EWM23218.1, cds7455 (CDS) Nannochloropsis gaditana

Overview
NameEWM23218.1
Unique Namecds7455
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:38420..39070 +
Alignment locationCM002472.1:39281..39427 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23218.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100553g2.8986.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:38420..39070 +
CM002472.1supercontigCM002472.1:39281..39427 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold
IPR002761DUF71_dom
Homology
[Close]
BLAST of EWM23218.1 vs. NCBI_GenBank
Match: gi|585104147|gb|EWM23218.1| (hypothetical protein Naga_100553g2 [Nannochloropsis gaditana])

HSP 1 Score: 541.191 bits (1393), Expect = 0.000e+0
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0 
Query:    1 MRTHFFPRPLFNSLQEALKKLMIDHHVSHLVTGDILDVCQQFMQRVADKAGMVLLRPLWERPRRELLSLLERSSPPPSLPPSLHPVSCPCPSALSSAPSSFTLLISCCSVEKMGITRARDFVALCGDKALQKLLNLARRNEERDKQRGLEDSQDLGREKESLEGKQEGVPGAEGEGREGKEGIVSGIEGHRKVEVIDKEVEDTAIDACGEGGEYHSMVLDMPLFTHGYLSFNDQVQIPPVLESDDGKYLYCDLGALGYVERPTKS 265
            MRTHFFPRPLFNSLQEALKKLMIDHHVSHLVTGDILDVCQQFMQRVADKAGMVLLRPLWERPRRELLSLLERSSPPPSLPPSLHPVSCPCPSALSSAPSSFTLLISCCSVEKMGITRARDFVALCGDKALQKLLNLARRNEERDKQRGLEDSQDLGREKESLEGKQEGVPGAEGEGREGKEGIVSGIEGHRKVEVIDKEVEDTAIDACGEGGEYHSMVLDMPLFTHGYLSFNDQVQIPPVLESDDGKYLYCDLGALGYVERPTKS
Sbjct:    1 MRTHFFPRPLFNSLQEALKKLMIDHHVSHLVTGDILDVCQQFMQRVADKAGMVLLRPLWERPRRELLSLLERSSPPPSLPPSLHPVSCPCPSALSSAPSSFTLLISCCSVEKMGITRARDFVALCGDKALQKLLNLARRNEERDKQRGLEDSQDLGREKESLEGKQEGVPGAEGEGREGKEGIVSGIEGHRKVEVIDKEVEDTAIDACGEGGEYHSMVLDMPLFTHGYLSFNDQVQIPPVLESDDGKYLYCDLGALGYVERPTKS 265
[Close]
BLAST of EWM23218.1 vs. NCBI_GenBank
Match: gi|552935579|gb|ESA18896.1| (hypothetical protein GLOINDRAFT_344360, partial [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 71.2478 bits (173), Expect = 3.851e-11
Identity = 40/125 (32.00%), Postives = 62/125 (49.60%), Query Frame = 0 
Query:   16 EALKKLMIDHHVSHLVTGDILDVCQQFMQRVADKAGMVLLRPLWERPRRELLSLLERSSPPPSLPPSLHPVSCPCPSALSSAPSSFTLLISCCSVEKMGITRARDFVALCGDKALQKLLNLARRN 140
            E+ + L+I  +V +L TGDILDVC QFM RV +   + LLRPLWER R EL++++                            ++F +LI+C ++ K+    AR  V     + L + + L + N
Sbjct:   87 ESYRSLIISRNVPYLATGDILDVCNQFMDRVVENTNVKLLRPLWERDRNELMNII--------------------------FLNNFEILITCVNLNKINENVARKMVGSMLTRELYENIILKQNN 185
[Close]
BLAST of EWM23218.1 vs. NCBI_GenBank
Match: gi|595487848|gb|EXX73451.1| (hypothetical protein RirG_060160 [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 71.2478 bits (173), Expect = 4.147e-11
Identity = 40/125 (32.00%), Postives = 62/125 (49.60%), Query Frame = 0 
Query:   16 EALKKLMIDHHVSHLVTGDILDVCQQFMQRVADKAGMVLLRPLWERPRRELLSLLERSSPPPSLPPSLHPVSCPCPSALSSAPSSFTLLISCCSVEKMGITRARDFVALCGDKALQKLLNLARRN 140
            E+ + L+I  +V +L TGDILDVC QFM RV +   + LLRPLWER R EL++++                            ++F +LI+C ++ K+    AR  V     + L + + L + N
Sbjct:   87 ESYRSLIISRNVPYLATGDILDVCNQFMDRVVENTNVKLLRPLWERDRNELMNII--------------------------FLNNFEILITCVNLNKINENVARKMVGSMLTRELYENIILKQNN 185
The following BLAST results are available for this feature:
BLAST of EWM23218.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585104147|gb|EWM23218.1|0.000e+0100.00hypothetical protein Naga_100553g2 [Nannochloropsi... [more]
gi|552935579|gb|ESA18896.1|3.851e-1132.00hypothetical protein GLOINDRAFT_344360, partial [R... [more]
gi|595487848|gb|EXX73451.1|4.147e-1132.00hypothetical protein RirG_060160 [Rhizophagus irre... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7473rna7473Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications