|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100553g2.8986.mrna |
| Orig protein id | gnl|cribi|Naga_100553g2.8986 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002472.1 | supercontig | CM002472.1:37735..39678 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7473 ID=rna7473|Name=rna7473|organism=Nannochloropsis gaditana|type=mRNA|length=2202bp
AGTCGTCCTTCTTACCATTTTATGATCGCATTTTGTAGGTTTTTGAACAG
CGACCCTTTTTGTCAAGGAAGTCAACCACCCACGTGGACGGATATCTTAT
ACTTTACATGAATGCTTTTCGAATCTTACGGGACCACTCCACTTGTTTCA
TAGCCACCTAGTGAAAAACAGGCACACATACGAAGATATCTACTCTGACA
AGTGGAGGTGTAACGCGGAGAGTGAGGAAGGCCTTGTCACATTAGCGCTG
ACGAAGGACATGTCAGCTATGCGGGTCTGTCATTTCCATCTCGCACTCCT
TCTTTTGGGTGGTCTCCAACTTGCACCGGCAGAAATTATCAAAGCATCAG
TCTATGGTGGAAACAGCTCTAATCTAGAGACTTTAGGTGTTGAAGGCCTA
CCCACGAATATGGTGGTCGATAGAAAAGGTTACACATACCTGCTGGGAGA
ATACTCGTCGTATAAACCAAACATGTTCTTCATTGGCCGCCCTCTTGAGT
CCAGAATTGCGGTTGAACCTTTCATAGCTAAGTTATCGCCCGAGGGCGAA
GTATTATGGGTCAATGACTTCCTAGGGAGGGGGTCTAGCGAGGAGGACGG
GACGGACTATGTAGCCTCGGCGAGCGGCCTCGCTCTGGGGCCCGAAGGAG
ATTGCTTTGTGGCAGGACATTTCAATTCAGCAAGCTTATCCTTCCGTACA
TCGTATAGCACCAATGTAACCCTGGTCAATCCGGGGTTTGCATCGGGCAA
TGCCGCCATCTTTGTCACCAAGCTGGATGTCGCGGTTGGGATGGTAGAGT
GGGCGACTCTGGTGAGCTCGCCTGCTGGGACTCGGCTTGATCCCAATGAG
CGATTGATGACGGCCCTCATTGTGGACAATGAAGGCGCTAATCTCTACTT
GGGCGGCGCGTACGACCCAGGGGAAGAAGCGCTTTCCTACGGACGCACCT
ATACAATAAACGACCTGGAAGTGAAATCTTACGGAGCTAGGGACTTGCTG
CTCGCACAGCTTTCGCCCGATACAGGAAAGATGAATTGGGTCCAAACATA
CGGTGGGACAAAAGACGAGGCAATCGCCTCCTTGGCAGTGAACCAGAAAT
CCACACAAGTAATCTTCCTCGCAAATTCCGCTTCCACCAAGATCGATCTA
GGAAGGCGCGTTTCTCCTTTATCCGGGTATGCAGGAAAGAGAGCAGAGGC
AAACACAGTAATATTAGGCACTGTGGAGGCTCACGGGTCGCGTCGGCTTC
CTGGTGGAAGTGTTTTGGGAGCTTCGGCGTTCGGGGGCACGGACGCGTTC
AACGGCGGGAAGGGCATGGCGTTGAAAGTGGACCCGTCGGACGCGGTTTA
CGTCCTGGGAAATTTCCACGGAAAATTCCAGACGGGCGTCGACACAAAAG
GAGGGCCTGTCCTTCTGCAGTCGCTGCAATCCGACCCCAGCCACCCTTCT
CCTTTGGCGGACACGGACGTGTTTTTAGCGAAGTACCGCGTGGAGGGAGA
CCCTGCTTTTCAGCTGCTTTGGGCCCAGGCTTTTGGTGGCTACGGCCAAG
ACATGGCGGGGGGAATGGATTACGGCGGGGAGATGATCTACCTGTCCGTC
TTCTCGGCCGGCCAGAACATCACTATGGGCCTCGTAAATCCGCGCCGGGG
AATGTCAGGGGTCTTCCTTGAAAATACCTTCACAGGTGACTATGCCACTA
CTAATGTGGCCACCGTCGACGGAAACAATGGAGCGATCAGGACCGCCGTC
AACATGCTTGCGCCTGCTTGCGCAGCGCCACCGGGCTCAATCATCGATGG
GCAGAGCGCGCTGGCTTTGGATCAGGTGGGACGTCTGTACATGTGGGGTC
CGCGCTACCAGCCCGATGCTGGGCCCGACGCAATTTTGGCACGGACCGTG
TGCTCCGAGACGCTGCCGCTTTCTATTGGAGGGGACTTGTTGTACCATGC
GACCATCTCAACCCTATCTTGCGAACCTGCAACGAAATGCACACGGGTTA
CGGGTTGCGTATGATAAATAATGACATGAATGCTACTTTCTTTGTTCCAT
CTCGAATCGACGTGCATCATGGTTCGAAAATTACATAGCTACCAATTGTA
TAGTGTCTTCCTTGAAAACGTGCTATTTTGAAGCTACGATGACAAGAGAC
AGGAACGAGAAAAAACCTCGAATGATAGAACAACTTGGATAATCTCCTCT
GC back to topprotein sequence of rna7473 >rna7473-protein ID=rna7473-protein|Name=rna7473|organism=Nannochloropsis gaditana|type=polypeptide|length=265bp
MRTHFFPRPLFNSLQEALKKLMIDHHVSHLVTGDILDVCQQFMQRVADKA
GMVLLRPLWERPRRELLSLLERSSPPPSLPPSLHPVSCPCPSALSSAPSS
FTLLISCCSVEKMGITRARDFVALCGDKALQKLLNLARRNEERDKQRGLE
DSQDLGREKESLEGKQEGVPGAEGEGREGKEGIVSGIEGHRKVEVIDKEV
EDTAIDACGEGGEYHSMVLDMPLFTHGYLSFNDQVQIPPVLESDDGKYLY
CDLGALGYVERPTKS back to topmRNA from alignment at CM002472.1:37735..39678+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7473 ID=rna7473|Name=rna7473|organism=Nannochloropsis gaditana|type=mRNA|length=1944bp|location=Sequence derived from alignment at CM002472.1:37735..39678+ (Nannochloropsis gaditana)
TTATATCTTGCATTCTTCCCAACCAAGTAAATTGCAATGTAAGTTTTCTC
GTTCATCATCAATCATAACTCCACGCGATCCTATGCATCGGGTAATACGC
TTTTCCTGGCATTAAAAGTAGGCACACACACTACTCCCACTTCTTACTGC
CCAGACCGTAGATAGCTATCACCGCCATCATGATTCCTGCCAACCAAACC
TTCagcggaaggaaaaaggcagcTTTGTCCTtcacaggagggaaggattg
cTTACTTGCCTTGTCAGAGATATATGCCAATCCCAATTTTAAGACAGAGG
TGACGGTGACAGTCCTGGTCACGTTCGGTCCGCCAGAGGCATTTCttgag
gacaaagaggaggaagtggttGCGGAAGTGGATAACACTCAGCCCTTTAC
AGTAGATGATGAAAAAGATTGCAGAAAacccaagaaaaagaaaagcttcC
TTGCTCATCCATTGCGGGTCATAAAATTACAAGCACGAGCTCTAGGCTTG
CCTCACGTCGTGTTCCCTGTTGTAGGCCCGTCTTATTTGGAAAGCTATGT
GGTAAGTAGCAAAAAAGACATATGAGCAGACAAAAACTGAATAGTACTGA
AGCAAGAAAGCAGCACACGGGTTAACGGGAGGAATCCTGTGTTGGCGTAA
CATTGGAAAAGCTGCCCTTATTCATCTCTCGCGAAATGCGAAcacatttt
ttcccccgGCCTCTATTCAATTCTCTGCAGGAAGCCCTTAAGAAACTGAT
GATAGACCATCACGTGAGTCATCTGGTCACGGGCGACATATTAGACGTCT
GTCAACAATTTATGCAAAGAGTCGCGGACAAGGCAGGGATGGTTCTCCTA
CGACCCCTGTGGGAGAGACCACGTCGGGAGCTCCTTTCCCTATTGGAgcg
ttcctctccccctccctctcttcctccctcccttcatcctgtCTCTTGCC
CTTGTCCTTCAGCTCTGTCTTCTGCCCCTTCATCTTTTACTCTCCTGATA
TCTTGTTGCAGCGTGGAGAAGATGGGCATCACTCGGGCGAGAGATTTCGT
CGCTTTATGCGGAGACAAAGCATTGCAAAAATTACTTAATCTGGCACGAC
GCAATGAGGAACGAGACAAGCAACGAGGACTGGAGGATAGCCAAGAccta
gggagggagaaggagtcgttggagggaaagcaggaaggagtaccgggagc
ggagggggaaggaagagaaggaaaagaaggaatcGTATCAGGGATTGAGG
GCCATCGAAAGGTGGAAGTAATAGATAAAGAAGTGGAGGATACAGCTATC
GATGCTTgtggcgaagggggagaataCCATTCTATGGTACGTTTTGAAAA
CACAGAAGTAGCAAACAAAGGATCGTGAGAGAAGTAGTGCAATAGGACGC
ACGGGGAAGGACTTGTTGTAGATCTCGGGAAAGTAGCGGTATGGTTGAGC
CTATTGCTGCCAAAGAGGGTTGAATACAACGTATGCCTCCCCATGTGTGA
AATTCATGTCGCAAATCTCACCCACTGCTCGCACCAAACATTACAGGTAT
TGGACATGCCTCTTTTCACCCACGGCTACCTGAGCTTCAATGATCAGGTA
CAGATACCTCCTGTACTTGAGTCTGATGATGGAAAATACCTGTACTGTGA
CCTGGGCGCCTTGGGCTATGTGGAAAGACCAACCAAATCGTGATAGGGTA
ACGTAGGCTTATCTTAAGATTACAATAATTACGGGGGACAAGGTCACAGA
AAATTAACGATTCAAAGCTTAAAGGGTAGATTGATTTTTCCCCTTGAATG
CGACAGTCCCAGGTCTGCCTTCAAAGATACCAAGGCCTTCCAGAACATAG
GAATTTCAAGGAAATGTTCTCAAAATTGTACAAACTCAACTGCATACTTA
TCCATCCGCTAGGAAAAAGAATAAATATGGTATACTGGTGTACA back to topCoding sequence (CDS) from alignment at CM002472.1:37735..39678+ >rna7473 ID=rna7473|Name=rna7473|organism=Nannochloropsis gaditana|type=CDS|length=1596bp|location=Sequence derived from alignment at CM002472.1:37735..39678+ (Nannochloropsis gaditana)
ATGCGAAcacattttttcccccgGCCTCTATTCAATTCTCTGCAGGAAGC
CCTTAAGAAACTGATGATAGACCATCACGTGAGTCATCTGGTCACGGGCG
ACATATTAGACGTCTGTCAACAATTTATGCAAAGAGTCGCGGACAAGGCA
GGGATGGTTCTCCTACGACCCCTGTGGGAGAGACCACGTCGGGAGCTCCT
TTCCCTATTGGAgcgttcctctccccctccctctcttcctccctcccttc
atcctgtCTCTTGCCCTTGTCCTTCAGCTCTGTCTTCTGCCCCTTCATCT
TTTACTCTCCTGATATCTTGTTGCAGCGTGGAGAAGATGGGCATCACTCG
GGCGAGAGATTTCGTCGCTTTATGCGGAGACAAAGCATTGCAAAAATTAC
TTAATCTGGCACGACGCAATGAGGAACGAGACAAGCAACGAGGACTGGAG
GATAGCCAAGAcctagggagggagaaggagtcgttggagggaaagcagga
aggagtaccgggagcggagggggaaggaagagaaggaaaagaaggaatcG
TATCAGGGATTGAGGGCCATCGAAAGGTGGAAGTAATAGATAAAGAAGTG
GAGGATACAGCTATCGATGCTTgtggcgaagggggagaataCCATTCTAT
GGTATTGGACATGCCTCTTTTCACCCACGGCTACCTGAGCTTCAATGATC
AGGTACAGATACCTCCTGTACTTGAGTCTGATGATGGAAAATACCTGTAC
TGTGACCTGGGCGCCTTGGGCTATGTGGAAAGACCAACCAAATCGTGAAT
GCGAAcacattttttcccccgGCCTCTATTCAATTCTCTGCAGGAAGCCC
TTAAGAAACTGATGATAGACCATCACGTGAGTCATCTGGTCACGGGCGAC
ATATTAGACGTCTGTCAACAATTTATGCAAAGAGTCGCGGACAAGGCAGG
GATGGTTCTCCTACGACCCCTGTGGGAGAGACCACGTCGGGAGCTCCTTT
CCCTATTGGAgcgttcctctccccctccctctcttcctccctcccttcat
cctgtCTCTTGCCCTTGTCCTTCAGCTCTGTCTTCTGCCCCTTCATCTTT
TACTCTCCTGATATCTTGTTGCAGCGTGGAGAAGATGGGCATCACTCGGG
CGAGAGATTTCGTCGCTTTATGCGGAGACAAAGCATTGCAAAAATTACTT
AATCTGGCACGACGCAATGAGGAACGAGACAAGCAACGAGGACTGGAGGA
TAGCCAAGAcctagggagggagaaggagtcgttggagggaaagcaggaag
gagtaccgggagcggagggggaaggaagagaaggaaaagaaggaatcGTA
TCAGGGATTGAGGGCCATCGAAAGGTGGAAGTAATAGATAAAGAAGTGGA
GGATACAGCTATCGATGCTTgtggcgaagggggagaataCCATTCTATGG
TATTGGACATGCCTCTTTTCACCCACGGCTACCTGAGCTTCAATGATCAG
GTACAGATACCTCCTGTACTTGAGTCTGATGATGGAAAATACCTGTACTG
TGACCTGGGCGCCTTGGGCTATGTGGAAAGACCAACCAAATCGTGA back to top
|