT
ACTAAGTTTAGAATTAGGCGCGCGCCTACCCTCCCAATTTTTCCAGACGT
CCGTCCTTATAGACCCACTGCCAACTTCTTTCTTCCTattcgtcttcttc
ttcttctccccttttctaCCAGTTTCGCGGTTCCTCCCACGGAGGACGCA
GCAACCTCAGCCACCGCCAACGGcgcggcctccgccctcctgggAGACCT
ACAGAACCCTATCGGAGATCCCGGAGATGTCCTGGCCGGTATCATCCACG
AAAATTGGGACAGCATCTTTAAAAAAGGTACATGGAAGATGGAGAAATCT
GCCCAGATCCTGGAATCCAAGCCTTGCCTTGCTGCTGCCTGCTTCTTGCG
TATTCCCAGTACCACGCTCCCGACATGACATGACACATAGTAACAACGTG
CACCCCCCTCAAACACTCTTGCCCACTCTAccattctccctcctgcccct
ccttcactgTGAGAGACGTGTACGTCTCGCCATGCCACTTCTTTCATCCA
TGTCTTTTCTTTCTATTccctcatcccttccccttgcccctcccgcccct
ccactcccctccaCGCGCAGACTCTGGCGGAGTTAAGGGCCTCTTACACC
GAAAACGACAGCTGCTGTCCGACTTAGGTTTGGAGGCAGCTGACGCAGAC
AGGTGAAGAAAGGGctgggaagcgaggaagggggagaagaggggtcGGTG
GATGGTGGGGGGCGGAATACGCTCCCGGTCTTTCCTCAATTTATCTAAGA
ATTATTTCTCAACCTTCCTATCCGTCTTTCCTATTGTTCTTTTTACCTTT
CCAGTCTCGAGGTCGAgaccggggcggggacggagggcgacttggaggga
ggggacgaggagcaggtggaGCACGACGGCGACCATCGCCATCTCCAGCT
CACTAAGATCTTTGGCATGAACCCGGCGCGGACAGGTCCTAGCCTACAGT
CcaaagctacccggacgTGGGCAAAGGTGCGggttttccccttcttgtcc
ccgcttctctttcctcctttgtgcCCGGTGTCGTCTTCTTGTCGGGGATT
TTTGGGTTATCGCTCATATCGGATAGGCGTGCCTGGTGGAGTGGACAGCT
CATTTCGAACTATATGTTTTTATATATTGTACAtcactttttctttctgT
CGTATTGGGTAGCTCATTTCGATAcaccccccttctctctttcttcgcct
tccttctcttcctcccttcctccctcccttcctccctccagcctgATCCC
AAGCCTGCGAAAAAGaaatcctcttcttccctcttcggAAGGAAGTCAGC
CAGTGTAAgcactctttccctccctccctccctccctccctccctccctt
ccttcctccttctctaccTACCTCCGTCCTTCTCTGCCTACCTATCTTCC
GGCCTCCCGtcatccaccctccctctttgccttcttaactctcttcccca
ccccatttccccctccctctcccttcgtttctcccacccgtccttcctcc
ctttacGATCCTCACCTTAACTCTTCACACgacccctccgcccccttcat
TATTCCCCCCCAGACGCTTACGAACGGCGTGGAGAGTGCAGAGGCCTCTG
GGCGCACCCAAGGCACCTGTGCTTGgcaggtaggagggagggagggaagg
aggaggggaggaagagaggggggaagggaaggagaaaggcggtAGGGATC
TTTTTCTTCagtccttcctcgcccatgcCTCTcctatctccctcctgcct
tccctccctcctcccctccctccctcccttccttcccctagACCTACGTG
A

Coding sequence (CDS) from alignment at CM002472.1:40317..42317+

>rna7474 ID=rna7474|Name=rna7474|organism=Nannochloropsis gaditana|type=CDS|length=4272bp|location=Sequence derived from alignment at CM002472.1:40317..42317+ (Nannochloropsis gaditana)
ATGCGCGTTCGGTATAGCTCcgcgcttctccttgccttgAGCTTGGCAAG
CACCAGTTTCGCGGTTCCTCCCACGGAGGACGCAGCAACCTCAGCCACCG
CCAACGGcgcggcctccgccctcctgggAGACCTACAGAACCCTATCGGA
GATCCCGGAGATGTCCTGGCCGGTATCATCCACGAAAATTGGGACAGCAT
CTTTAAAAAAGACTCTGGCGGAGTTAAGGGCCTCTTACACCGAAAACGAC
AGCTGCTGTCCGACTTAGGTTTGGAGGCAGCTGACGCAGACAGTCTCGAG
GTCGAgaccggggcggggacggagggcgacttggagggaggggacgagga
gcagGTCCTAGCCTACAGTCcaaagctacccggacgTGGGCAAAGcctgA
TCCCAAGCCTGCGAAAAAGaaatcctcttcttccctcttcggAAGGAAGT
CAGCCAGTACGCTTACGAACGGCGTGGAGAGTGCAGAGGCCTCTGGGCGC
ACCCAAGGCACCTGTGCTTGgcagACCTACGTGAATGCGCGTTCGGTATA
GCTCcgcgcttctccttgccttgAGCTTGGCAAGCACCAGTTTCGCGGTT
CCTCCCACGGAGGACGCAGCAACCTCAGCCACCGCCAACGGcgcggcctc
cgccctcctgggAGACCTACAGAACCCTATCGGAGATCCCGGAGATGTCC
TGGCCGGTATCATCCACGAAAATTGGGACAGCATCTTTAAAAAAGACTCT
GGCGGAGTTAAGGGCCTCTTACACCGAAAACGACAGCTGCTGTCCGACTT
AGGTTTGGAGGCAGCTGACGCAGACAGTCTCGAGGTCGAgaccggggcgg
ggacggagggcgacttggagggaggggacgaggagcagGTCCTAGCCTAC
AGTCcaaagctacccggacgTGGGCAAAGcctgATCCCAAGCCTGCGAAA
AAGaaatcctcttcttccctcttcggAAGGAAGTCAGCCAGTACGCTTAC
GAACGGCGTGGAGAGTGCAGAGGCCTCTGGGCGCACCCAAGGCACCTGTG
CTTGgcagACCTACGTGAATGCGCGTTCGGTATAGCTCcgcgcttctcct
tgccttgAGCTTGGCAAGCACCAGTTTCGCGGTTCCTCCCACGGAGGACG
CAGCAACCTCAGCCACCGCCAACGGcgcggcctccgccctcctgggAGAC
CTACAGAACCCTATCGGAGATCCCGGAGATGTCCTGGCCGGTATCATCCA
CGAAAATTGGGACAGCATCTTTAAAAAAGACTCTGGCGGAGTTAAGGGCC
TCTTACACCGAAAACGACAGCTGCTGTCCGACTTAGGTTTGGAGGCAGCT
GACGCAGACAGTCTCGAGGTCGAgaccggggcggggacggagggcgactt
ggagggaggggacgaggagcagGTCCTAGCCTACAGTCcaaagctacccg
gacgTGGGCAAAGcctgATCCCAAGCCTGCGAAAAAGaaatcctcttctt
ccctcttcggAAGGAAGTCAGCCAGTACGCTTACGAACGGCGTGGAGAGT
GCAGAGGCCTCTGGGCGCACCCAAGGCACCTGTGCTTGgcagACCTACGT
GAATGCGCGTTCGGTATAGCTCcgcgcttctccttgccttgAGCTTGGCA
AGCACCAGTTTCGCGGTTCCTCCCACGGAGGACGCAGCAACCTCAGCCAC
CGCCAACGGcgcggcctccgccctcctgggAGACCTACAGAACCCTATCG
GAGATCCCGGAGATGTCCTGGCCGGTATCATCCACGAAAATTGGGACAGC
ATCTTTAAAAAAGACTCTGGCGGAGTTAAGGGCCTCTTACACCGAAAACG
ACAGCTGCTGTCCGACTTAGGTTTGGAGGCAGCTGACGCAGACAGTCTCG
AGGTCGAgaccggggcggggacggagggcgacttggagggaggggacgag
gagcagGTCCTAGCCTACAGTCcaaagctacccggacgTGGGCAAAGcct
gATCCCAAGCCTGCGAAAAAGaaatcctcttcttccctcttcggAAGGAA
GTCAGCCAGTACGCTTACGAACGGCGTGGAGAGTGCAGAGGCCTCTGGGC
GCACCCAAGGCACCTGTGCTTGgcagACCTACGTGAATGCGCGTTCGGTA
TAGCTCcgcgcttctccttgccttgAGCTTGGCAAGCACCAGTTTCGCGG
TTCCTCCCACGGAGGACGCAGCAACCTCAGCCACCGCCAACGGcgcggcc
tccgccctcctgggAGACCTACAGAACCCTATCGGAGATCCCGGAGATGT
CCTGGCCGGTATCATCCACGAAAATTGGGACAGCATCTTTAAAAAAGACT
CTGGCGGAGTTAAGGGCCTCTTACACCGAAAACGACAGCTGCTGTCCGAC
TTAGGTTTGGAGGCAGCTGACGCAGACAGTCTCGAGGTCGAgaccggggc
ggggacggagggcgacttggagggaggggacgaggagcagGTCCTAGCCT
ACAGTCcaaagctacccggacgTGGGCAAAGcctgATCCCAAGCCTGCGA
AAAAGaaatcctcttcttccctcttcggAAGGAAGTCAGCCAGTACGCTT
ACGAACGGCGTGGAGAGTGCAGAGGCCTCTGGGCGCACCCAAGGCACCTG
TGCTTGgcagACCTACGTGAATGCGCGTTCGGTATAGCTCcgcgcttctc
cttgccttgAGCTTGGCAAGCACCAGTTTCGCGGTTCCTCCCACGGAGGA
CGCAGCAACCTCAGCCACCGCCAACGGcgcggcctccgccctcctgggAG
ACCTACAGAACCCTATCGGAGATCCCGGAGATGTCCTGGCCGGTATCATC
CACGAAAATTGGGACAGCATCTTTAAAAAAGACTCTGGCGGAGTTAAGGG
CCTCTTACACCGAAAACGACAGCTGCTGTCCGACTTAGGTTTGGAGGCAG
CTGACGCAGACAGTCTCGAGGTCGAgaccggggcggggacggagggcgac
ttggagggaggggacgaggagcagGTCCTAGCCTACAGTCcaaagctacc
cggacgTGGGCAAAGcctgATCCCAAGCCTGCGAAAAAGaaatcctcttc
ttccctcttcggAAGGAAGTCAGCCAGTACGCTTACGAACGGCGTGGAGA
GTGCAGAGGCCTCTGGGCGCACCCAAGGCACCTGTGCTTGgcagACCTAC
GTGAATGCGCGTTCGGTATAGCTCcgcgcttctccttgccttgAGCTTGG
CAAGCACCAGTTTCGCGGTTCCTCCCACGGAGGACGCAGCAACCTCAGCC
ACCGCCAACGGcgcggcctccgccctcctgggAGACCTACAGAACCCTAT
CGGAGATCCCGGAGATGTCCTGGCCGGTATCATCCACGAAAATTGGGACA
GCATCTTTAAAAAAGACTCTGGCGGAGTTAAGGGCCTCTTACACCGAAAA
CGACAGCTGCTGTCCGACTTAGGTTTGGAGGCAGCTGACGCAGACAGTCT
CGAGGTCGAgaccggggcggggacggagggcgacttggagggaggggacg
aggagcagGTCCTAGCCTACAGTCcaaagctacccggacgTGGGCAAAGc
ctgATCCCAAGCCTGCGAAAAAGaaatcctcttcttccctcttcggAAGG
AAGTCAGCCAGTACGCTTACGAACGGCGTGGAGAGTGCAGAGGCCTCTGG
GCGCACCCAAGGCACCTGTGCTTGgcagACCTACGTGAATGCGCGTTCGG
TATAGCTCcgcgcttctccttgccttgAGCTTGGCAAGCACCAGTTTCGC
GGTTCCTCCCACGGAGGACGCAGCAACCTCAGCCACCGCCAACGGcgcgg
cctccgccctcctgggAGACCTACAGAACCCTATCGGAGATCCCGGAGAT
GTCCTGGCCGGTATCATCCACGAAAATTGGGACAGCATCTTTAAAAAAGA
CTCTGGCGGAGTTAAGGGCCTCTTACACCGAAAACGACAGCTGCTGTCCG
ACTTAGGTTTGGAGGCAGCTGACGCAGACAGTCTCGAGGTCGAgaccggg
gcggggacggagggcgacttggagggaggggacgaggagcagGTCCTAGC
CTACAGTCcaaagctacccggacgTGGGCAAAGcctgATCCCAAGCCTGC
GAAAAAGaaatcctcttcttccctcttcggAAGGAAGTCAGCCAGTACGC
TTACGAACGGCGTGGAGAGTGCAGAGGCCTCTGGGCGCACCCAAGGCACC
TGTGCTTGgcagACCTACGTGA

Synonyms

Publications